Scutellaria racemosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059336.1 · 2–75 bp · −
psbA · PQ059336.1 · 380–1,438 bp · −
trnK-UUU · PQ059336.1 · 1,671–4,258 bp · −
matK · PQ059336.1 · 1,966–3,501 bp · −
rps16 · PQ059336.1 · 5,181–6,349 bp · −
trnQ-UUG · PQ059336.1 · 7,466–7,537 bp · −
trnS-GCU · PQ059336.1 · 8,675–8,762 bp · −
atpA · PQ059336.1 · 10,562–12,085 bp · −
atpF · PQ059336.1 · 12,168–13,397 bp · −
atpH · PQ059336.1 · 13,754–13,999 bp · −
atpI · PQ059336.1 · 14,961–15,704 bp · −
rps2 · PQ059336.1 · 16,052–16,888 bp · −
rpoC2 · PQ059336.1 · 16,959–21,179 bp · −
rpoC1 · PQ059336.1 · 21,334–24,167 bp · −
rpoB · PQ059336.1 · 24,194–27,406 bp · −
psbM · PQ059336.1 · 30,451–30,555 bp · −
trnD-GUC · PQ059336.1 · 31,083–31,156 bp · −
trnY-GUA · PQ059336.1 · 31,270–31,353 bp · −
trnE-UUC · PQ059336.1 · 31,413–31,485 bp · −
trnS-UGA · PQ059336.1 · 36,134–36,225 bp · −
trnfM-CAU · PQ059336.1 · 37,237–37,310 bp · −
rps14 · PQ059336.1 · 37,460–37,762 bp · −
psaB · PQ059336.1 · 37,890–40,094 bp · −
psaA · PQ059336.1 · 40,120–42,372 bp · −
ycf3 · PQ059336.1 · 43,063–44,991 bp · −
rps4 · PQ059336.1 · 46,235–46,840 bp · −
trnT-UGU · PQ059336.1 · 47,175–47,247 bp · −
ndhJ · PQ059336.1 · 49,537–50,013 bp · −
ndhK · PQ059336.1 · 50,121–50,798 bp · −
ndhC · PQ059336.1 · 50,851–51,213 bp · −
trnV-UAC · PQ059336.1 · 52,211–52,863 bp · −
atpE · PQ059336.1 · 53,333–53,734 bp · −
atpB · PQ059336.1 · 53,731–55,218 bp · −
psbJ · PQ059336.1 · 64,972–65,094 bp · −
psbL · PQ059336.1 · 65,228–65,449 bp · −
psbF · PQ059336.1 · 65,368–65,487 bp · −
psbE · PQ059336.1 · 65,502–65,753 bp · −
trnW-CCA · PQ059336.1 · 67,165–67,238 bp · −
trnP-UGG · PQ059336.1 · 67,408–67,481 bp · −
rpl20 · PQ059336.1 · 69,267–69,653 bp · −
rps12 · PQ059336.1 · 70,451–70,564 bp · −
rps12 · PQ059336.1 · 97,782–98,572 bp · −
clpP · PQ059336.1 · 70,708–72,647 bp · −
psbN · PQ059336.1 · 75,020–75,151 bp · −
rpoA · PQ059336.1 · 78,509–79,522 bp · −
rps11 · PQ059336.1 · 79,594–80,010 bp · −
rpl36 · PQ059336.1 · 80,112–80,225 bp · −
infA · PQ059336.1 · 80,321–80,554 bp · −
rps8 · PQ059336.1 · 80,673–81,083 bp · −
rpl14 · PQ059336.1 · 81,249–81,617 bp · −
rpl16 · PQ059336.1 · 81,745–82,977 bp · −
rps3 · PQ059336.1 · 83,132–83,794 bp · −
rpl22 · PQ059336.1 · 83,796–84,251 bp · −
rps19 · PQ059336.1 · 84,311–84,589 bp · −
rpl2 · PQ059336.1 · 84,644–86,126 bp · −
rpl23 · PQ059336.1 · 86,145–86,426 bp · −
trnI-CAU · PQ059336.1 · 86,586–86,659 bp · −
trnL-CAA · PQ059336.1 · 94,152–94,232 bp · −
ndhB · PQ059336.1 · 94,775–96,986 bp · −
rps7 · PQ059336.1 · 97,261–97,728 bp · −
trnN-GUU · PQ059336.1 · 108,611–108,682 bp · −
ndhF · PQ059336.1 · 109,759–111,999 bp · −
ndhD · PQ059336.1 · 114,519–116,042 bp · −
psaC · PQ059336.1 · 116,141–116,386 bp · −
ndhE · PQ059336.1 · 116,648–116,953 bp · −
ndhG · PQ059336.1 · 117,174–117,704 bp · −
ndhI · PQ059336.1 · 118,069–118,569 bp · −
ndhA · PQ059336.1 · 118,651–120,751 bp · −
ndhH · PQ059336.1 · 120,753–121,934 bp · −
rps15 · PQ059336.1 · 122,037–122,309 bp · −
ycf1 · PQ059336.1 · 122,582–128,233 bp · −
trnR-ACG · PQ059336.1 · 129,077–129,150 bp · −
rrn5 · PQ059336.1 · 129,385–129,505 bp · −
rrn4.5 · PQ059336.1 · 129,753–129,855 bp · −
rrn23 · PQ059336.1 · 129,954–132,766 bp · −
trnA-UGC · PQ059336.1 · 132,936–133,822 bp · −
trnI-GAU · PQ059336.1 · 133,887–134,907 bp · −
ycf68 · PQ059336.1 · 134,513–134,752 bp · −
rrn16 · PQ059336.1 · 135,206–136,696 bp · −
trnV-GAC · PQ059336.1 · 136,924–136,995 bp · −
ycf15 · PQ059336.1 · 143,238–143,486 bp · −
ycf2 · PQ059336.1 · 143,577–150,386 bp · −
psbK · PQ059336.1 · 7,862–8,047 bp · +
psbI · PQ059336.1 · 8,445–8,555 bp · +
trnG-UCC · PQ059336.1 · 9,457–10,219 bp · +
trnR-UCU · PQ059336.1 · 10,394–10,465 bp · +
trnC-GCA · PQ059336.1 · 28,580–28,650 bp · +
petN · PQ059336.1 · 29,361–29,450 bp · +
trnT-GGU · PQ059336.1 · 32,074–32,145 bp · +
psbD · PQ059336.1 · 33,460–34,521 bp · +
psbC · PQ059336.1 · 34,469–35,890 bp · +
psbZ · PQ059336.1 · 36,546–36,734 bp · +
trnG-GCC · PQ059336.1 · 37,011–37,081 bp · +
trnS-GGA · PQ059336.1 · 45,878–45,964 bp · +
trnL-UAA · PQ059336.1 · 47,933–48,493 bp · +
trnF-GAA · PQ059336.1 · 48,806–48,878 bp · +
trnM-CAU · PQ059336.1 · 53,045–53,117 bp · +
rbcL · PQ059336.1 · 55,968–57,431 bp · +
accD · PQ059336.1 · 58,149–59,615 bp · +
psaI · PQ059336.1 · 60,348–60,458 bp · +
ycf4 · PQ059336.1 · 60,892–61,446 bp · +
cemA · PQ059336.1 · 62,188–62,787 bp · +
petA · PQ059336.1 · 62,994–63,956 bp · +
petL · PQ059336.1 · 66,662–66,757 bp · +
petG · PQ059336.1 · 66,933–67,046 bp · +
psaJ · PQ059336.1 · 67,755–67,889 bp · +
rpl33 · PQ059336.1 · 68,352–68,552 bp · +
rps18 · PQ059336.1 · 68,727–69,032 bp · +
rps12 · PQ059336.1 · 138,562–139,352 bp · +
psbB · PQ059336.1 · 73,126–74,652 bp · +
psbT · PQ059336.1 · 74,844–74,945 bp · +
psbH · PQ059336.1 · 75,255–75,476 bp · +
petB · PQ059336.1 · 75,601–76,968 bp · +
petD · PQ059336.1 · 77,153–78,339 bp · +
ycf2 · PQ059336.1 · 86,748–93,557 bp · +
ycf15 · PQ059336.1 · 93,648–93,896 bp · +
trnV-GAC · PQ059336.1 · 100,139–100,210 bp · +
rrn16 · PQ059336.1 · 100,438–101,928 bp · +
trnI-GAU · PQ059336.1 · 102,227–103,247 bp · +
trnA-UGC · PQ059336.1 · 103,312–104,198 bp · +
rrn23 · PQ059336.1 · 104,368–107,180 bp · +
rrn4.5 · PQ059336.1 · 107,279–107,381 bp · +
rrn5 · PQ059336.1 · 107,629–107,749 bp · +
trnR-ACG · PQ059336.1 · 107,984–108,057 bp · +
rpl32 · PQ059336.1 · 112,523–112,699 bp · +
trnL-UAG · PQ059336.1 · 113,133–113,212 bp · +
ccsA · PQ059336.1 · 113,308–114,282 bp · +
trnN-GUU · PQ059336.1 · 128,452–128,523 bp · +
rps7 · PQ059336.1 · 139,406–139,873 bp · +
ndhB · PQ059336.1 · 140,148–142,359 bp · +
trnL-CAA · PQ059336.1 · 142,902–142,982 bp · +
trnI-CAU · PQ059336.1 · 150,475–150,548 bp · +
rpl23 · PQ059336.1 · 150,708–150,989 bp · +
rpl2 · PQ059336.1 · 151,008–152,490 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria racemosa
ANNOTATED PLASTOME
PQ059336.1
152,586 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38146 76293 114440 152586 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5181 6349 1169 Locate
trnQ-UUG gene − 7466 7537 72 Locate
psbK gene + 7862 8047 186 Locate
psbI gene + 8445 8555 111 Locate
trnS-GCU gene − 8675 8762 88 Locate
trnG-UCC gene + 9457 10219 763 Locate
trnR-UCU gene + 10394 10465 72 Locate
atpA gene − 10562 12085 1524 Locate
atpF gene − 12168 13397 1230 Locate
atpH gene − 13754 13999 246 Locate
atpI gene − 14961 15704 744 Locate
rps2 gene − 16052 16888 837 Locate
rpoC2 gene − 16959 21179 4221 Locate
rpoC1 gene − 21334 24167 2834 Locate
rpoB gene − 24194 27406 3213 Locate
trnC-GCA gene + 28580 28650 71 Locate
petN gene + 29361 29450 90 Locate
psbM gene − 30451 30555 105 Locate
trnD-GUC gene − 31083 31156 74 Locate
trnY-GUA gene − 31270 31353 84 Locate
trnE-UUC gene − 31413 31485 73 Locate
trnT-GGU gene + 32074 32145 72 Locate
psbD gene + 33460 34521 1062 Locate
psbC gene + 34469 35890 1422 Locate
trnS-UGA gene − 36134 36225 92 Locate
psbZ gene + 36546 36734 189 Locate
trnG-GCC gene + 37011 37081 71 Locate
trnfM-CAU gene − 37237 37310 74 Locate
rps14 gene − 37460 37762 303 Locate
psaB gene − 37890 40094 2205 Locate
psaA gene − 40120 42372 2253 Locate
ycf3 gene − 43063 44991 1929 Locate
trnS-GGA gene + 45878 45964 87 Locate
rps4 gene − 46235 46840 606 Locate
trnT-UGU gene − 47175 47247 73 Locate
trnL-UAA gene + 47933 48493 561 Locate
trnF-GAA gene + 48806 48878 73 Locate
ndhJ gene − 49537 50013 477 Locate
ndhK gene − 50121 50798 678 Locate
ndhC gene − 50851 51213 363 Locate
trnV-UAC gene − 52211 52863 653 Locate
trnM-CAU gene + 53045 53117 73 Locate
atpE gene − 53333 53734 402 Locate
atpB gene − 53731 55218 1488 Locate
rbcL gene + 55968 57431 1464 Locate
accD gene + 58149 59615 1467 Locate
psaI gene + 60348 60458 111 Locate
ycf4 gene + 60892 61446 555 Locate
cemA gene + 62188 62787 600 Locate
petA gene + 62994 63956 963 Locate
psbJ gene − 64972 65094 123 Locate
psbL gene − 65228 65449 222 Locate
psbF gene − 65368 65487 120 Locate
psbE gene − 65502 65753 252 Locate
petL gene + 66662 66757 96 Locate
petG gene + 66933 67046 114 Locate
trnW-CCA gene − 67165 67238 74 Locate
trnP-UGG gene − 67408 67481 74 Locate
psaJ gene + 67755 67889 135 Locate
rpl33 gene + 68352 68552 201 Locate
rps18 gene + 68727 69032 306 Locate
rpl20 gene − 69267 69653 387 Locate
rps12 gene − 70451 70564 114 Locate
clpP gene − 70708 72647 1940 Locate
psbB gene + 73126 74652 1527 Locate
psbT gene + 74844 74945 102 Locate
psbN gene − 75020 75151 132 Locate
psbH gene + 75255 75476 222 Locate
petB gene + 75601 76968 1368 Locate
petD gene + 77153 78339 1187 Locate
rpoA gene − 78509 79522 1014 Locate
rps11 gene − 79594 80010 417 Locate
rpl36 gene − 80112 80225 114 Locate
infA gene − 80321 80554 234 Locate
rps8 gene − 80673 81083 411 Locate
rpl14 gene − 81249 81617 369 Locate
rpl16 gene − 81745 82977 1233 Locate
rps3 gene − 83132 83794 663 Locate
rpl22 gene − 83796 84251 456 Locate
rps19 gene − 84311 84589 279 Locate
rpl2 gene − 84644 86126 1483 Locate
rpl23 gene − 86145 86426 282 Locate
trnI-CAU gene − 86586 86659 74 Locate
ycf2 gene + 86748 93557 6810 Locate
ycf15 gene + 93648 93896 249 Locate
trnL-CAA gene − 94152 94232 81 Locate
ndhB gene − 94775 96986 2212 Locate
rps7 gene − 97261 97728 468 Locate
rps12 gene − 97782 98572 791 Locate
trnV-GAC gene + 100139 100210 72 Locate
rrn16 gene + 100438 101928 1491 Locate
trnI-GAU gene + 102227 103247 1021 Locate
trnA-UGC gene + 103312 104198 887 Locate
rrn23 gene + 104368 107180 2813 Locate
rrn4.5 gene + 107279 107381 103 Locate
rrn5 gene + 107629 107749 121 Locate
trnR-ACG gene + 107984 108057 74 Locate
trnN-GUU gene − 108611 108682 72 Locate
ndhF gene − 109759 111999 2241 Locate
rpl32 gene + 112523 112699 177 Locate
trnL-UAG gene + 113133 113212 80 Locate
ccsA gene + 113308 114282 975 Locate
ndhD gene − 114519 116042 1524 Locate
psaC gene − 116141 116386 246 Locate
ndhE gene − 116648 116953 306 Locate
ndhG gene − 117174 117704 531 Locate
ndhI gene − 118069 118569 501 Locate
ndhA gene − 118651 120751 2101 Locate
ndhH gene − 120753 121934 1182 Locate
rps15 gene − 122037 122309 273 Locate
ycf1 gene − 122582 128233 5652 Locate
trnN-GUU gene + 128452 128523 72 Locate
trnR-ACG gene − 129077 129150 74 Locate
rrn5 gene − 129385 129505 121 Locate
rrn4.5 gene − 129753 129855 103 Locate
rrn23 gene − 129954 132766 2813 Locate
trnA-UGC gene − 132936 133822 887 Locate
trnI-GAU gene − 133887 134907 1021 Locate
ycf68 gene − 134513 134752 240 Locate
rrn16 gene − 135206 136696 1491 Locate
trnV-GAC gene − 136924 136995 72 Locate
rps12 gene + 138562 139352 791 Locate
rps7 gene + 139406 139873 468 Locate
ndhB gene + 140148 142359 2212 Locate
trnL-CAA gene + 142902 142982 81 Locate
ycf15 gene − 143238 143486 249 Locate
ycf2 gene − 143577 150386 6810 Locate
trnI-CAU gene + 150475 150548 74 Locate
rpl23 gene + 150708 150989 282 Locate
rpl2 gene + 151008 152490 1483 Locate
Status Available
Accession PQ059336.1
Length 152,586 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources