Scutellaria quadrilobulata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059301.1 · 3–76 bp · −
psbA · PQ059301.1 · 369–1,427 bp · −
trnK-UUU · PQ059301.1 · 1,669–4,257 bp · −
matK · PQ059301.1 · 1,964–3,499 bp · −
rps16 · PQ059301.1 · 5,135–6,298 bp · −
trnQ-UUG · PQ059301.1 · 7,310–7,381 bp · −
trnS-GCU · PQ059301.1 · 8,508–8,595 bp · −
atpA · PQ059301.1 · 10,368–11,891 bp · −
atpF · PQ059301.1 · 11,974–13,201 bp · −
atpH · PQ059301.1 · 13,567–13,812 bp · −
atpI · PQ059301.1 · 14,808–15,551 bp · −
rps2 · PQ059301.1 · 15,901–16,611 bp · −
rpoC2 · PQ059301.1 · 16,828–21,033 bp · −
rpoC1 · PQ059301.1 · 21,188–24,019 bp · −
rpoB · PQ059301.1 · 24,046–27,258 bp · −
psbM · PQ059301.1 · 30,345–30,449 bp · −
trnD-GUC · PQ059301.1 · 30,976–31,049 bp · −
trnY-GUA · PQ059301.1 · 31,163–31,246 bp · −
trnE-UUC · PQ059301.1 · 31,306–31,378 bp · −
trnS-UGA · PQ059301.1 · 36,003–36,094 bp · −
trnfM-CAU · PQ059301.1 · 37,088–37,161 bp · −
rps14 · PQ059301.1 · 37,311–37,613 bp · −
psaB · PQ059301.1 · 37,741–39,945 bp · −
psaA · PQ059301.1 · 39,971–42,223 bp · −
ycf3 · PQ059301.1 · 42,890–44,812 bp · −
rps4 · PQ059301.1 · 46,069–46,674 bp · −
trnT-UGU · PQ059301.1 · 47,015–47,087 bp · −
ndhJ · PQ059301.1 · 49,360–49,836 bp · −
ndhK · PQ059301.1 · 49,944–50,705 bp · −
ndhC · PQ059301.1 · 50,675–51,037 bp · −
trnV-UAC · PQ059301.1 · 51,893–52,545 bp · −
atpE · PQ059301.1 · 53,014–53,415 bp · −
atpB · PQ059301.1 · 53,412–54,899 bp · −
psbJ · PQ059301.1 · 64,503–64,625 bp · −
psbL · PQ059301.1 · 64,759–64,875 bp · −
psbF · PQ059301.1 · 64,899–65,018 bp · −
psbE · PQ059301.1 · 65,033–65,284 bp · −
trnW-CCA · PQ059301.1 · 66,702–66,775 bp · −
trnP-UGG · PQ059301.1 · 66,945–67,018 bp · −
rpl20 · PQ059301.1 · 68,827–69,213 bp · −
rps12 · PQ059301.1 · 69,996–70,121 bp · −
rps12 · PQ059301.1 · 97,307–98,097 bp · −
clpP · PQ059301.1 · 70,264–72,196 bp · −
psbN · PQ059301.1 · 74,534–74,665 bp · −
rpoA · PQ059301.1 · 78,035–79,048 bp · −
rps11 · PQ059301.1 · 79,120–79,536 bp · −
rpl36 · PQ059301.1 · 79,638–79,751 bp · −
infA · PQ059301.1 · 79,847–80,080 bp · −
rps8 · PQ059301.1 · 80,200–80,610 bp · −
rpl14 · PQ059301.1 · 80,781–81,149 bp · −
rpl16 · PQ059301.1 · 81,276–82,502 bp · −
rps3 · PQ059301.1 · 82,657–83,319 bp · −
rpl22 · PQ059301.1 · 83,321–83,776 bp · −
rps19 · PQ059301.1 · 83,836–84,114 bp · −
rpl2 · PQ059301.1 · 84,169–85,651 bp · −
rpl23 · PQ059301.1 · 85,670–85,951 bp · −
trnI-CAU · PQ059301.1 · 86,111–86,184 bp · −
trnL-CAA · PQ059301.1 · 93,677–93,757 bp · −
ndhB · PQ059301.1 · 94,300–96,511 bp · −
rps7 · PQ059301.1 · 96,786–97,253 bp · −
trnN-GUU · PQ059301.1 · 108,132–108,203 bp · −
ndhF · PQ059301.1 · 109,280–111,520 bp · −
ndhD · PQ059301.1 · 114,045–115,568 bp · −
psaC · PQ059301.1 · 115,667–115,912 bp · −
ndhE · PQ059301.1 · 116,169–116,474 bp · −
ndhG · PQ059301.1 · 116,695–117,225 bp · −
ndhI · PQ059301.1 · 117,590–118,090 bp · −
ndhA · PQ059301.1 · 118,171–120,262 bp · −
ndhH · PQ059301.1 · 120,264–121,475 bp · −
rps15 · PQ059301.1 · 121,548–121,880 bp · −
ycf1 · PQ059301.1 · 122,087–127,732 bp · −
trnR-ACG · PQ059301.1 · 128,569–128,642 bp · −
rrn5 · PQ059301.1 · 128,877–128,997 bp · −
rrn4.5 · PQ059301.1 · 129,245–129,347 bp · −
rrn23 · PQ059301.1 · 129,446–132,258 bp · −
trnA-UGC · PQ059301.1 · 132,428–133,306 bp · −
trnI-GAU · PQ059301.1 · 133,371–134,391 bp · −
ycf68 · PQ059301.1 · 133,997–134,236 bp · −
rrn16 · PQ059301.1 · 134,690–136,180 bp · −
trnV-GAC · PQ059301.1 · 136,408–136,479 bp · −
ycf15 · PQ059301.1 · 142,733–142,930 bp · −
ycf2 · PQ059301.1 · 143,072–149,881 bp · −
psbK · PQ059301.1 · 7,706–7,891 bp · +
psbI · PQ059301.1 · 8,288–8,398 bp · +
trnG-UCC · PQ059301.1 · 9,269–10,029 bp · +
trnR-UCU · PQ059301.1 · 10,200–10,271 bp · +
trnC-GCA · PQ059301.1 · 28,429–28,499 bp · +
petN · PQ059301.1 · 29,211–29,300 bp · +
trnT-GGU · PQ059301.1 · 31,961–32,032 bp · +
psbD · PQ059301.1 · 33,337–34,398 bp · +
psbC · PQ059301.1 · 34,346–35,767 bp · +
psbZ · PQ059301.1 · 36,414–36,602 bp · +
trnG-GCC · PQ059301.1 · 36,874–36,944 bp · +
trnS-GGA · PQ059301.1 · 45,697–45,783 bp · +
trnL-UAA · PQ059301.1 · 47,772–48,332 bp · +
trnF-GAA · PQ059301.1 · 48,639–48,711 bp · +
trnM-CAU · PQ059301.1 · 52,726–52,798 bp · +
rbcL · PQ059301.1 · 55,651–57,114 bp · +
accD · PQ059301.1 · 57,841–59,307 bp · +
psaI · PQ059301.1 · 59,865–59,975 bp · +
ycf4 · PQ059301.1 · 60,409–60,963 bp · +
cemA · PQ059301.1 · 61,701–62,300 bp · +
petA · PQ059301.1 · 62,507–63,469 bp · +
petL · PQ059301.1 · 66,199–66,294 bp · +
petG · PQ059301.1 · 66,470–66,583 bp · +
psaJ · PQ059301.1 · 67,302–67,436 bp · +
rpl33 · PQ059301.1 · 67,910–68,110 bp · +
rps18 · PQ059301.1 · 68,285–68,590 bp · +
rps12 · PQ059301.1 · 138,057–138,847 bp · +
psbB · PQ059301.1 · 72,641–74,167 bp · +
psbT · PQ059301.1 · 74,359–74,460 bp · +
psbH · PQ059301.1 · 74,769–74,990 bp · +
petB · PQ059301.1 · 75,115–76,482 bp · +
petD · PQ059301.1 · 76,671–77,872 bp · +
ycf2 · PQ059301.1 · 86,273–93,082 bp · +
ycf15 · PQ059301.1 · 93,224–93,421 bp · +
trnV-GAC · PQ059301.1 · 99,675–99,746 bp · +
rrn16 · PQ059301.1 · 99,974–101,464 bp · +
trnI-GAU · PQ059301.1 · 101,763–102,783 bp · +
trnA-UGC · PQ059301.1 · 102,848–103,726 bp · +
rrn23 · PQ059301.1 · 103,896–106,708 bp · +
rrn4.5 · PQ059301.1 · 106,807–106,909 bp · +
rrn5 · PQ059301.1 · 107,157–107,277 bp · +
trnR-ACG · PQ059301.1 · 107,512–107,585 bp · +
rpl32 · PQ059301.1 · 112,041–112,217 bp · +
trnL-UAG · PQ059301.1 · 112,662–112,741 bp · +
ccsA · PQ059301.1 · 112,838–113,812 bp · +
trnN-GUU · PQ059301.1 · 127,951–128,022 bp · +
rps7 · PQ059301.1 · 138,901–139,368 bp · +
ndhB · PQ059301.1 · 139,643–141,854 bp · +
trnL-CAA · PQ059301.1 · 142,397–142,477 bp · +
trnI-CAU · PQ059301.1 · 149,970–150,043 bp · +
rpl23 · PQ059301.1 · 150,203–150,484 bp · +
rpl2 · PQ059301.1 · 150,503–151,985 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria quadrilobulata
ANNOTATED PLASTOME
PQ059301.1
152,080 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38020 76040 114060 152080 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1669 4257 2589 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5135 6298 1164 Locate
trnQ-UUG gene − 7310 7381 72 Locate
psbK gene + 7706 7891 186 Locate
psbI gene + 8288 8398 111 Locate
trnS-GCU gene − 8508 8595 88 Locate
trnG-UCC gene + 9269 10029 761 Locate
trnR-UCU gene + 10200 10271 72 Locate
atpA gene − 10368 11891 1524 Locate
atpF gene − 11974 13201 1228 Locate
atpH gene − 13567 13812 246 Locate
atpI gene − 14808 15551 744 Locate
rps2 gene − 15901 16611 711 Locate
rpoC2 gene − 16828 21033 4206 Locate
rpoC1 gene − 21188 24019 2832 Locate
rpoB gene − 24046 27258 3213 Locate
trnC-GCA gene + 28429 28499 71 Locate
petN gene + 29211 29300 90 Locate
psbM gene − 30345 30449 105 Locate
trnD-GUC gene − 30976 31049 74 Locate
trnY-GUA gene − 31163 31246 84 Locate
trnE-UUC gene − 31306 31378 73 Locate
trnT-GGU gene + 31961 32032 72 Locate
psbD gene + 33337 34398 1062 Locate
psbC gene + 34346 35767 1422 Locate
trnS-UGA gene − 36003 36094 92 Locate
psbZ gene + 36414 36602 189 Locate
trnG-GCC gene + 36874 36944 71 Locate
trnfM-CAU gene − 37088 37161 74 Locate
rps14 gene − 37311 37613 303 Locate
psaB gene − 37741 39945 2205 Locate
psaA gene − 39971 42223 2253 Locate
ycf3 gene − 42890 44812 1923 Locate
trnS-GGA gene + 45697 45783 87 Locate
rps4 gene − 46069 46674 606 Locate
trnT-UGU gene − 47015 47087 73 Locate
trnL-UAA gene + 47772 48332 561 Locate
trnF-GAA gene + 48639 48711 73 Locate
ndhJ gene − 49360 49836 477 Locate
ndhK gene − 49944 50705 762 Locate
ndhC gene − 50675 51037 363 Locate
trnV-UAC gene − 51893 52545 653 Locate
trnM-CAU gene + 52726 52798 73 Locate
atpE gene − 53014 53415 402 Locate
atpB gene − 53412 54899 1488 Locate
rbcL gene + 55651 57114 1464 Locate
accD gene + 57841 59307 1467 Locate
psaI gene + 59865 59975 111 Locate
ycf4 gene + 60409 60963 555 Locate
cemA gene + 61701 62300 600 Locate
petA gene + 62507 63469 963 Locate
psbJ gene − 64503 64625 123 Locate
psbL gene − 64759 64875 117 Locate
psbF gene − 64899 65018 120 Locate
psbE gene − 65033 65284 252 Locate
petL gene + 66199 66294 96 Locate
petG gene + 66470 66583 114 Locate
trnW-CCA gene − 66702 66775 74 Locate
trnP-UGG gene − 66945 67018 74 Locate
psaJ gene + 67302 67436 135 Locate
rpl33 gene + 67910 68110 201 Locate
rps18 gene + 68285 68590 306 Locate
rpl20 gene − 68827 69213 387 Locate
rps12 gene − 69996 70121 126 Locate
clpP gene − 70264 72196 1933 Locate
psbB gene + 72641 74167 1527 Locate
psbT gene + 74359 74460 102 Locate
psbN gene − 74534 74665 132 Locate
psbH gene + 74769 74990 222 Locate
petB gene + 75115 76482 1368 Locate
petD gene + 76671 77872 1202 Locate
rpoA gene − 78035 79048 1014 Locate
rps11 gene − 79120 79536 417 Locate
rpl36 gene − 79638 79751 114 Locate
infA gene − 79847 80080 234 Locate
rps8 gene − 80200 80610 411 Locate
rpl14 gene − 80781 81149 369 Locate
rpl16 gene − 81276 82502 1227 Locate
rps3 gene − 82657 83319 663 Locate
rpl22 gene − 83321 83776 456 Locate
rps19 gene − 83836 84114 279 Locate
rpl2 gene − 84169 85651 1483 Locate
rpl23 gene − 85670 85951 282 Locate
trnI-CAU gene − 86111 86184 74 Locate
ycf2 gene + 86273 93082 6810 Locate
ycf15 gene + 93224 93421 198 Locate
trnL-CAA gene − 93677 93757 81 Locate
ndhB gene − 94300 96511 2212 Locate
rps7 gene − 96786 97253 468 Locate
rps12 gene − 97307 98097 791 Locate
trnV-GAC gene + 99675 99746 72 Locate
rrn16 gene + 99974 101464 1491 Locate
trnI-GAU gene + 101763 102783 1021 Locate
trnA-UGC gene + 102848 103726 879 Locate
rrn23 gene + 103896 106708 2813 Locate
rrn4.5 gene + 106807 106909 103 Locate
rrn5 gene + 107157 107277 121 Locate
trnR-ACG gene + 107512 107585 74 Locate
trnN-GUU gene − 108132 108203 72 Locate
ndhF gene − 109280 111520 2241 Locate
rpl32 gene + 112041 112217 177 Locate
trnL-UAG gene + 112662 112741 80 Locate
ccsA gene + 112838 113812 975 Locate
ndhD gene − 114045 115568 1524 Locate
psaC gene − 115667 115912 246 Locate
ndhE gene − 116169 116474 306 Locate
ndhG gene − 116695 117225 531 Locate
ndhI gene − 117590 118090 501 Locate
ndhA gene − 118171 120262 2092 Locate
ndhH gene − 120264 121475 1212 Locate
rps15 gene − 121548 121880 333 Locate
ycf1 gene − 122087 127732 5646 Locate
trnN-GUU gene + 127951 128022 72 Locate
trnR-ACG gene − 128569 128642 74 Locate
rrn5 gene − 128877 128997 121 Locate
rrn4.5 gene − 129245 129347 103 Locate
rrn23 gene − 129446 132258 2813 Locate
trnA-UGC gene − 132428 133306 879 Locate
trnI-GAU gene − 133371 134391 1021 Locate
ycf68 gene − 133997 134236 240 Locate
rrn16 gene − 134690 136180 1491 Locate
trnV-GAC gene − 136408 136479 72 Locate
rps12 gene + 138057 138847 791 Locate
rps7 gene + 138901 139368 468 Locate
ndhB gene + 139643 141854 2212 Locate
trnL-CAA gene + 142397 142477 81 Locate
ycf15 gene − 142733 142930 198 Locate
ycf2 gene − 143072 149881 6810 Locate
trnI-CAU gene + 149970 150043 74 Locate
rpl23 gene + 150203 150484 282 Locate
rpl2 gene + 150503 151985 1483 Locate
Status Available
Accession PQ059301.1
Length 152,080 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources