Scutellaria pycnoclada chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130060.1 · 4–77 bp · −
psbA · PZ130060.1 · 374–1,432 bp · −
trnK-UUU · PZ130060.1 · 1,674–4,255 bp · −
matK · PZ130060.1 · 1,964–3,490 bp · −
rps16 · PZ130060.1 · 5,157–6,317 bp · −
trnQ-UUG · PZ130060.1 · 7,063–7,134 bp · −
trnS-GCU · PZ130060.1 · 8,263–8,350 bp · −
atpA · PZ130060.1 · 10,152–11,675 bp · −
atpF · PZ130060.1 · 11,757–12,986 bp · −
atpH · PZ130060.1 · 13,347–13,592 bp · −
atpI · PZ130060.1 · 14,580–15,323 bp · −
rps2 · PZ130060.1 · 15,669–16,379 bp · −
rpoC2 · PZ130060.1 · 16,594–20,799 bp · −
rpoC1 · PZ130060.1 · 20,954–23,776 bp · −
rpoB · PZ130060.1 · 23,803–27,015 bp · −
psbM · PZ130060.1 · 30,055–30,159 bp · −
trnD-GUC · PZ130060.1 · 30,685–30,758 bp · −
trnY-GUA · PZ130060.1 · 30,872–30,955 bp · −
trnE-UUC · PZ130060.1 · 31,015–31,087 bp · −
trnS-UGA · PZ130060.1 · 35,706–35,797 bp · −
trnfM-CAU · PZ130060.1 · 36,799–36,872 bp · −
rps14 · PZ130060.1 · 37,022–37,324 bp · −
psaB · PZ130060.1 · 37,453–39,657 bp · −
psaA · PZ130060.1 · 39,683–41,935 bp · −
ycf3 · PZ130060.1 · 42,628–44,551 bp · −
rps4 · PZ130060.1 · 45,796–46,401 bp · −
trnT-UGU · PZ130060.1 · 46,741–46,813 bp · −
ndhJ · PZ130060.1 · 49,077–49,553 bp · −
ndhK · PZ130060.1 · 49,662–50,339 bp · −
ndhC · PZ130060.1 · 50,393–50,755 bp · −
trnV-UAC · PZ130060.1 · 51,741–52,393 bp · −
atpE · PZ130060.1 · 52,848–53,249 bp · −
atpB · PZ130060.1 · 53,246–54,742 bp · −
psbJ · PZ130060.1 · 64,478–64,600 bp · −
psbL · PZ130060.1 · 64,734–64,955 bp · −
psbF · PZ130060.1 · 64,874–64,993 bp · −
psbE · PZ130060.1 · 65,008–65,259 bp · −
trnW-CCA · PZ130060.1 · 66,639–66,712 bp · −
trnP-UGG · PZ130060.1 · 66,882–66,955 bp · −
rpl20 · PZ130060.1 · 68,751–69,137 bp · −
rps12 · PZ130060.1 · 69,933–70,046 bp · −
rps12 · PZ130060.1 · 97,195–97,985 bp · −
clpP · PZ130060.1 · 70,188–72,116 bp · −
psbN · PZ130060.1 · 74,454–74,585 bp · −
rpoA · PZ130060.1 · 78,149–78,949 bp · −
rps11 · PZ130060.1 · 79,021–79,437 bp · −
rpl36 · PZ130060.1 · 79,539–79,652 bp · −
infA · PZ130060.1 · 79,747–79,980 bp · −
rps8 · PZ130060.1 · 80,104–80,514 bp · −
rpl14 · PZ130060.1 · 80,667–81,035 bp · −
rpl16 · PZ130060.1 · 81,162–82,395 bp · −
rps3 · PZ130060.1 · 82,551–83,213 bp · −
rpl22 · PZ130060.1 · 83,215–83,670 bp · −
rps19 · PZ130060.1 · 83,730–84,008 bp · −
rpl2 · PZ130060.1 · 84,063–85,544 bp · −
rpl23 · PZ130060.1 · 85,563–85,844 bp · −
trnI-CAU · PZ130060.1 · 86,004–86,077 bp · −
trnL-CAA · PZ130060.1 · 93,565–93,645 bp · −
ndhB · PZ130060.1 · 94,188–96,345 bp · −
rps7 · PZ130060.1 · 96,674–97,141 bp · −
trnN-GUU · PZ130060.1 · 108,021–108,092 bp · −
ndhF · PZ130060.1 · 109,149–111,410 bp · −
ndhD · PZ130060.1 · 113,790–115,319 bp · −
psaC · PZ130060.1 · 115,420–115,665 bp · −
ndhE · PZ130060.1 · 115,921–116,226 bp · −
ndhG · PZ130060.1 · 116,443–116,973 bp · −
ndhI · PZ130060.1 · 117,340–117,840 bp · −
ndhA · PZ130060.1 · 117,926–120,047 bp · −
ndhH · PZ130060.1 · 120,049–121,260 bp · −
rps15 · PZ130060.1 · 121,327–121,599 bp · −
ycf1 · PZ130060.1 · 121,797–127,433 bp · −
trnR-ACG · PZ130060.1 · 128,272–128,345 bp · −
rrn5 · PZ130060.1 · 128,580–128,700 bp · −
rrn4.5 · PZ130060.1 · 128,948–129,050 bp · −
rrn23 · PZ130060.1 · 129,149–131,960 bp · −
trnA-UGC · PZ130060.1 · 132,130–133,015 bp · −
trnI-GAU · PZ130060.1 · 133,080–134,100 bp · −
ycf68 · PZ130060.1 · 133,652–133,945 bp · −
rrn16 · PZ130060.1 · 134,399–135,889 bp · −
trnV-GAC · PZ130060.1 · 136,116–136,187 bp · −
ycf15 · PZ130060.1 · 142,439–142,687 bp · −
ycf2 · PZ130060.1 · 142,778–149,578 bp · −
psbK · PZ130060.1 · 7,459–7,644 bp · +
psbI · PZ130060.1 · 8,034–8,144 bp · +
trnG-UCC · PZ130060.1 · 9,053–9,809 bp · +
trnR-UCU · PZ130060.1 · 9,984–10,055 bp · +
trnC-GCA · PZ130060.1 · 28,176–28,246 bp · +
petN · PZ130060.1 · 28,962–29,051 bp · +
trnT-GGU · PZ130060.1 · 31,663–31,734 bp · +
psbD · PZ130060.1 · 33,040–34,101 bp · +
psbC · PZ130060.1 · 34,049–35,470 bp · +
psbZ · PZ130060.1 · 36,113–36,301 bp · +
trnG-GCC · PZ130060.1 · 36,580–36,650 bp · +
trnS-GGA · PZ130060.1 · 45,434–45,520 bp · +
trnL-UAA · PZ130060.1 · 47,494–48,053 bp · +
trnF-GAA · PZ130060.1 · 48,356–48,428 bp · +
trnM-CAU · PZ130060.1 · 52,582–52,654 bp · +
rbcL · PZ130060.1 · 55,492–56,955 bp · +
accD · PZ130060.1 · 57,669–59,147 bp · +
psaI · PZ130060.1 · 59,854–59,964 bp · +
ycf4 · PZ130060.1 · 60,398–60,952 bp · +
cemA · PZ130060.1 · 61,701–62,300 bp · +
petA · PZ130060.1 · 62,507–63,469 bp · +
petL · PZ130060.1 · 66,136–66,231 bp · +
petG · PZ130060.1 · 66,407–66,520 bp · +
psaJ · PZ130060.1 · 67,227–67,361 bp · +
rpl33 · PZ130060.1 · 67,836–68,036 bp · +
rps18 · PZ130060.1 · 68,211–68,516 bp · +
rps12 · PZ130060.1 · 137,759–138,549 bp · +
psbB · PZ130060.1 · 72,568–74,094 bp · +
psbT · PZ130060.1 · 74,286–74,393 bp · +
psbH · PZ130060.1 · 74,689–74,910 bp · +
petB · PZ130060.1 · 75,035–76,405 bp · +
petD · PZ130060.1 · 76,588–77,794 bp · +
ycf2 · PZ130060.1 · 86,166–92,966 bp · +
ycf15 · PZ130060.1 · 93,057–93,305 bp · +
trnV-GAC · PZ130060.1 · 99,557–99,628 bp · +
rrn16 · PZ130060.1 · 99,855–101,345 bp · +
trnI-GAU · PZ130060.1 · 101,644–102,664 bp · +
trnA-UGC · PZ130060.1 · 102,729–103,614 bp · +
rrn23 · PZ130060.1 · 103,784–106,595 bp · +
rrn4.5 · PZ130060.1 · 106,694–106,796 bp · +
rrn5 · PZ130060.1 · 107,044–107,164 bp · +
trnR-ACG · PZ130060.1 · 107,399–107,472 bp · +
rpl32 · PZ130060.1 · 111,738–111,914 bp · +
trnL-UAG · PZ130060.1 · 112,361–112,440 bp · +
ccsA · PZ130060.1 · 112,542–113,516 bp · +
trnN-GUU · PZ130060.1 · 127,652–127,723 bp · +
rps7 · PZ130060.1 · 138,603–139,070 bp · +
ndhB · PZ130060.1 · 139,399–141,556 bp · +
trnL-CAA · PZ130060.1 · 142,099–142,179 bp · +
trnI-CAU · PZ130060.1 · 149,667–149,740 bp · +
rpl23 · PZ130060.1 · 149,900–150,181 bp · +
rpl2 · PZ130060.1 · 150,200–151,681 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pycnoclada
ANNOTATED PLASTOME
PZ130060.1
151,781 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37945 75890 113836 151781 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7063 7134 72 Locate
psbK gene + 7459 7644 186 Locate
psbI gene + 8034 8144 111 Locate
trnS-GCU gene − 8263 8350 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12986 1230 Locate
atpH gene − 13347 13592 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15669 16379 711 Locate
rpoC2 gene − 16594 20799 4206 Locate
rpoC1 gene − 20954 23776 2823 Locate
rpoB gene − 23803 27015 3213 Locate
trnC-GCA gene + 28176 28246 71 Locate
petN gene + 28962 29051 90 Locate
psbM gene − 30055 30159 105 Locate
trnD-GUC gene − 30685 30758 74 Locate
trnY-GUA gene − 30872 30955 84 Locate
trnE-UUC gene − 31015 31087 73 Locate
trnT-GGU gene + 31663 31734 72 Locate
psbD gene + 33040 34101 1062 Locate
psbC gene + 34049 35470 1422 Locate
trnS-UGA gene − 35706 35797 92 Locate
psbZ gene + 36113 36301 189 Locate
trnG-GCC gene + 36580 36650 71 Locate
trnfM-CAU gene − 36799 36872 74 Locate
rps14 gene − 37022 37324 303 Locate
psaB gene − 37453 39657 2205 Locate
psaA gene − 39683 41935 2253 Locate
ycf3 gene − 42628 44551 1924 Locate
trnS-GGA gene + 45434 45520 87 Locate
rps4 gene − 45796 46401 606 Locate
trnT-UGU gene − 46741 46813 73 Locate
trnL-UAA gene + 47494 48053 560 Locate
trnF-GAA gene + 48356 48428 73 Locate
ndhJ gene − 49077 49553 477 Locate
ndhK gene − 49662 50339 678 Locate
ndhC gene − 50393 50755 363 Locate
trnV-UAC gene − 51741 52393 653 Locate
trnM-CAU gene + 52582 52654 73 Locate
atpE gene − 52848 53249 402 Locate
atpB gene − 53246 54742 1497 Locate
rbcL gene + 55492 56955 1464 Locate
accD gene + 57669 59147 1479 Locate
psaI gene + 59854 59964 111 Locate
ycf4 gene + 60398 60952 555 Locate
cemA gene + 61701 62300 600 Locate
petA gene + 62507 63469 963 Locate
psbJ gene − 64478 64600 123 Locate
psbL gene − 64734 64955 222 Locate
psbF gene − 64874 64993 120 Locate
psbE gene − 65008 65259 252 Locate
petL gene + 66136 66231 96 Locate
petG gene + 66407 66520 114 Locate
trnW-CCA gene − 66639 66712 74 Locate
trnP-UGG gene − 66882 66955 74 Locate
psaJ gene + 67227 67361 135 Locate
rpl33 gene + 67836 68036 201 Locate
rps18 gene + 68211 68516 306 Locate
rpl20 gene − 68751 69137 387 Locate
rps12 gene − 69933 70046 114 Locate
clpP gene − 70188 72116 1929 Locate
psbB gene + 72568 74094 1527 Locate
psbT gene + 74286 74393 108 Locate
psbN gene − 74454 74585 132 Locate
psbH gene + 74689 74910 222 Locate
petB gene + 75035 76405 1371 Locate
petD gene + 76588 77794 1207 Locate
rpoA gene − 78149 78949 801 Locate
rps11 gene − 79021 79437 417 Locate
rpl36 gene − 79539 79652 114 Locate
infA gene − 79747 79980 234 Locate
rps8 gene − 80104 80514 411 Locate
rpl14 gene − 80667 81035 369 Locate
rpl16 gene − 81162 82395 1234 Locate
rps3 gene − 82551 83213 663 Locate
rpl22 gene − 83215 83670 456 Locate
rps19 gene − 83730 84008 279 Locate
rpl2 gene − 84063 85544 1482 Locate
rpl23 gene − 85563 85844 282 Locate
trnI-CAU gene − 86004 86077 74 Locate
ycf2 gene + 86166 92966 6801 Locate
ycf15 gene + 93057 93305 249 Locate
trnL-CAA gene − 93565 93645 81 Locate
ndhB gene − 94188 96345 2158 Locate
rps7 gene − 96674 97141 468 Locate
rps12 gene − 97195 97985 791 Locate
trnV-GAC gene + 99557 99628 72 Locate
rrn16 gene + 99855 101345 1491 Locate
trnI-GAU gene + 101644 102664 1021 Locate
trnA-UGC gene + 102729 103614 886 Locate
rrn23 gene + 103784 106595 2812 Locate
rrn4.5 gene + 106694 106796 103 Locate
rrn5 gene + 107044 107164 121 Locate
trnR-ACG gene + 107399 107472 74 Locate
trnN-GUU gene − 108021 108092 72 Locate
ndhF gene − 109149 111410 2262 Locate
rpl32 gene + 111738 111914 177 Locate
trnL-UAG gene + 112361 112440 80 Locate
ccsA gene + 112542 113516 975 Locate
ndhD gene − 113790 115319 1530 Locate
psaC gene − 115420 115665 246 Locate
ndhE gene − 115921 116226 306 Locate
ndhG gene − 116443 116973 531 Locate
ndhI gene − 117340 117840 501 Locate
ndhA gene − 117926 120047 2122 Locate
ndhH gene − 120049 121260 1212 Locate
rps15 gene − 121327 121599 273 Locate
ycf1 gene − 121797 127433 5637 Locate
trnN-GUU gene + 127652 127723 72 Locate
trnR-ACG gene − 128272 128345 74 Locate
rrn5 gene − 128580 128700 121 Locate
rrn4.5 gene − 128948 129050 103 Locate
rrn23 gene − 129149 131960 2812 Locate
trnA-UGC gene − 132130 133015 886 Locate
trnI-GAU gene − 133080 134100 1021 Locate
ycf68 gene − 133652 133945 294 Locate
rrn16 gene − 134399 135889 1491 Locate
trnV-GAC gene − 136116 136187 72 Locate
rps12 gene + 137759 138549 791 Locate
rps7 gene + 138603 139070 468 Locate
ndhB gene + 139399 141556 2158 Locate
trnL-CAA gene + 142099 142179 81 Locate
ycf15 gene − 142439 142687 249 Locate
ycf2 gene − 142778 149578 6801 Locate
trnI-CAU gene + 149667 149740 74 Locate
rpl23 gene + 149900 150181 282 Locate
rpl2 gene + 150200 151681 1482 Locate
Status Available
Accession PZ130060.1
Length 151,781 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources