Scutellaria raddeana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059237.1 · 4–77 bp · −
psbA · PQ059237.1 · 375–1,433 bp · −
trnK-UUU · PQ059237.1 · 1,675–4,251 bp · −
matK · PQ059237.1 · 1,959–3,485 bp · −
rps16 · PQ059237.1 · 5,150–6,307 bp · −
trnQ-UUG · PQ059237.1 · 7,420–7,491 bp · −
trnS-GCU · PQ059237.1 · 8,608–8,695 bp · −
atpA · PQ059237.1 · 10,498–12,021 bp · −
atpF · PQ059237.1 · 12,103–13,331 bp · −
atpH · PQ059237.1 · 13,693–13,938 bp · −
atpI · PQ059237.1 · 14,926–15,669 bp · −
rps2 · PQ059237.1 · 16,014–16,724 bp · −
rpoC2 · PQ059237.1 · 16,938–21,143 bp · −
rpoC1 · PQ059237.1 · 21,298–24,132 bp · −
rpoB · PQ059237.1 · 24,159–27,371 bp · −
psbM · PQ059237.1 · 30,251–30,355 bp · −
trnD-GUC · PQ059237.1 · 30,870–30,943 bp · −
trnY-GUA · PQ059237.1 · 31,057–31,140 bp · −
trnE-UUC · PQ059237.1 · 31,200–31,272 bp · −
trnS-UGA · PQ059237.1 · 35,889–35,980 bp · −
trnfM-CAU · PQ059237.1 · 36,988–37,061 bp · −
rps14 · PQ059237.1 · 37,216–37,518 bp · −
psaB · PQ059237.1 · 37,647–39,851 bp · −
psaA · PQ059237.1 · 39,877–42,129 bp · −
ycf3 · PQ059237.1 · 42,825–44,746 bp · −
rps4 · PQ059237.1 · 45,990–46,595 bp · −
trnT-UGU · PQ059237.1 · 46,934–47,006 bp · −
ndhJ · PQ059237.1 · 49,267–49,743 bp · −
ndhK · PQ059237.1 · 49,852–50,529 bp · −
ndhC · PQ059237.1 · 50,583–50,945 bp · −
trnV-UAC · PQ059237.1 · 51,923–52,575 bp · −
atpE · PQ059237.1 · 53,030–53,431 bp · −
atpB · PQ059237.1 · 53,428–54,924 bp · −
psbJ · PQ059237.1 · 64,650–64,772 bp · −
psbL · PQ059237.1 · 64,906–65,022 bp · −
psbF · PQ059237.1 · 65,046–65,165 bp · −
psbE · PQ059237.1 · 65,180–65,431 bp · −
trnW-CCA · PQ059237.1 · 66,808–66,881 bp · −
trnP-UGG · PQ059237.1 · 67,051–67,124 bp · −
rpl20 · PQ059237.1 · 68,923–69,309 bp · −
rps12 · PQ059237.1 · 70,087–70,212 bp · −
rps12 · PQ059237.1 · 97,380–98,160 bp · −
clpP · PQ059237.1 · 70,354–72,283 bp · −
psbN · PQ059237.1 · 74,637–74,768 bp · −
rpoA · PQ059237.1 · 78,333–79,133 bp · −
rps11 · PQ059237.1 · 79,205–79,621 bp · −
rpl36 · PQ059237.1 · 79,723–79,836 bp · −
infA · PQ059237.1 · 79,931–80,164 bp · −
rps8 · PQ059237.1 · 80,288–80,698 bp · −
rpl14 · PQ059237.1 · 80,851–81,219 bp · −
rpl16 · PQ059237.1 · 81,346–82,572 bp · −
rps3 · PQ059237.1 · 82,728–83,390 bp · −
rpl22 · PQ059237.1 · 83,392–83,847 bp · −
rps19 · PQ059237.1 · 83,907–84,185 bp · −
rpl2 · PQ059237.1 · 84,239–85,720 bp · −
rpl23 · PQ059237.1 · 85,739–86,020 bp · −
trnI-CAU · PQ059237.1 · 86,180–86,253 bp · −
trnL-CAA · PQ059237.1 · 93,750–93,830 bp · −
ndhB · PQ059237.1 · 94,373–96,584 bp · −
rps7 · PQ059237.1 · 96,859–97,326 bp · −
trnN-GUU · PQ059237.1 · 108,195–108,266 bp · −
ndhF · PQ059237.1 · 109,323–111,584 bp · −
ndhD · PQ059237.1 · 113,917–115,419 bp · −
psaC · PQ059237.1 · 115,548–115,793 bp · −
ndhE · PQ059237.1 · 116,042–116,347 bp · −
ndhG · PQ059237.1 · 116,564–117,094 bp · −
ndhI · PQ059237.1 · 117,460–117,960 bp · −
ndhA · PQ059237.1 · 118,041–120,162 bp · −
ndhH · PQ059237.1 · 120,164–121,345 bp · −
rps15 · PQ059237.1 · 121,442–121,714 bp · −
ycf1 · PQ059237.1 · 121,910–127,546 bp · −
trnR-ACG · PQ059237.1 · 128,385–128,458 bp · −
rrn5 · PQ059237.1 · 128,693–128,813 bp · −
rrn4.5 · PQ059237.1 · 129,061–129,163 bp · −
rrn23 · PQ059237.1 · 129,262–132,073 bp · −
trnA-UGC · PQ059237.1 · 132,243–133,127 bp · −
trnI-GAU · PQ059237.1 · 133,192–134,212 bp · −
ycf68 · PQ059237.1 · 133,764–134,057 bp · −
rrn16 · PQ059237.1 · 134,511–136,001 bp · −
trnV-GAC · PQ059237.1 · 136,228–136,299 bp · −
ycf15 · PQ059237.1 · 142,541–142,789 bp · −
ycf2 · PQ059237.1 · 142,880–149,689 bp · −
psbK · PQ059237.1 · 7,816–8,001 bp · +
psbI · PQ059237.1 · 8,379–8,489 bp · +
trnG-UCC · PQ059237.1 · 9,398–10,155 bp · +
trnR-UCU · PQ059237.1 · 10,330–10,401 bp · +
trnC-GCA · PQ059237.1 · 28,532–28,602 bp · +
petN · PQ059237.1 · 29,314–29,403 bp · +
trnT-GGU · PQ059237.1 · 31,848–31,919 bp · +
psbD · PQ059237.1 · 33,224–34,285 bp · +
psbC · PQ059237.1 · 34,233–35,654 bp · +
psbZ · PQ059237.1 · 36,296–36,484 bp · +
trnG-GCC · PQ059237.1 · 36,763–36,833 bp · +
trnS-GGA · PQ059237.1 · 45,628–45,714 bp · +
trnL-UAA · PQ059237.1 · 47,691–48,250 bp · +
trnF-GAA · PQ059237.1 · 48,557–48,629 bp · +
trnM-CAU · PQ059237.1 · 52,764–52,836 bp · +
rbcL · PQ059237.1 · 55,676–57,139 bp · +
accD · PQ059237.1 · 57,844–59,322 bp · +
psaI · PQ059237.1 · 60,030–60,140 bp · +
ycf4 · PQ059237.1 · 60,574–61,128 bp · +
cemA · PQ059237.1 · 61,876–62,475 bp · +
petA · PQ059237.1 · 62,682–63,644 bp · +
petL · PQ059237.1 · 66,306–66,401 bp · +
petG · PQ059237.1 · 66,576–66,689 bp · +
psaJ · PQ059237.1 · 67,396–67,530 bp · +
rpl33 · PQ059237.1 · 68,008–68,208 bp · +
rps18 · PQ059237.1 · 68,383–68,688 bp · +
rps12 · PQ059237.1 · 137,871–138,651 bp · +
psbB · PQ059237.1 · 72,752–74,278 bp · +
psbT · PQ059237.1 · 74,469–74,576 bp · +
psbH · PQ059237.1 · 74,872–75,093 bp · +
petB · PQ059237.1 · 75,218–76,590 bp · +
petD · PQ059237.1 · 76,773–77,978 bp · +
ycf2 · PQ059237.1 · 86,342–93,151 bp · +
ycf15 · PQ059237.1 · 93,242–93,490 bp · +
trnV-GAC · PQ059237.1 · 99,732–99,803 bp · +
rrn16 · PQ059237.1 · 100,030–101,520 bp · +
trnI-GAU · PQ059237.1 · 101,819–102,839 bp · +
trnA-UGC · PQ059237.1 · 102,904–103,788 bp · +
rrn23 · PQ059237.1 · 103,958–106,769 bp · +
rrn4.5 · PQ059237.1 · 106,868–106,970 bp · +
rrn5 · PQ059237.1 · 107,218–107,338 bp · +
trnR-ACG · PQ059237.1 · 107,573–107,646 bp · +
rpl32 · PQ059237.1 · 111,911–112,087 bp · +
trnL-UAG · PQ059237.1 · 112,535–112,614 bp · +
ccsA · PQ059237.1 · 112,704–113,678 bp · +
trnN-GUU · PQ059237.1 · 127,765–127,836 bp · +
rps7 · PQ059237.1 · 138,705–139,172 bp · +
ndhB · PQ059237.1 · 139,447–141,658 bp · +
trnL-CAA · PQ059237.1 · 142,201–142,281 bp · +
trnI-CAU · PQ059237.1 · 149,778–149,851 bp · +
rpl23 · PQ059237.1 · 150,011–150,292 bp · +
rpl2 · PQ059237.1 · 150,311–151,792 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria raddeana
ANNOTATED PLASTOME
PQ059237.1
151,891 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37973 75946 113918 151891 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4251 2577 Locate
matK gene − 1959 3485 1527 Locate
rps16 gene − 5150 6307 1158 Locate
trnQ-UUG gene − 7420 7491 72 Locate
psbK gene + 7816 8001 186 Locate
psbI gene + 8379 8489 111 Locate
trnS-GCU gene − 8608 8695 88 Locate
trnG-UCC gene + 9398 10155 758 Locate
trnR-UCU gene + 10330 10401 72 Locate
atpA gene − 10498 12021 1524 Locate
atpF gene − 12103 13331 1229 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14926 15669 744 Locate
rps2 gene − 16014 16724 711 Locate
rpoC2 gene − 16938 21143 4206 Locate
rpoC1 gene − 21298 24132 2835 Locate
rpoB gene − 24159 27371 3213 Locate
trnC-GCA gene + 28532 28602 71 Locate
petN gene + 29314 29403 90 Locate
psbM gene − 30251 30355 105 Locate
trnD-GUC gene − 30870 30943 74 Locate
trnY-GUA gene − 31057 31140 84 Locate
trnE-UUC gene − 31200 31272 73 Locate
trnT-GGU gene + 31848 31919 72 Locate
psbD gene + 33224 34285 1062 Locate
psbC gene + 34233 35654 1422 Locate
trnS-UGA gene − 35889 35980 92 Locate
psbZ gene + 36296 36484 189 Locate
trnG-GCC gene + 36763 36833 71 Locate
trnfM-CAU gene − 36988 37061 74 Locate
rps14 gene − 37216 37518 303 Locate
psaB gene − 37647 39851 2205 Locate
psaA gene − 39877 42129 2253 Locate
ycf3 gene − 42825 44746 1922 Locate
trnS-GGA gene + 45628 45714 87 Locate
rps4 gene − 45990 46595 606 Locate
trnT-UGU gene − 46934 47006 73 Locate
trnL-UAA gene + 47691 48250 560 Locate
trnF-GAA gene + 48557 48629 73 Locate
ndhJ gene − 49267 49743 477 Locate
ndhK gene − 49852 50529 678 Locate
ndhC gene − 50583 50945 363 Locate
trnV-UAC gene − 51923 52575 653 Locate
trnM-CAU gene + 52764 52836 73 Locate
atpE gene − 53030 53431 402 Locate
atpB gene − 53428 54924 1497 Locate
rbcL gene + 55676 57139 1464 Locate
accD gene + 57844 59322 1479 Locate
psaI gene + 60030 60140 111 Locate
ycf4 gene + 60574 61128 555 Locate
cemA gene + 61876 62475 600 Locate
petA gene + 62682 63644 963 Locate
psbJ gene − 64650 64772 123 Locate
psbL gene − 64906 65022 117 Locate
psbF gene − 65046 65165 120 Locate
psbE gene − 65180 65431 252 Locate
petL gene + 66306 66401 96 Locate
petG gene + 66576 66689 114 Locate
trnW-CCA gene − 66808 66881 74 Locate
trnP-UGG gene − 67051 67124 74 Locate
psaJ gene + 67396 67530 135 Locate
rpl33 gene + 68008 68208 201 Locate
rps18 gene + 68383 68688 306 Locate
rpl20 gene − 68923 69309 387 Locate
rps12 gene − 70087 70212 126 Locate
clpP gene − 70354 72283 1930 Locate
psbB gene + 72752 74278 1527 Locate
psbT gene + 74469 74576 108 Locate
psbN gene − 74637 74768 132 Locate
psbH gene + 74872 75093 222 Locate
petB gene + 75218 76590 1373 Locate
petD gene + 76773 77978 1206 Locate
rpoA gene − 78333 79133 801 Locate
rps11 gene − 79205 79621 417 Locate
rpl36 gene − 79723 79836 114 Locate
infA gene − 79931 80164 234 Locate
rps8 gene − 80288 80698 411 Locate
rpl14 gene − 80851 81219 369 Locate
rpl16 gene − 81346 82572 1227 Locate
rps3 gene − 82728 83390 663 Locate
rpl22 gene − 83392 83847 456 Locate
rps19 gene − 83907 84185 279 Locate
rpl2 gene − 84239 85720 1482 Locate
rpl23 gene − 85739 86020 282 Locate
trnI-CAU gene − 86180 86253 74 Locate
ycf2 gene + 86342 93151 6810 Locate
ycf15 gene + 93242 93490 249 Locate
trnL-CAA gene − 93750 93830 81 Locate
ndhB gene − 94373 96584 2212 Locate
rps7 gene − 96859 97326 468 Locate
rps12 gene − 97380 98160 781 Locate
trnV-GAC gene + 99732 99803 72 Locate
rrn16 gene + 100030 101520 1491 Locate
trnI-GAU gene + 101819 102839 1021 Locate
trnA-UGC gene + 102904 103788 885 Locate
rrn23 gene + 103958 106769 2812 Locate
rrn4.5 gene + 106868 106970 103 Locate
rrn5 gene + 107218 107338 121 Locate
trnR-ACG gene + 107573 107646 74 Locate
trnN-GUU gene − 108195 108266 72 Locate
ndhF gene − 109323 111584 2262 Locate
rpl32 gene + 111911 112087 177 Locate
trnL-UAG gene + 112535 112614 80 Locate
ccsA gene + 112704 113678 975 Locate
ndhD gene − 113917 115419 1503 Locate
psaC gene − 115548 115793 246 Locate
ndhE gene − 116042 116347 306 Locate
ndhG gene − 116564 117094 531 Locate
ndhI gene − 117460 117960 501 Locate
ndhA gene − 118041 120162 2122 Locate
ndhH gene − 120164 121345 1182 Locate
rps15 gene − 121442 121714 273 Locate
ycf1 gene − 121910 127546 5637 Locate
trnN-GUU gene + 127765 127836 72 Locate
trnR-ACG gene − 128385 128458 74 Locate
rrn5 gene − 128693 128813 121 Locate
rrn4.5 gene − 129061 129163 103 Locate
rrn23 gene − 129262 132073 2812 Locate
trnA-UGC gene − 132243 133127 885 Locate
trnI-GAU gene − 133192 134212 1021 Locate
ycf68 gene − 133764 134057 294 Locate
rrn16 gene − 134511 136001 1491 Locate
trnV-GAC gene − 136228 136299 72 Locate
rps12 gene + 137871 138651 781 Locate
rps7 gene + 138705 139172 468 Locate
ndhB gene + 139447 141658 2212 Locate
trnL-CAA gene + 142201 142281 81 Locate
ycf15 gene − 142541 142789 249 Locate
ycf2 gene − 142880 149689 6810 Locate
trnI-CAU gene + 149778 149851 74 Locate
rpl23 gene + 150011 150292 282 Locate
rpl2 gene + 150311 151792 1482 Locate
Status Available
Accession PQ059237.1
Length 151,891 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources