Scutellaria purpurascens subsp. purpurascens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058269.1 · 3–76 bp · −
psbA · PQ058269.1 · 377–1,435 bp · −
trnK-UUU · PQ058269.1 · 1,676–4,265 bp · −
matK · PQ058269.1 · 1,971–3,515 bp · −
rps16 · PQ058269.1 · 5,188–6,315 bp · −
trnQ-UUG · PQ058269.1 · 7,447–7,518 bp · −
trnS-GCU · PQ058269.1 · 8,644–8,731 bp · −
atpA · PQ058269.1 · 10,531–12,054 bp · −
atpF · PQ058269.1 · 12,137–13,365 bp · −
atpH · PQ058269.1 · 13,722–13,967 bp · −
atpI · PQ058269.1 · 14,951–15,694 bp · −
rps2 · PQ058269.1 · 16,037–16,873 bp · −
rpoC2 · PQ058269.1 · 16,964–21,172 bp · −
rpoC1 · PQ058269.1 · 21,318–24,153 bp · −
rpoB · PQ058269.1 · 24,180–27,392 bp · −
psbM · PQ058269.1 · 30,216–30,329 bp · −
trnD-GUC · PQ058269.1 · 30,856–30,929 bp · −
trnY-GUA · PQ058269.1 · 31,043–31,126 bp · −
trnE-UUC · PQ058269.1 · 31,186–31,258 bp · −
trnS-UGA · PQ058269.1 · 35,881–35,972 bp · −
trnfM-CAU · PQ058269.1 · 36,974–37,047 bp · −
rps14 · PQ058269.1 · 37,197–37,499 bp · −
psaB · PQ058269.1 · 37,627–39,831 bp · −
psaA · PQ058269.1 · 39,857–42,109 bp · −
ycf3 · PQ058269.1 · 42,799–44,723 bp · −
rps4 · PQ058269.1 · 45,986–46,591 bp · −
trnT-UGU · PQ058269.1 · 46,928–47,000 bp · −
ndhJ · PQ058269.1 · 49,293–49,769 bp · −
ndhK · PQ058269.1 · 49,877–50,638 bp · −
ndhC · PQ058269.1 · 50,608–50,970 bp · −
trnV-UAC · PQ058269.1 · 51,427–52,080 bp · −
atpE · PQ058269.1 · 52,542–52,943 bp · −
atpB · PQ058269.1 · 52,940–54,436 bp · −
psbJ · PQ058269.1 · 64,175–64,297 bp · −
psbL · PQ058269.1 · 64,431–64,547 bp · −
psbF · PQ058269.1 · 64,571–64,690 bp · −
psbE · PQ058269.1 · 64,705–64,956 bp · −
trnW-CCA · PQ058269.1 · 66,366–66,439 bp · −
trnP-UGG · PQ058269.1 · 66,609–66,682 bp · −
rpl20 · PQ058269.1 · 68,491–68,877 bp · −
rps12 · PQ058269.1 · 69,661–69,786 bp · −
rps12 · PQ058269.1 · 97,005–97,795 bp · −
clpP · PQ058269.1 · 69,929–71,871 bp · −
psbN · PQ058269.1 · 74,221–74,352 bp · −
rpoA · PQ058269.1 · 77,730–78,737 bp · −
rps11 · PQ058269.1 · 78,821–79,237 bp · −
rpl36 · PQ058269.1 · 79,338–79,451 bp · −
infA · PQ058269.1 · 79,547–79,780 bp · −
rps8 · PQ058269.1 · 79,892–80,290 bp · −
rpl14 · PQ058269.1 · 80,461–80,829 bp · −
rpl16 · PQ058269.1 · 80,941–82,207 bp · −
rps3 · PQ058269.1 · 82,363–83,025 bp · −
rpl22 · PQ058269.1 · 83,052–83,483 bp · −
rps19 · PQ058269.1 · 83,543–83,821 bp · −
rpl2 · PQ058269.1 · 83,876–85,358 bp · −
rpl23 · PQ058269.1 · 85,377–85,658 bp · −
trnI-CAU · PQ058269.1 · 85,818–85,891 bp · −
trnL-CAA · PQ058269.1 · 93,384–93,464 bp · −
ndhB · PQ058269.1 · 93,998–96,155 bp · −
rps7 · PQ058269.1 · 96,484–96,951 bp · −
trnN-GUU · PQ058269.1 · 107,845–107,916 bp · −
ndhF · PQ058269.1 · 108,993–111,218 bp · −
ndhD · PQ058269.1 · 113,725–115,254 bp · −
psaC · PQ058269.1 · 115,354–115,599 bp · −
ndhE · PQ058269.1 · 115,855–116,160 bp · −
ndhG · PQ058269.1 · 116,382–116,912 bp · −
ndhI · PQ058269.1 · 117,276–117,776 bp · −
ndhA · PQ058269.1 · 117,857–119,960 bp · −
ndhH · PQ058269.1 · 119,962–121,143 bp · −
rps15 · PQ058269.1 · 121,231–121,581 bp · −
ycf1 · PQ058269.1 · 121,805–127,228 bp · −
trnR-ACG · PQ058269.1 · 128,186–128,259 bp · −
rrn5 · PQ058269.1 · 128,494–128,614 bp · −
rrn4.5 · PQ058269.1 · 128,862–128,964 bp · −
rrn23 · PQ058269.1 · 129,063–131,875 bp · −
trnA-UGC · PQ058269.1 · 132,045–132,942 bp · −
trnI-GAU · PQ058269.1 · 133,007–134,026 bp · −
ycf68 · PQ058269.1 · 133,578–133,871 bp · −
rrn16 · PQ058269.1 · 134,325–135,815 bp · −
trnV-GAC · PQ058269.1 · 136,043–136,114 bp · −
ycf15 · PQ058269.1 · 142,346–142,594 bp · −
ycf2 · PQ058269.1 · 142,685–149,494 bp · −
psbK · PQ058269.1 · 7,844–8,029 bp · +
psbI · PQ058269.1 · 8,424–8,534 bp · +
trnG-UCC · PQ058269.1 · 9,431–10,188 bp · +
trnR-UCU · PQ058269.1 · 10,363–10,434 bp · +
trnC-GCA · PQ058269.1 · 28,350–28,420 bp · +
petN · PQ058269.1 · 29,132–29,221 bp · +
trnT-GGU · PQ058269.1 · 31,822–31,893 bp · +
psbD · PQ058269.1 · 33,206–34,267 bp · +
psbC · PQ058269.1 · 34,215–35,636 bp · +
psbZ · PQ058269.1 · 36,292–36,480 bp · +
trnG-GCC · PQ058269.1 · 36,758–36,828 bp · +
trnS-GGA · PQ058269.1 · 45,606–45,692 bp · +
trnL-UAA · PQ058269.1 · 47,700–48,267 bp · +
trnF-GAA · PQ058269.1 · 48,573–48,645 bp · +
trnM-CAU · PQ058269.1 · 52,261–52,333 bp · +
rbcL · PQ058269.1 · 55,188–56,648 bp · +
accD · PQ058269.1 · 57,349–58,827 bp · +
psaI · PQ058269.1 · 59,557–59,667 bp · +
ycf4 · PQ058269.1 · 60,101–60,655 bp · +
cemA · PQ058269.1 · 61,396–61,995 bp · +
petA · PQ058269.1 · 62,202–63,164 bp · +
petL · PQ058269.1 · 65,863–65,958 bp · +
petG · PQ058269.1 · 66,134–66,247 bp · +
psaJ · PQ058269.1 · 66,955–67,089 bp · +
rpl33 · PQ058269.1 · 67,573–67,773 bp · +
rps18 · PQ058269.1 · 67,949–68,254 bp · +
rps12 · PQ058269.1 · 137,679–138,469 bp · +
psbB · PQ058269.1 · 72,334–73,860 bp · +
psbT · PQ058269.1 · 74,053–74,160 bp · +
psbH · PQ058269.1 · 74,456–74,677 bp · +
petB · PQ058269.1 · 74,803–76,175 bp · +
petD · PQ058269.1 · 76,364–77,567 bp · +
ycf2 · PQ058269.1 · 85,980–92,789 bp · +
ycf15 · PQ058269.1 · 92,880–93,128 bp · +
trnV-GAC · PQ058269.1 · 99,360–99,431 bp · +
rrn16 · PQ058269.1 · 99,659–101,149 bp · +
trnI-GAU · PQ058269.1 · 101,448–102,467 bp · +
trnA-UGC · PQ058269.1 · 102,532–103,429 bp · +
rrn23 · PQ058269.1 · 103,599–106,411 bp · +
rrn4.5 · PQ058269.1 · 106,510–106,612 bp · +
rrn5 · PQ058269.1 · 106,860–106,980 bp · +
trnR-ACG · PQ058269.1 · 107,215–107,288 bp · +
rpl32 · PQ058269.1 · 111,736–111,912 bp · +
trnL-UAG · PQ058269.1 · 112,332–112,411 bp · +
ccsA · PQ058269.1 · 112,459–113,490 bp · +
trnN-GUU · PQ058269.1 · 127,558–127,629 bp · +
rps7 · PQ058269.1 · 138,523–138,990 bp · +
ndhB · PQ058269.1 · 139,319–141,476 bp · +
trnL-CAA · PQ058269.1 · 142,010–142,090 bp · +
trnI-CAU · PQ058269.1 · 149,583–149,656 bp · +
rpl23 · PQ058269.1 · 149,816–150,097 bp · +
rpl2 · PQ058269.1 · 150,116–151,598 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria purpurascens subsp. purpurascens
ANNOTATED PLASTOME
PQ058269.1
151,693 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37923 75846 113770 151693 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1676 4265 2590 Locate
matK gene − 1971 3515 1545 Locate
rps16 gene − 5188 6315 1128 Locate
trnQ-UUG gene − 7447 7518 72 Locate
psbK gene + 7844 8029 186 Locate
psbI gene + 8424 8534 111 Locate
trnS-GCU gene − 8644 8731 88 Locate
trnG-UCC gene + 9431 10188 758 Locate
trnR-UCU gene + 10363 10434 72 Locate
atpA gene − 10531 12054 1524 Locate
atpF gene − 12137 13365 1229 Locate
atpH gene − 13722 13967 246 Locate
atpI gene − 14951 15694 744 Locate
rps2 gene − 16037 16873 837 Locate
rpoC2 gene − 16964 21172 4209 Locate
rpoC1 gene − 21318 24153 2836 Locate
rpoB gene − 24180 27392 3213 Locate
trnC-GCA gene + 28350 28420 71 Locate
petN gene + 29132 29221 90 Locate
psbM gene − 30216 30329 114 Locate
trnD-GUC gene − 30856 30929 74 Locate
trnY-GUA gene − 31043 31126 84 Locate
trnE-UUC gene − 31186 31258 73 Locate
trnT-GGU gene + 31822 31893 72 Locate
psbD gene + 33206 34267 1062 Locate
psbC gene + 34215 35636 1422 Locate
trnS-UGA gene − 35881 35972 92 Locate
psbZ gene + 36292 36480 189 Locate
trnG-GCC gene + 36758 36828 71 Locate
trnfM-CAU gene − 36974 37047 74 Locate
rps14 gene − 37197 37499 303 Locate
psaB gene − 37627 39831 2205 Locate
psaA gene − 39857 42109 2253 Locate
ycf3 gene − 42799 44723 1925 Locate
trnS-GGA gene + 45606 45692 87 Locate
rps4 gene − 45986 46591 606 Locate
trnT-UGU gene − 46928 47000 73 Locate
trnL-UAA gene + 47700 48267 568 Locate
trnF-GAA gene + 48573 48645 73 Locate
ndhJ gene − 49293 49769 477 Locate
ndhK gene − 49877 50638 762 Locate
ndhC gene − 50608 50970 363 Locate
trnV-UAC gene − 51427 52080 654 Locate
trnM-CAU gene + 52261 52333 73 Locate
atpE gene − 52542 52943 402 Locate
atpB gene − 52940 54436 1497 Locate
rbcL gene + 55188 56648 1461 Locate
accD gene + 57349 58827 1479 Locate
psaI gene + 59557 59667 111 Locate
ycf4 gene + 60101 60655 555 Locate
cemA gene + 61396 61995 600 Locate
petA gene + 62202 63164 963 Locate
psbJ gene − 64175 64297 123 Locate
psbL gene − 64431 64547 117 Locate
psbF gene − 64571 64690 120 Locate
psbE gene − 64705 64956 252 Locate
petL gene + 65863 65958 96 Locate
petG gene + 66134 66247 114 Locate
trnW-CCA gene − 66366 66439 74 Locate
trnP-UGG gene − 66609 66682 74 Locate
psaJ gene + 66955 67089 135 Locate
rpl33 gene + 67573 67773 201 Locate
rps18 gene + 67949 68254 306 Locate
rpl20 gene − 68491 68877 387 Locate
rps12 gene − 69661 69786 126 Locate
clpP gene − 69929 71871 1943 Locate
psbB gene + 72334 73860 1527 Locate
psbT gene + 74053 74160 108 Locate
psbN gene − 74221 74352 132 Locate
psbH gene + 74456 74677 222 Locate
petB gene + 74803 76175 1373 Locate
petD gene + 76364 77567 1204 Locate
rpoA gene − 77730 78737 1008 Locate
rps11 gene − 78821 79237 417 Locate
rpl36 gene − 79338 79451 114 Locate
infA gene − 79547 79780 234 Locate
rps8 gene − 79892 80290 399 Locate
rpl14 gene − 80461 80829 369 Locate
rpl16 gene − 80941 82207 1267 Locate
rps3 gene − 82363 83025 663 Locate
rpl22 gene − 83052 83483 432 Locate
rps19 gene − 83543 83821 279 Locate
rpl2 gene − 83876 85358 1483 Locate
rpl23 gene − 85377 85658 282 Locate
trnI-CAU gene − 85818 85891 74 Locate
ycf2 gene + 85980 92789 6810 Locate
ycf15 gene + 92880 93128 249 Locate
trnL-CAA gene − 93384 93464 81 Locate
ndhB gene − 93998 96155 2158 Locate
rps7 gene − 96484 96951 468 Locate
rps12 gene − 97005 97795 791 Locate
trnV-GAC gene + 99360 99431 72 Locate
rrn16 gene + 99659 101149 1491 Locate
trnI-GAU gene + 101448 102467 1020 Locate
trnA-UGC gene + 102532 103429 898 Locate
rrn23 gene + 103599 106411 2813 Locate
rrn4.5 gene + 106510 106612 103 Locate
rrn5 gene + 106860 106980 121 Locate
trnR-ACG gene + 107215 107288 74 Locate
trnN-GUU gene − 107845 107916 72 Locate
ndhF gene − 108993 111218 2226 Locate
rpl32 gene + 111736 111912 177 Locate
trnL-UAG gene + 112332 112411 80 Locate
ccsA gene + 112459 113490 1032 Locate
ndhD gene − 113725 115254 1530 Locate
psaC gene − 115354 115599 246 Locate
ndhE gene − 115855 116160 306 Locate
ndhG gene − 116382 116912 531 Locate
ndhI gene − 117276 117776 501 Locate
ndhA gene − 117857 119960 2104 Locate
ndhH gene − 119962 121143 1182 Locate
rps15 gene − 121231 121581 351 Locate
ycf1 gene − 121805 127228 5424 Locate
trnN-GUU gene + 127558 127629 72 Locate
trnR-ACG gene − 128186 128259 74 Locate
rrn5 gene − 128494 128614 121 Locate
rrn4.5 gene − 128862 128964 103 Locate
rrn23 gene − 129063 131875 2813 Locate
trnA-UGC gene − 132045 132942 898 Locate
trnI-GAU gene − 133007 134026 1020 Locate
ycf68 gene − 133578 133871 294 Locate
rrn16 gene − 134325 135815 1491 Locate
trnV-GAC gene − 136043 136114 72 Locate
rps12 gene + 137679 138469 791 Locate
rps7 gene + 138523 138990 468 Locate
ndhB gene + 139319 141476 2158 Locate
trnL-CAA gene + 142010 142090 81 Locate
ycf15 gene − 142346 142594 249 Locate
ycf2 gene − 142685 149494 6810 Locate
trnI-CAU gene + 149583 149656 74 Locate
rpl23 gene + 149816 150097 282 Locate
rpl2 gene + 150116 151598 1483 Locate
Status Available
Accession PQ058269.1
Length 151,693 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources