Scutellaria purpurascens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058276.1 · 3–76 bp · −
psbA · PQ058276.1 · 376–1,434 bp · −
trnK-UUU · PQ058276.1 · 1,675–4,271 bp · −
matK · PQ058276.1 · 1,970–3,514 bp · −
rps16 · PQ058276.1 · 5,178–6,303 bp · −
trnQ-UUG · PQ058276.1 · 7,433–7,504 bp · −
trnS-GCU · PQ058276.1 · 8,629–8,716 bp · −
atpA · PQ058276.1 · 10,500–12,023 bp · −
atpF · PQ058276.1 · 12,106–13,335 bp · −
atpH · PQ058276.1 · 13,697–13,942 bp · −
atpI · PQ058276.1 · 14,923–15,666 bp · −
rps2 · PQ058276.1 · 16,009–16,719 bp · −
rpoC2 · PQ058276.1 · 16,947–21,152 bp · −
rpoC1 · PQ058276.1 · 21,298–24,133 bp · −
rpoB · PQ058276.1 · 24,160–27,372 bp · −
psbM · PQ058276.1 · 30,413–30,526 bp · −
trnD-GUC · PQ058276.1 · 31,054–31,127 bp · −
trnY-GUA · PQ058276.1 · 31,241–31,324 bp · −
trnE-UUC · PQ058276.1 · 31,384–31,456 bp · −
trnS-UGA · PQ058276.1 · 36,083–36,174 bp · −
trnfM-CAU · PQ058276.1 · 37,168–37,241 bp · −
rps14 · PQ058276.1 · 37,391–37,693 bp · −
psaB · PQ058276.1 · 37,821–40,025 bp · −
psaA · PQ058276.1 · 40,051–42,303 bp · −
ycf3 · PQ058276.1 · 43,001–44,927 bp · −
rps4 · PQ058276.1 · 46,182–46,787 bp · −
trnT-UGU · PQ058276.1 · 47,121–47,193 bp · −
ndhJ · PQ058276.1 · 49,438–49,914 bp · −
ndhK · PQ058276.1 · 50,022–50,699 bp · −
ndhC · PQ058276.1 · 50,752–51,114 bp · −
trnV-UAC · PQ058276.1 · 51,572–52,225 bp · −
atpE · PQ058276.1 · 52,692–53,093 bp · −
atpB · PQ058276.1 · 53,090–54,586 bp · −
psbJ · PQ058276.1 · 64,337–64,459 bp · −
psbL · PQ058276.1 · 64,594–64,815 bp · −
psbF · PQ058276.1 · 64,734–64,853 bp · −
psbE · PQ058276.1 · 64,868–65,119 bp · −
trnW-CCA · PQ058276.1 · 66,519–66,592 bp · −
trnP-UGG · PQ058276.1 · 66,762–66,835 bp · −
rpl20 · PQ058276.1 · 68,660–69,046 bp · −
rps12 · PQ058276.1 · 69,835–69,960 bp · −
rps12 · PQ058276.1 · 97,191–97,981 bp · −
clpP · PQ058276.1 · 70,101–72,043 bp · −
psbN · PQ058276.1 · 74,409–74,540 bp · −
rpoA · PQ058276.1 · 77,924–78,934 bp · −
rps11 · PQ058276.1 · 79,006–79,422 bp · −
rpl36 · PQ058276.1 · 79,523–79,636 bp · −
infA · PQ058276.1 · 79,732–79,965 bp · −
rps8 · PQ058276.1 · 80,083–80,493 bp · −
rpl14 · PQ058276.1 · 80,662–81,030 bp · −
rpl16 · PQ058276.1 · 81,142–82,396 bp · −
rps3 · PQ058276.1 · 82,544–83,206 bp · −
rpl22 · PQ058276.1 · 83,233–83,664 bp · −
rps19 · PQ058276.1 · 83,724–84,002 bp · −
rpl2 · PQ058276.1 · 84,057–85,539 bp · −
rpl23 · PQ058276.1 · 85,558–85,839 bp · −
trnI-CAU · PQ058276.1 · 85,999–86,072 bp · −
trnL-CAA · PQ058276.1 · 93,570–93,650 bp · −
ndhB · PQ058276.1 · 94,184–96,395 bp · −
rps7 · PQ058276.1 · 96,670–97,137 bp · −
trnN-GUU · PQ058276.1 · 108,069–108,140 bp · −
ndhF · PQ058276.1 · 109,217–111,448 bp · −
ndhD · PQ058276.1 · 113,973–115,502 bp · −
psaC · PQ058276.1 · 115,602–115,847 bp · −
ndhE · PQ058276.1 · 116,086–116,391 bp · −
ndhG · PQ058276.1 · 116,613–117,143 bp · −
ndhI · PQ058276.1 · 117,504–118,004 bp · −
ndhA · PQ058276.1 · 118,085–120,181 bp · −
ndhH · PQ058276.1 · 120,183–121,394 bp · −
rps15 · PQ058276.1 · 121,453–121,725 bp · −
ycf1 · PQ058276.1 · 122,013–127,436 bp · −
trnR-ACG · PQ058276.1 · 128,436–128,509 bp · −
rrn5 · PQ058276.1 · 128,744–128,864 bp · −
rrn4.5 · PQ058276.1 · 129,112–129,214 bp · −
rrn23 · PQ058276.1 · 129,313–132,125 bp · −
trnA-UGC · PQ058276.1 · 132,295–133,177 bp · −
trnI-GAU · PQ058276.1 · 133,242–134,266 bp · −
ycf68 · PQ058276.1 · 133,818–134,111 bp · −
rrn16 · PQ058276.1 · 134,565–136,055 bp · −
trnV-GAC · PQ058276.1 · 136,283–136,354 bp · −
ycf15 · PQ058276.1 · 142,597–142,794 bp · −
ycf2 · PQ058276.1 · 142,936–149,745 bp · −
psbK · PQ058276.1 · 7,829–8,014 bp · +
psbI · PQ058276.1 · 8,408–8,518 bp · +
trnG-UCC · PQ058276.1 · 9,401–10,157 bp · +
trnR-UCU · PQ058276.1 · 10,332–10,403 bp · +
trnC-GCA · PQ058276.1 · 28,535–28,605 bp · +
petN · PQ058276.1 · 29,316–29,405 bp · +
trnT-GGU · PQ058276.1 · 32,020–32,091 bp · +
psbD · PQ058276.1 · 33,408–34,469 bp · +
psbC · PQ058276.1 · 34,417–35,838 bp · +
psbZ · PQ058276.1 · 36,494–36,682 bp · +
trnG-GCC · PQ058276.1 · 36,954–37,024 bp · +
trnS-GGA · PQ058276.1 · 45,812–45,898 bp · +
trnL-UAA · PQ058276.1 · 47,868–48,433 bp · +
trnF-GAA · PQ058276.1 · 48,722–48,794 bp · +
trnM-CAU · PQ058276.1 · 52,411–52,483 bp · +
rbcL · PQ058276.1 · 55,340–56,800 bp · +
accD · PQ058276.1 · 57,517–58,995 bp · +
psaI · PQ058276.1 · 59,706–59,816 bp · +
ycf4 · PQ058276.1 · 60,250–60,804 bp · +
cemA · PQ058276.1 · 61,545–62,144 bp · +
petA · PQ058276.1 · 62,351–63,313 bp · +
petL · PQ058276.1 · 66,025–66,120 bp · +
petG · PQ058276.1 · 66,296–66,409 bp · +
psaJ · PQ058276.1 · 67,109–67,243 bp · +
rpl33 · PQ058276.1 · 67,722–67,922 bp · +
rps18 · PQ058276.1 · 68,119–68,424 bp · +
rps12 · PQ058276.1 · 137,925–138,715 bp · +
psbB · PQ058276.1 · 72,513–74,039 bp · +
psbT · PQ058276.1 · 74,240–74,347 bp · +
psbH · PQ058276.1 · 74,644–74,865 bp · +
petB · PQ058276.1 · 74,991–76,360 bp · +
petD · PQ058276.1 · 76,549–77,761 bp · +
ycf2 · PQ058276.1 · 86,161–92,970 bp · +
ycf15 · PQ058276.1 · 93,112–93,309 bp · +
trnV-GAC · PQ058276.1 · 99,552–99,623 bp · +
rrn16 · PQ058276.1 · 99,851–101,341 bp · +
trnI-GAU · PQ058276.1 · 101,640–102,664 bp · +
trnA-UGC · PQ058276.1 · 102,729–103,611 bp · +
rrn23 · PQ058276.1 · 103,781–106,593 bp · +
rrn4.5 · PQ058276.1 · 106,692–106,794 bp · +
rrn5 · PQ058276.1 · 107,042–107,162 bp · +
trnR-ACG · PQ058276.1 · 107,397–107,470 bp · +
rpl32 · PQ058276.1 · 111,967–112,143 bp · +
trnL-UAG · PQ058276.1 · 112,580–112,659 bp · +
ccsA · PQ058276.1 · 112,766–113,743 bp · +
trnN-GUU · PQ058276.1 · 127,766–127,837 bp · +
rps7 · PQ058276.1 · 138,769–139,236 bp · +
ndhB · PQ058276.1 · 139,511–141,722 bp · +
trnL-CAA · PQ058276.1 · 142,256–142,336 bp · +
trnI-CAU · PQ058276.1 · 149,834–149,907 bp · +
rpl23 · PQ058276.1 · 150,067–150,348 bp · +
rpl2 · PQ058276.1 · 150,367–151,849 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria purpurascens
ANNOTATED PLASTOME
PQ058276.1
151,944 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37986 75972 113958 151944 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 376 1434 1059 Locate
trnK-UUU gene − 1675 4271 2597 Locate
matK gene − 1970 3514 1545 Locate
rps16 gene − 5178 6303 1126 Locate
trnQ-UUG gene − 7433 7504 72 Locate
psbK gene + 7829 8014 186 Locate
psbI gene + 8408 8518 111 Locate
trnS-GCU gene − 8629 8716 88 Locate
trnG-UCC gene + 9401 10157 757 Locate
trnR-UCU gene + 10332 10403 72 Locate
atpA gene − 10500 12023 1524 Locate
atpF gene − 12106 13335 1230 Locate
atpH gene − 13697 13942 246 Locate
atpI gene − 14923 15666 744 Locate
rps2 gene − 16009 16719 711 Locate
rpoC2 gene − 16947 21152 4206 Locate
rpoC1 gene − 21298 24133 2836 Locate
rpoB gene − 24160 27372 3213 Locate
trnC-GCA gene + 28535 28605 71 Locate
petN gene + 29316 29405 90 Locate
psbM gene − 30413 30526 114 Locate
trnD-GUC gene − 31054 31127 74 Locate
trnY-GUA gene − 31241 31324 84 Locate
trnE-UUC gene − 31384 31456 73 Locate
trnT-GGU gene + 32020 32091 72 Locate
psbD gene + 33408 34469 1062 Locate
psbC gene + 34417 35838 1422 Locate
trnS-UGA gene − 36083 36174 92 Locate
psbZ gene + 36494 36682 189 Locate
trnG-GCC gene + 36954 37024 71 Locate
trnfM-CAU gene − 37168 37241 74 Locate
rps14 gene − 37391 37693 303 Locate
psaB gene − 37821 40025 2205 Locate
psaA gene − 40051 42303 2253 Locate
ycf3 gene − 43001 44927 1927 Locate
trnS-GGA gene + 45812 45898 87 Locate
rps4 gene − 46182 46787 606 Locate
trnT-UGU gene − 47121 47193 73 Locate
trnL-UAA gene + 47868 48433 566 Locate
trnF-GAA gene + 48722 48794 73 Locate
ndhJ gene − 49438 49914 477 Locate
ndhK gene − 50022 50699 678 Locate
ndhC gene − 50752 51114 363 Locate
trnV-UAC gene − 51572 52225 654 Locate
trnM-CAU gene + 52411 52483 73 Locate
atpE gene − 52692 53093 402 Locate
atpB gene − 53090 54586 1497 Locate
rbcL gene + 55340 56800 1461 Locate
accD gene + 57517 58995 1479 Locate
psaI gene + 59706 59816 111 Locate
ycf4 gene + 60250 60804 555 Locate
cemA gene + 61545 62144 600 Locate
petA gene + 62351 63313 963 Locate
psbJ gene − 64337 64459 123 Locate
psbL gene − 64594 64815 222 Locate
psbF gene − 64734 64853 120 Locate
psbE gene − 64868 65119 252 Locate
petL gene + 66025 66120 96 Locate
petG gene + 66296 66409 114 Locate
trnW-CCA gene − 66519 66592 74 Locate
trnP-UGG gene − 66762 66835 74 Locate
psaJ gene + 67109 67243 135 Locate
rpl33 gene + 67722 67922 201 Locate
rps18 gene + 68119 68424 306 Locate
rpl20 gene − 68660 69046 387 Locate
rps12 gene − 69835 69960 126 Locate
clpP gene − 70101 72043 1943 Locate
psbB gene + 72513 74039 1527 Locate
psbT gene + 74240 74347 108 Locate
psbN gene − 74409 74540 132 Locate
psbH gene + 74644 74865 222 Locate
petB gene + 74991 76360 1370 Locate
petD gene + 76549 77761 1213 Locate
rpoA gene − 77924 78934 1011 Locate
rps11 gene − 79006 79422 417 Locate
rpl36 gene − 79523 79636 114 Locate
infA gene − 79732 79965 234 Locate
rps8 gene − 80083 80493 411 Locate
rpl14 gene − 80662 81030 369 Locate
rpl16 gene − 81142 82396 1255 Locate
rps3 gene − 82544 83206 663 Locate
rpl22 gene − 83233 83664 432 Locate
rps19 gene − 83724 84002 279 Locate
rpl2 gene − 84057 85539 1483 Locate
rpl23 gene − 85558 85839 282 Locate
trnI-CAU gene − 85999 86072 74 Locate
ycf2 gene + 86161 92970 6810 Locate
ycf15 gene + 93112 93309 198 Locate
trnL-CAA gene − 93570 93650 81 Locate
ndhB gene − 94184 96395 2212 Locate
rps7 gene − 96670 97137 468 Locate
rps12 gene − 97191 97981 791 Locate
trnV-GAC gene + 99552 99623 72 Locate
rrn16 gene + 99851 101341 1491 Locate
trnI-GAU gene + 101640 102664 1025 Locate
trnA-UGC gene + 102729 103611 883 Locate
rrn23 gene + 103781 106593 2813 Locate
rrn4.5 gene + 106692 106794 103 Locate
rrn5 gene + 107042 107162 121 Locate
trnR-ACG gene + 107397 107470 74 Locate
trnN-GUU gene − 108069 108140 72 Locate
ndhF gene − 109217 111448 2232 Locate
rpl32 gene + 111967 112143 177 Locate
trnL-UAG gene + 112580 112659 80 Locate
ccsA gene + 112766 113743 978 Locate
ndhD gene − 113973 115502 1530 Locate
psaC gene − 115602 115847 246 Locate
ndhE gene − 116086 116391 306 Locate
ndhG gene − 116613 117143 531 Locate
ndhI gene − 117504 118004 501 Locate
ndhA gene − 118085 120181 2097 Locate
ndhH gene − 120183 121394 1212 Locate
rps15 gene − 121453 121725 273 Locate
ycf1 gene − 122013 127436 5424 Locate
trnN-GUU gene + 127766 127837 72 Locate
trnR-ACG gene − 128436 128509 74 Locate
rrn5 gene − 128744 128864 121 Locate
rrn4.5 gene − 129112 129214 103 Locate
rrn23 gene − 129313 132125 2813 Locate
trnA-UGC gene − 132295 133177 883 Locate
trnI-GAU gene − 133242 134266 1025 Locate
ycf68 gene − 133818 134111 294 Locate
rrn16 gene − 134565 136055 1491 Locate
trnV-GAC gene − 136283 136354 72 Locate
rps12 gene + 137925 138715 791 Locate
rps7 gene + 138769 139236 468 Locate
ndhB gene + 139511 141722 2212 Locate
trnL-CAA gene + 142256 142336 81 Locate
ycf15 gene − 142597 142794 198 Locate
ycf2 gene − 142936 149745 6810 Locate
trnI-CAU gene + 149834 149907 74 Locate
rpl23 gene + 150067 150348 282 Locate
rpl2 gene + 150367 151849 1483 Locate
Status Available
Accession PQ058276.1
Length 151,944 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources