Scutellaria polyadenia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058256.1 · 3–76 bp · −
psbA · PQ058256.1 · 373–1,431 bp · −
trnK-UUU · PQ058256.1 · 1,672–4,270 bp · −
matK · PQ058256.1 · 1,967–3,511 bp · −
rps16 · PQ058256.1 · 5,184–6,352 bp · −
trnQ-UUG · PQ058256.1 · 7,465–7,536 bp · −
trnS-GCU · PQ058256.1 · 8,673–8,760 bp · −
atpA · PQ058256.1 · 10,575–12,092 bp · −
atpF · PQ058256.1 · 12,175–13,404 bp · −
atpH · PQ058256.1 · 13,767–14,012 bp · −
atpI · PQ058256.1 · 14,999–15,742 bp · −
rps2 · PQ058256.1 · 16,091–16,801 bp · −
rpoC2 · PQ058256.1 · 17,026–21,225 bp · −
rpoC1 · PQ058256.1 · 21,380–24,222 bp · −
rpoB · PQ058256.1 · 24,249–27,461 bp · −
psbM · PQ058256.1 · 30,547–30,660 bp · −
trnD-GUC · PQ058256.1 · 31,187–31,260 bp · −
trnY-GUA · PQ058256.1 · 31,374–31,457 bp · −
trnE-UUC · PQ058256.1 · 31,517–31,589 bp · −
trnS-UGA · PQ058256.1 · 36,230–36,321 bp · −
trnfM-CAU · PQ058256.1 · 37,309–37,382 bp · −
rps14 · PQ058256.1 · 37,537–37,839 bp · −
psaB · PQ058256.1 · 37,967–40,171 bp · −
psaA · PQ058256.1 · 40,198–42,450 bp · −
ycf3 · PQ058256.1 · 43,164–45,084 bp · −
rps4 · PQ058256.1 · 46,256–46,861 bp · −
trnT-UGU · PQ058256.1 · 47,211–47,283 bp · −
ndhJ · PQ058256.1 · 49,574–50,050 bp · −
ndhK · PQ058256.1 · 50,159–50,836 bp · −
ndhC · PQ058256.1 · 50,889–51,251 bp · −
trnV-UAC · PQ058256.1 · 52,234–52,886 bp · −
atpE · PQ058256.1 · 53,356–53,757 bp · −
atpB · PQ058256.1 · 53,754–55,250 bp · −
psbJ · PQ058256.1 · 64,965–65,087 bp · −
psbL · PQ058256.1 · 65,221–65,442 bp · −
psbF · PQ058256.1 · 65,361–65,480 bp · −
psbE · PQ058256.1 · 65,495–65,746 bp · −
trnW-CCA · PQ058256.1 · 67,123–67,196 bp · −
trnP-UGG · PQ058256.1 · 67,367–67,440 bp · −
rpl20 · PQ058256.1 · 69,244–69,630 bp · −
rps12 · PQ058256.1 · 70,414–70,539 bp · −
rps12 · PQ058256.1 · 97,646–98,436 bp · −
clpP · PQ058256.1 · 70,681–72,622 bp · −
psbN · PQ058256.1 · 74,964–75,095 bp · −
rpoA · PQ058256.1 · 78,663–79,457 bp · −
rps11 · PQ058256.1 · 79,529–79,945 bp · −
rpl36 · PQ058256.1 · 80,047–80,160 bp · −
infA · PQ058256.1 · 80,256–80,489 bp · −
rps8 · PQ058256.1 · 80,609–81,019 bp · −
rpl14 · PQ058256.1 · 81,184–81,552 bp · −
rpl16 · PQ058256.1 · 81,680–82,896 bp · −
rps3 · PQ058256.1 · 83,002–83,664 bp · −
rpl22 · PQ058256.1 · 83,666–84,121 bp · −
rps19 · PQ058256.1 · 84,181–84,459 bp · −
rpl2 · PQ058256.1 · 84,514–85,996 bp · −
rpl23 · PQ058256.1 · 86,015–86,296 bp · −
trnI-CAU · PQ058256.1 · 86,456–86,529 bp · −
trnL-CAA · PQ058256.1 · 94,017–94,097 bp · −
ndhB · PQ058256.1 · 94,639–96,850 bp · −
rps7 · PQ058256.1 · 97,125–97,592 bp · −
trnN-GUU · PQ058256.1 · 108,472–108,543 bp · −
ndhF · PQ058256.1 · 109,619–111,859 bp · −
ndhD · PQ058256.1 · 114,389–115,891 bp · −
psaC · PQ058256.1 · 116,017–116,262 bp · −
ndhE · PQ058256.1 · 116,518–116,823 bp · −
ndhG · PQ058256.1 · 117,055–117,585 bp · −
ndhI · PQ058256.1 · 117,943–118,443 bp · −
ndhA · PQ058256.1 · 118,524–120,609 bp · −
ndhH · PQ058256.1 · 120,611–121,822 bp · −
rps15 · PQ058256.1 · 121,889–122,161 bp · −
ycf1 · PQ058256.1 · 122,434–127,965 bp · −
trnR-ACG · PQ058256.1 · 128,922–128,995 bp · −
rrn5 · PQ058256.1 · 129,230–129,350 bp · −
rrn4.5 · PQ058256.1 · 129,598–129,700 bp · −
rrn23 · PQ058256.1 · 129,799–132,610 bp · −
trnA-UGC · PQ058256.1 · 132,780–133,667 bp · −
trnI-GAU · PQ058256.1 · 133,732–134,751 bp · −
ycf68 · PQ058256.1 · 134,303–134,596 bp · −
rrn16 · PQ058256.1 · 135,050–136,540 bp · −
trnV-GAC · PQ058256.1 · 136,767–136,838 bp · −
ycf15 · PQ058256.1 · 143,080–143,277 bp · −
ycf2 · PQ058256.1 · 143,419–150,219 bp · −
psbK · PQ058256.1 · 7,861–8,046 bp · +
psbI · PQ058256.1 · 8,445–8,555 bp · +
trnG-UCC · PQ058256.1 · 9,474–10,226 bp · +
trnR-UCU · PQ058256.1 · 10,401–10,472 bp · +
trnC-GCA · PQ058256.1 · 28,644–28,714 bp · +
petN · PQ058256.1 · 29,445–29,534 bp · +
trnT-GGU · PQ058256.1 · 32,161–32,232 bp · +
psbD · PQ058256.1 · 33,551–34,612 bp · +
psbC · PQ058256.1 · 34,560–35,981 bp · +
psbZ · PQ058256.1 · 36,637–36,825 bp · +
trnG-GCC · PQ058256.1 · 37,098–37,168 bp · +
trnS-GGA · PQ058256.1 · 45,884–45,970 bp · +
trnL-UAA · PQ058256.1 · 47,973–48,541 bp · +
trnF-GAA · PQ058256.1 · 48,849–48,921 bp · +
trnM-CAU · PQ058256.1 · 53,075–53,147 bp · +
rbcL · PQ058256.1 · 55,999–57,459 bp · +
accD · PQ058256.1 · 58,174–59,652 bp · +
psaI · PQ058256.1 · 60,364–60,474 bp · +
ycf4 · PQ058256.1 · 60,907–61,461 bp · +
cemA · PQ058256.1 · 62,202–62,801 bp · +
petA · PQ058256.1 · 63,006–63,968 bp · +
petL · PQ058256.1 · 66,619–66,714 bp · +
petG · PQ058256.1 · 66,891–67,004 bp · +
psaJ · PQ058256.1 · 67,713–67,847 bp · +
rpl33 · PQ058256.1 · 68,329–68,529 bp · +
rps18 · PQ058256.1 · 68,704–69,009 bp · +
rps12 · PQ058256.1 · 138,401–139,191 bp · +
psbB · PQ058256.1 · 73,085–74,611 bp · +
psbT · PQ058256.1 · 74,796–74,903 bp · +
psbH · PQ058256.1 · 75,199–75,420 bp · +
petB · PQ058256.1 · 75,545–76,904 bp · +
petD · PQ058256.1 · 77,091–78,288 bp · +
ycf2 · PQ058256.1 · 86,618–93,418 bp · +
ycf15 · PQ058256.1 · 93,560–93,757 bp · +
trnV-GAC · PQ058256.1 · 99,999–100,070 bp · +
rrn16 · PQ058256.1 · 100,297–101,787 bp · +
trnI-GAU · PQ058256.1 · 102,086–103,105 bp · +
trnA-UGC · PQ058256.1 · 103,170–104,057 bp · +
rrn23 · PQ058256.1 · 104,227–107,038 bp · +
rrn4.5 · PQ058256.1 · 107,137–107,239 bp · +
rrn5 · PQ058256.1 · 107,487–107,607 bp · +
trnR-ACG · PQ058256.1 · 107,842–107,915 bp · +
rpl32 · PQ058256.1 · 112,375–112,551 bp · +
trnL-UAG · PQ058256.1 · 112,998–113,077 bp · +
ccsA · PQ058256.1 · 113,176–114,150 bp · +
trnN-GUU · PQ058256.1 · 128,294–128,365 bp · +
rps7 · PQ058256.1 · 139,245–139,712 bp · +
ndhB · PQ058256.1 · 139,987–142,198 bp · +
trnL-CAA · PQ058256.1 · 142,740–142,820 bp · +
trnI-CAU · PQ058256.1 · 150,308–150,381 bp · +
rpl23 · PQ058256.1 · 150,541–150,822 bp · +
rpl2 · PQ058256.1 · 150,841–152,323 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria polyadenia
ANNOTATED PLASTOME
PQ058256.1
152,418 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38104 76209 114314 152418 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1672 4270 2599 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5184 6352 1169 Locate
trnQ-UUG gene − 7465 7536 72 Locate
psbK gene + 7861 8046 186 Locate
psbI gene + 8445 8555 111 Locate
trnS-GCU gene − 8673 8760 88 Locate
trnG-UCC gene + 9474 10226 753 Locate
trnR-UCU gene + 10401 10472 72 Locate
atpA gene − 10575 12092 1518 Locate
atpF gene − 12175 13404 1230 Locate
atpH gene − 13767 14012 246 Locate
atpI gene − 14999 15742 744 Locate
rps2 gene − 16091 16801 711 Locate
rpoC2 gene − 17026 21225 4200 Locate
rpoC1 gene − 21380 24222 2843 Locate
rpoB gene − 24249 27461 3213 Locate
trnC-GCA gene + 28644 28714 71 Locate
petN gene + 29445 29534 90 Locate
psbM gene − 30547 30660 114 Locate
trnD-GUC gene − 31187 31260 74 Locate
trnY-GUA gene − 31374 31457 84 Locate
trnE-UUC gene − 31517 31589 73 Locate
trnT-GGU gene + 32161 32232 72 Locate
psbD gene + 33551 34612 1062 Locate
psbC gene + 34560 35981 1422 Locate
trnS-UGA gene − 36230 36321 92 Locate
psbZ gene + 36637 36825 189 Locate
trnG-GCC gene + 37098 37168 71 Locate
trnfM-CAU gene − 37309 37382 74 Locate
rps14 gene − 37537 37839 303 Locate
psaB gene − 37967 40171 2205 Locate
psaA gene − 40198 42450 2253 Locate
ycf3 gene − 43164 45084 1921 Locate
trnS-GGA gene + 45884 45970 87 Locate
rps4 gene − 46256 46861 606 Locate
trnT-UGU gene − 47211 47283 73 Locate
trnL-UAA gene + 47973 48541 569 Locate
trnF-GAA gene + 48849 48921 73 Locate
ndhJ gene − 49574 50050 477 Locate
ndhK gene − 50159 50836 678 Locate
ndhC gene − 50889 51251 363 Locate
trnV-UAC gene − 52234 52886 653 Locate
trnM-CAU gene + 53075 53147 73 Locate
atpE gene − 53356 53757 402 Locate
atpB gene − 53754 55250 1497 Locate
rbcL gene + 55999 57459 1461 Locate
accD gene + 58174 59652 1479 Locate
psaI gene + 60364 60474 111 Locate
ycf4 gene + 60907 61461 555 Locate
cemA gene + 62202 62801 600 Locate
petA gene + 63006 63968 963 Locate
psbJ gene − 64965 65087 123 Locate
psbL gene − 65221 65442 222 Locate
psbF gene − 65361 65480 120 Locate
psbE gene − 65495 65746 252 Locate
petL gene + 66619 66714 96 Locate
petG gene + 66891 67004 114 Locate
trnW-CCA gene − 67123 67196 74 Locate
trnP-UGG gene − 67367 67440 74 Locate
psaJ gene + 67713 67847 135 Locate
rpl33 gene + 68329 68529 201 Locate
rps18 gene + 68704 69009 306 Locate
rpl20 gene − 69244 69630 387 Locate
rps12 gene − 70414 70539 126 Locate
clpP gene − 70681 72622 1942 Locate
psbB gene + 73085 74611 1527 Locate
psbT gene + 74796 74903 108 Locate
psbN gene − 74964 75095 132 Locate
psbH gene + 75199 75420 222 Locate
petB gene + 75545 76904 1360 Locate
petD gene + 77091 78288 1198 Locate
rpoA gene − 78663 79457 795 Locate
rps11 gene − 79529 79945 417 Locate
rpl36 gene − 80047 80160 114 Locate
infA gene − 80256 80489 234 Locate
rps8 gene − 80609 81019 411 Locate
rpl14 gene − 81184 81552 369 Locate
rpl16 gene − 81680 82896 1217 Locate
rps3 gene − 83002 83664 663 Locate
rpl22 gene − 83666 84121 456 Locate
rps19 gene − 84181 84459 279 Locate
rpl2 gene − 84514 85996 1483 Locate
rpl23 gene − 86015 86296 282 Locate
trnI-CAU gene − 86456 86529 74 Locate
ycf2 gene + 86618 93418 6801 Locate
ycf15 gene + 93560 93757 198 Locate
trnL-CAA gene − 94017 94097 81 Locate
ndhB gene − 94639 96850 2212 Locate
rps7 gene − 97125 97592 468 Locate
rps12 gene − 97646 98436 791 Locate
trnV-GAC gene + 99999 100070 72 Locate
rrn16 gene + 100297 101787 1491 Locate
trnI-GAU gene + 102086 103105 1020 Locate
trnA-UGC gene + 103170 104057 888 Locate
rrn23 gene + 104227 107038 2812 Locate
rrn4.5 gene + 107137 107239 103 Locate
rrn5 gene + 107487 107607 121 Locate
trnR-ACG gene + 107842 107915 74 Locate
trnN-GUU gene − 108472 108543 72 Locate
ndhF gene − 109619 111859 2241 Locate
rpl32 gene + 112375 112551 177 Locate
trnL-UAG gene + 112998 113077 80 Locate
ccsA gene + 113176 114150 975 Locate
ndhD gene − 114389 115891 1503 Locate
psaC gene − 116017 116262 246 Locate
ndhE gene − 116518 116823 306 Locate
ndhG gene − 117055 117585 531 Locate
ndhI gene − 117943 118443 501 Locate
ndhA gene − 118524 120609 2086 Locate
ndhH gene − 120611 121822 1212 Locate
rps15 gene − 121889 122161 273 Locate
ycf1 gene − 122434 127965 5532 Locate
trnN-GUU gene + 128294 128365 72 Locate
trnR-ACG gene − 128922 128995 74 Locate
rrn5 gene − 129230 129350 121 Locate
rrn4.5 gene − 129598 129700 103 Locate
rrn23 gene − 129799 132610 2812 Locate
trnA-UGC gene − 132780 133667 888 Locate
trnI-GAU gene − 133732 134751 1020 Locate
ycf68 gene − 134303 134596 294 Locate
rrn16 gene − 135050 136540 1491 Locate
trnV-GAC gene − 136767 136838 72 Locate
rps12 gene + 138401 139191 791 Locate
rps7 gene + 139245 139712 468 Locate
ndhB gene + 139987 142198 2212 Locate
trnL-CAA gene + 142740 142820 81 Locate
ycf15 gene − 143080 143277 198 Locate
ycf2 gene − 143419 150219 6801 Locate
trnI-CAU gene + 150308 150381 74 Locate
rpl23 gene + 150541 150822 282 Locate
rpl2 gene + 150841 152323 1483 Locate
Status Available
Accession PQ058256.1
Length 152,418 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources