Scutellaria prostrata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059300.1 · 4–77 bp · −
psbA · PQ059300.1 · 374–1,432 bp · −
trnK-UUU · PQ059300.1 · 1,674–4,255 bp · −
matK · PQ059300.1 · 1,964–3,490 bp · −
rps16 · PQ059300.1 · 5,157–6,317 bp · −
trnQ-UUG · PQ059300.1 · 7,063–7,134 bp · −
trnS-GCU · PQ059300.1 · 8,262–8,349 bp · −
atpA · PQ059300.1 · 10,137–11,660 bp · −
atpF · PQ059300.1 · 11,742–12,971 bp · −
atpH · PQ059300.1 · 13,332–13,577 bp · −
atpI · PQ059300.1 · 14,565–15,308 bp · −
rps2 · PQ059300.1 · 15,654–16,364 bp · −
rpoC2 · PQ059300.1 · 16,579–20,784 bp · −
rpoC1 · PQ059300.1 · 20,939–23,775 bp · −
rpoB · PQ059300.1 · 23,802–27,014 bp · −
psbM · PQ059300.1 · 30,122–30,226 bp · −
trnD-GUC · PQ059300.1 · 30,752–30,825 bp · −
trnY-GUA · PQ059300.1 · 30,939–31,022 bp · −
trnE-UUC · PQ059300.1 · 31,082–31,154 bp · −
trnS-UGA · PQ059300.1 · 35,773–35,864 bp · −
trnfM-CAU · PQ059300.1 · 36,860–36,933 bp · −
rps14 · PQ059300.1 · 37,088–37,390 bp · −
psaB · PQ059300.1 · 37,519–39,723 bp · −
psaA · PQ059300.1 · 39,749–42,001 bp · −
ycf3 · PQ059300.1 · 42,698–44,619 bp · −
rps4 · PQ059300.1 · 45,864–46,469 bp · −
trnT-UGU · PQ059300.1 · 46,815–46,887 bp · −
ndhJ · PQ059300.1 · 49,151–49,627 bp · −
ndhK · PQ059300.1 · 49,736–50,497 bp · −
ndhC · PQ059300.1 · 50,467–50,829 bp · −
trnV-UAC · PQ059300.1 · 51,815–52,467 bp · −
atpE · PQ059300.1 · 52,922–53,323 bp · −
atpB · PQ059300.1 · 53,320–54,816 bp · −
psbJ · PQ059300.1 · 64,556–64,678 bp · −
psbL · PQ059300.1 · 64,812–65,033 bp · −
psbF · PQ059300.1 · 64,952–65,071 bp · −
psbE · PQ059300.1 · 65,086–65,337 bp · −
trnW-CCA · PQ059300.1 · 66,718–66,791 bp · −
trnP-UGG · PQ059300.1 · 66,961–67,034 bp · −
rpl20 · PQ059300.1 · 68,831–69,217 bp · −
rps12 · PQ059300.1 · 69,999–70,124 bp · −
rps12 · PQ059300.1 · 97,273–98,063 bp · −
clpP · PQ059300.1 · 70,266–72,194 bp · −
psbN · PQ059300.1 · 74,533–74,664 bp · −
rpoA · PQ059300.1 · 78,227–79,027 bp · −
rps11 · PQ059300.1 · 79,099–79,515 bp · −
rpl36 · PQ059300.1 · 79,617–79,730 bp · −
infA · PQ059300.1 · 79,825–80,058 bp · −
rps8 · PQ059300.1 · 80,182–80,592 bp · −
rpl14 · PQ059300.1 · 80,745–81,113 bp · −
rpl16 · PQ059300.1 · 81,240–82,473 bp · −
rps3 · PQ059300.1 · 82,629–83,291 bp · −
rpl22 · PQ059300.1 · 83,293–83,748 bp · −
rps19 · PQ059300.1 · 83,808–84,086 bp · −
rpl2 · PQ059300.1 · 84,141–85,622 bp · −
rpl23 · PQ059300.1 · 85,641–85,922 bp · −
trnI-CAU · PQ059300.1 · 86,082–86,155 bp · −
trnL-CAA · PQ059300.1 · 93,643–93,723 bp · −
ndhB · PQ059300.1 · 94,266–96,477 bp · −
rps7 · PQ059300.1 · 96,752–97,219 bp · −
trnN-GUU · PQ059300.1 · 108,097–108,168 bp · −
ndhF · PQ059300.1 · 109,225–111,486 bp · −
ndhD · PQ059300.1 · 113,823–115,325 bp · −
psaC · PQ059300.1 · 115,453–115,698 bp · −
ndhE · PQ059300.1 · 115,954–116,259 bp · −
ndhG · PQ059300.1 · 116,476–117,006 bp · −
ndhI · PQ059300.1 · 117,373–117,873 bp · −
ndhA · PQ059300.1 · 117,959–120,080 bp · −
ndhH · PQ059300.1 · 120,082–121,263 bp · −
rps15 · PQ059300.1 · 121,351–121,623 bp · −
ycf1 · PQ059300.1 · 121,823–127,459 bp · −
trnR-ACG · PQ059300.1 · 128,298–128,371 bp · −
rrn5 · PQ059300.1 · 128,606–128,726 bp · −
rrn4.5 · PQ059300.1 · 128,974–129,076 bp · −
rrn23 · PQ059300.1 · 129,175–131,986 bp · −
trnA-UGC · PQ059300.1 · 132,156–133,039 bp · −
trnI-GAU · PQ059300.1 · 133,104–134,124 bp · −
ycf68 · PQ059300.1 · 133,676–133,969 bp · −
rrn16 · PQ059300.1 · 134,423–135,913 bp · −
trnV-GAC · PQ059300.1 · 136,140–136,211 bp · −
ycf15 · PQ059300.1 · 142,463–142,660 bp · −
ycf2 · PQ059300.1 · 142,802–149,602 bp · −
psbK · PQ059300.1 · 7,459–7,644 bp · +
psbI · PQ059300.1 · 8,035–8,145 bp · +
trnG-UCC · PQ059300.1 · 9,036–9,794 bp · +
trnR-UCU · PQ059300.1 · 9,969–10,040 bp · +
trnC-GCA · PQ059300.1 · 28,177–28,247 bp · +
petN · PQ059300.1 · 28,963–29,052 bp · +
trnT-GGU · PQ059300.1 · 31,730–31,801 bp · +
psbD · PQ059300.1 · 33,107–34,168 bp · +
psbC · PQ059300.1 · 34,116–35,537 bp · +
psbZ · PQ059300.1 · 36,180–36,368 bp · +
trnG-GCC · PQ059300.1 · 36,642–36,712 bp · +
trnS-GGA · PQ059300.1 · 45,502–45,588 bp · +
trnL-UAA · PQ059300.1 · 47,568–48,127 bp · +
trnF-GAA · PQ059300.1 · 48,428–48,500 bp · +
trnM-CAU · PQ059300.1 · 52,656–52,728 bp · +
rbcL · PQ059300.1 · 55,568–57,031 bp · +
accD · PQ059300.1 · 57,746–59,224 bp · +
psaI · PQ059300.1 · 59,931–60,041 bp · +
ycf4 · PQ059300.1 · 60,475–61,029 bp · +
cemA · PQ059300.1 · 61,777–62,376 bp · +
petA · PQ059300.1 · 62,583–63,545 bp · +
petL · PQ059300.1 · 66,215–66,310 bp · +
petG · PQ059300.1 · 66,486–66,599 bp · +
psaJ · PQ059300.1 · 67,306–67,440 bp · +
rpl33 · PQ059300.1 · 67,916–68,116 bp · +
rps18 · PQ059300.1 · 68,291–68,596 bp · +
rps12 · PQ059300.1 · 137,783–138,573 bp · +
psbB · PQ059300.1 · 72,646–74,172 bp · +
psbT · PQ059300.1 · 74,365–74,472 bp · +
psbH · PQ059300.1 · 74,768–74,989 bp · +
petB · PQ059300.1 · 75,114–76,483 bp · +
petD · PQ059300.1 · 76,666–77,872 bp · +
ycf2 · PQ059300.1 · 86,244–93,044 bp · +
ycf15 · PQ059300.1 · 93,186–93,383 bp · +
trnV-GAC · PQ059300.1 · 99,635–99,706 bp · +
rrn16 · PQ059300.1 · 99,933–101,423 bp · +
trnI-GAU · PQ059300.1 · 101,722–102,742 bp · +
trnA-UGC · PQ059300.1 · 102,807–103,690 bp · +
rrn23 · PQ059300.1 · 103,860–106,671 bp · +
rrn4.5 · PQ059300.1 · 106,770–106,872 bp · +
rrn5 · PQ059300.1 · 107,120–107,240 bp · +
trnR-ACG · PQ059300.1 · 107,475–107,548 bp · +
rpl32 · PQ059300.1 · 111,814–111,990 bp · +
trnL-UAG · PQ059300.1 · 112,440–112,519 bp · +
ccsA · PQ059300.1 · 112,608–113,582 bp · +
trnN-GUU · PQ059300.1 · 127,678–127,749 bp · +
rps7 · PQ059300.1 · 138,627–139,094 bp · +
ndhB · PQ059300.1 · 139,369–141,580 bp · +
trnL-CAA · PQ059300.1 · 142,123–142,203 bp · +
trnI-CAU · PQ059300.1 · 149,691–149,764 bp · +
rpl23 · PQ059300.1 · 149,924–150,205 bp · +
rpl2 · PQ059300.1 · 150,224–151,705 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria prostrata
ANNOTATED PLASTOME
PQ059300.1
151,805 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37951 75902 113854 151805 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7063 7134 72 Locate
psbK gene + 7459 7644 186 Locate
psbI gene + 8035 8145 111 Locate
trnS-GCU gene − 8262 8349 88 Locate
trnG-UCC gene + 9036 9794 759 Locate
trnR-UCU gene + 9969 10040 72 Locate
atpA gene − 10137 11660 1524 Locate
atpF gene − 11742 12971 1230 Locate
atpH gene − 13332 13577 246 Locate
atpI gene − 14565 15308 744 Locate
rps2 gene − 15654 16364 711 Locate
rpoC2 gene − 16579 20784 4206 Locate
rpoC1 gene − 20939 23775 2837 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28177 28247 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30122 30226 105 Locate
trnD-GUC gene − 30752 30825 74 Locate
trnY-GUA gene − 30939 31022 84 Locate
trnE-UUC gene − 31082 31154 73 Locate
trnT-GGU gene + 31730 31801 72 Locate
psbD gene + 33107 34168 1062 Locate
psbC gene + 34116 35537 1422 Locate
trnS-UGA gene − 35773 35864 92 Locate
psbZ gene + 36180 36368 189 Locate
trnG-GCC gene + 36642 36712 71 Locate
trnfM-CAU gene − 36860 36933 74 Locate
rps14 gene − 37088 37390 303 Locate
psaB gene − 37519 39723 2205 Locate
psaA gene − 39749 42001 2253 Locate
ycf3 gene − 42698 44619 1922 Locate
trnS-GGA gene + 45502 45588 87 Locate
rps4 gene − 45864 46469 606 Locate
trnT-UGU gene − 46815 46887 73 Locate
trnL-UAA gene + 47568 48127 560 Locate
trnF-GAA gene + 48428 48500 73 Locate
ndhJ gene − 49151 49627 477 Locate
ndhK gene − 49736 50497 762 Locate
ndhC gene − 50467 50829 363 Locate
trnV-UAC gene − 51815 52467 653 Locate
trnM-CAU gene + 52656 52728 73 Locate
atpE gene − 52922 53323 402 Locate
atpB gene − 53320 54816 1497 Locate
rbcL gene + 55568 57031 1464 Locate
accD gene + 57746 59224 1479 Locate
psaI gene + 59931 60041 111 Locate
ycf4 gene + 60475 61029 555 Locate
cemA gene + 61777 62376 600 Locate
petA gene + 62583 63545 963 Locate
psbJ gene − 64556 64678 123 Locate
psbL gene − 64812 65033 222 Locate
psbF gene − 64952 65071 120 Locate
psbE gene − 65086 65337 252 Locate
petL gene + 66215 66310 96 Locate
petG gene + 66486 66599 114 Locate
trnW-CCA gene − 66718 66791 74 Locate
trnP-UGG gene − 66961 67034 74 Locate
psaJ gene + 67306 67440 135 Locate
rpl33 gene + 67916 68116 201 Locate
rps18 gene + 68291 68596 306 Locate
rpl20 gene − 68831 69217 387 Locate
rps12 gene − 69999 70124 126 Locate
clpP gene − 70266 72194 1929 Locate
psbB gene + 72646 74172 1527 Locate
psbT gene + 74365 74472 108 Locate
psbN gene − 74533 74664 132 Locate
psbH gene + 74768 74989 222 Locate
petB gene + 75114 76483 1370 Locate
petD gene + 76666 77872 1207 Locate
rpoA gene − 78227 79027 801 Locate
rps11 gene − 79099 79515 417 Locate
rpl36 gene − 79617 79730 114 Locate
infA gene − 79825 80058 234 Locate
rps8 gene − 80182 80592 411 Locate
rpl14 gene − 80745 81113 369 Locate
rpl16 gene − 81240 82473 1234 Locate
rps3 gene − 82629 83291 663 Locate
rpl22 gene − 83293 83748 456 Locate
rps19 gene − 83808 84086 279 Locate
rpl2 gene − 84141 85622 1482 Locate
rpl23 gene − 85641 85922 282 Locate
trnI-CAU gene − 86082 86155 74 Locate
ycf2 gene + 86244 93044 6801 Locate
ycf15 gene + 93186 93383 198 Locate
trnL-CAA gene − 93643 93723 81 Locate
ndhB gene − 94266 96477 2212 Locate
rps7 gene − 96752 97219 468 Locate
rps12 gene − 97273 98063 791 Locate
trnV-GAC gene + 99635 99706 72 Locate
rrn16 gene + 99933 101423 1491 Locate
trnI-GAU gene + 101722 102742 1021 Locate
trnA-UGC gene + 102807 103690 884 Locate
rrn23 gene + 103860 106671 2812 Locate
rrn4.5 gene + 106770 106872 103 Locate
rrn5 gene + 107120 107240 121 Locate
trnR-ACG gene + 107475 107548 74 Locate
trnN-GUU gene − 108097 108168 72 Locate
ndhF gene − 109225 111486 2262 Locate
rpl32 gene + 111814 111990 177 Locate
trnL-UAG gene + 112440 112519 80 Locate
ccsA gene + 112608 113582 975 Locate
ndhD gene − 113823 115325 1503 Locate
psaC gene − 115453 115698 246 Locate
ndhE gene − 115954 116259 306 Locate
ndhG gene − 116476 117006 531 Locate
ndhI gene − 117373 117873 501 Locate
ndhA gene − 117959 120080 2122 Locate
ndhH gene − 120082 121263 1182 Locate
rps15 gene − 121351 121623 273 Locate
ycf1 gene − 121823 127459 5637 Locate
trnN-GUU gene + 127678 127749 72 Locate
trnR-ACG gene − 128298 128371 74 Locate
rrn5 gene − 128606 128726 121 Locate
rrn4.5 gene − 128974 129076 103 Locate
rrn23 gene − 129175 131986 2812 Locate
trnA-UGC gene − 132156 133039 884 Locate
trnI-GAU gene − 133104 134124 1021 Locate
ycf68 gene − 133676 133969 294 Locate
rrn16 gene − 134423 135913 1491 Locate
trnV-GAC gene − 136140 136211 72 Locate
rps12 gene + 137783 138573 791 Locate
rps7 gene + 138627 139094 468 Locate
ndhB gene + 139369 141580 2212 Locate
trnL-CAA gene + 142123 142203 81 Locate
ycf15 gene − 142463 142660 198 Locate
ycf2 gene − 142802 149602 6801 Locate
trnI-CAU gene + 149691 149764 74 Locate
rpl23 gene + 149924 150205 282 Locate
rpl2 gene + 150224 151705 1482 Locate
Status Available
Accession PQ059300.1
Length 151,805 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources