Scutellaria ramosissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059244.1 · 4–77 bp · −
psbA · PQ059244.1 · 374–1,432 bp · −
trnK-UUU · PQ059244.1 · 1,674–4,255 bp · −
matK · PQ059244.1 · 1,964–3,490 bp · −
rps16 · PQ059244.1 · 5,155–6,315 bp · −
trnQ-UUG · PQ059244.1 · 7,060–7,131 bp · −
trnS-GCU · PQ059244.1 · 8,260–8,347 bp · −
atpA · PQ059244.1 · 10,141–11,664 bp · −
atpF · PQ059244.1 · 11,746–12,975 bp · −
atpH · PQ059244.1 · 13,336–13,581 bp · −
atpI · PQ059244.1 · 14,569–15,312 bp · −
rps2 · PQ059244.1 · 15,659–16,369 bp · −
rpoC2 · PQ059244.1 · 16,584–20,789 bp · −
rpoC1 · PQ059244.1 · 20,944–23,780 bp · −
rpoB · PQ059244.1 · 23,807–27,019 bp · −
psbM · PQ059244.1 · 30,083–30,187 bp · −
trnD-GUC · PQ059244.1 · 30,713–30,786 bp · −
trnY-GUA · PQ059244.1 · 30,900–30,983 bp · −
trnE-UUC · PQ059244.1 · 31,043–31,115 bp · −
trnS-UGA · PQ059244.1 · 35,735–35,826 bp · −
trnfM-CAU · PQ059244.1 · 36,829–36,902 bp · −
rps14 · PQ059244.1 · 37,052–37,354 bp · −
psaB · PQ059244.1 · 37,483–39,687 bp · −
psaA · PQ059244.1 · 39,713–41,965 bp · −
ycf3 · PQ059244.1 · 42,658–44,586 bp · −
rps4 · PQ059244.1 · 45,831–46,436 bp · −
trnT-UGU · PQ059244.1 · 46,783–46,855 bp · −
ndhJ · PQ059244.1 · 49,118–49,594 bp · −
ndhK · PQ059244.1 · 49,703–50,380 bp · −
ndhC · PQ059244.1 · 50,434–50,796 bp · −
trnV-UAC · PQ059244.1 · 51,782–52,434 bp · −
atpE · PQ059244.1 · 52,889–53,290 bp · −
atpB · PQ059244.1 · 53,287–54,783 bp · −
psbJ · PQ059244.1 · 64,520–64,642 bp · −
psbL · PQ059244.1 · 64,776–64,997 bp · −
psbF · PQ059244.1 · 64,916–65,035 bp · −
psbE · PQ059244.1 · 65,050–65,301 bp · −
trnW-CCA · PQ059244.1 · 66,680–66,753 bp · −
trnP-UGG · PQ059244.1 · 66,923–66,996 bp · −
rpl20 · PQ059244.1 · 68,794–69,180 bp · −
rps12 · PQ059244.1 · 69,975–70,088 bp · −
rps12 · PQ059244.1 · 97,235–98,025 bp · −
clpP · PQ059244.1 · 70,230–72,158 bp · −
psbN · PQ059244.1 · 74,496–74,627 bp · −
rpoA · PQ059244.1 · 78,189–78,989 bp · −
rps11 · PQ059244.1 · 79,061–79,477 bp · −
rpl36 · PQ059244.1 · 79,579–79,692 bp · −
infA · PQ059244.1 · 79,787–80,020 bp · −
rps8 · PQ059244.1 · 80,144–80,554 bp · −
rpl14 · PQ059244.1 · 80,707–81,075 bp · −
rpl16 · PQ059244.1 · 81,202–82,435 bp · −
rps3 · PQ059244.1 · 82,591–83,253 bp · −
rpl22 · PQ059244.1 · 83,255–83,710 bp · −
rps19 · PQ059244.1 · 83,770–84,048 bp · −
rpl2 · PQ059244.1 · 84,103–85,584 bp · −
rpl23 · PQ059244.1 · 85,603–85,884 bp · −
trnI-CAU · PQ059244.1 · 86,044–86,117 bp · −
trnL-CAA · PQ059244.1 · 93,605–93,685 bp · −
ndhB · PQ059244.1 · 94,228–96,385 bp · −
rps7 · PQ059244.1 · 96,714–97,181 bp · −
trnN-GUU · PQ059244.1 · 108,065–108,136 bp · −
ndhF · PQ059244.1 · 109,193–111,454 bp · −
ndhD · PQ059244.1 · 113,835–115,364 bp · −
psaC · PQ059244.1 · 115,465–115,710 bp · −
ndhE · PQ059244.1 · 115,966–116,271 bp · −
ndhG · PQ059244.1 · 116,488–117,018 bp · −
ndhI · PQ059244.1 · 117,385–117,885 bp · −
ndhA · PQ059244.1 · 117,971–120,092 bp · −
ndhH · PQ059244.1 · 120,094–121,305 bp · −
rps15 · PQ059244.1 · 121,372–121,644 bp · −
ycf1 · PQ059244.1 · 121,842–127,478 bp · −
trnR-ACG · PQ059244.1 · 128,317–128,390 bp · −
rrn5 · PQ059244.1 · 128,625–128,745 bp · −
rrn4.5 · PQ059244.1 · 128,993–129,095 bp · −
rrn23 · PQ059244.1 · 129,194–132,005 bp · −
trnA-UGC · PQ059244.1 · 132,175–133,064 bp · −
trnI-GAU · PQ059244.1 · 133,129–134,149 bp · −
ycf68 · PQ059244.1 · 133,701–133,994 bp · −
rrn16 · PQ059244.1 · 134,448–135,938 bp · −
trnV-GAC · PQ059244.1 · 136,165–136,236 bp · −
ycf15 · PQ059244.1 · 142,488–142,736 bp · −
ycf2 · PQ059244.1 · 142,827–149,627 bp · −
psbK · PQ059244.1 · 7,456–7,641 bp · +
psbI · PQ059244.1 · 8,031–8,141 bp · +
trnG-UCC · PQ059244.1 · 9,051–9,807 bp · +
trnR-UCU · PQ059244.1 · 9,973–10,044 bp · +
trnC-GCA · PQ059244.1 · 28,180–28,250 bp · +
petN · PQ059244.1 · 28,965–29,054 bp · +
trnT-GGU · PQ059244.1 · 31,691–31,762 bp · +
psbD · PQ059244.1 · 33,069–34,130 bp · +
psbC · PQ059244.1 · 34,078–35,499 bp · +
psbZ · PQ059244.1 · 36,142–36,330 bp · +
trnG-GCC · PQ059244.1 · 36,607–36,677 bp · +
trnS-GGA · PQ059244.1 · 45,469–45,555 bp · +
trnL-UAA · PQ059244.1 · 47,537–48,096 bp · +
trnF-GAA · PQ059244.1 · 48,397–48,469 bp · +
trnM-CAU · PQ059244.1 · 52,623–52,695 bp · +
rbcL · PQ059244.1 · 55,535–56,998 bp · +
accD · PQ059244.1 · 57,712–59,190 bp · +
psaI · PQ059244.1 · 59,897–60,007 bp · +
ycf4 · PQ059244.1 · 60,441–60,995 bp · +
cemA · PQ059244.1 · 61,743–62,342 bp · +
petA · PQ059244.1 · 62,549–63,511 bp · +
petL · PQ059244.1 · 66,177–66,272 bp · +
petG · PQ059244.1 · 66,448–66,561 bp · +
psaJ · PQ059244.1 · 67,268–67,402 bp · +
rpl33 · PQ059244.1 · 67,879–68,079 bp · +
rps18 · PQ059244.1 · 68,254–68,559 bp · +
rps12 · PQ059244.1 · 137,808–138,598 bp · +
psbB · PQ059244.1 · 72,610–74,136 bp · +
psbT · PQ059244.1 · 74,328–74,435 bp · +
psbH · PQ059244.1 · 74,731–74,952 bp · +
petB · PQ059244.1 · 75,077–76,445 bp · +
petD · PQ059244.1 · 76,628–77,834 bp · +
ycf2 · PQ059244.1 · 86,206–93,006 bp · +
ycf15 · PQ059244.1 · 93,097–93,345 bp · +
trnV-GAC · PQ059244.1 · 99,597–99,668 bp · +
rrn16 · PQ059244.1 · 99,895–101,385 bp · +
trnI-GAU · PQ059244.1 · 101,684–102,704 bp · +
trnA-UGC · PQ059244.1 · 102,769–103,658 bp · +
rrn23 · PQ059244.1 · 103,828–106,639 bp · +
rrn4.5 · PQ059244.1 · 106,738–106,840 bp · +
rrn5 · PQ059244.1 · 107,088–107,208 bp · +
trnR-ACG · PQ059244.1 · 107,443–107,516 bp · +
rpl32 · PQ059244.1 · 111,782–111,958 bp · +
trnL-UAG · PQ059244.1 · 112,406–112,485 bp · +
ccsA · PQ059244.1 · 112,587–113,561 bp · +
trnN-GUU · PQ059244.1 · 127,697–127,768 bp · +
rps7 · PQ059244.1 · 138,652–139,119 bp · +
ndhB · PQ059244.1 · 139,448–141,605 bp · +
trnL-CAA · PQ059244.1 · 142,148–142,228 bp · +
trnI-CAU · PQ059244.1 · 149,716–149,789 bp · +
rpl23 · PQ059244.1 · 149,949–150,230 bp · +
rpl2 · PQ059244.1 · 150,249–151,730 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria ramosissima
ANNOTATED PLASTOME
PQ059244.1
151,830 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37958 75915 113872 151830 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5155 6315 1161 Locate
trnQ-UUG gene − 7060 7131 72 Locate
psbK gene + 7456 7641 186 Locate
psbI gene + 8031 8141 111 Locate
trnS-GCU gene − 8260 8347 88 Locate
trnG-UCC gene + 9051 9807 757 Locate
trnR-UCU gene + 9973 10044 72 Locate
atpA gene − 10141 11664 1524 Locate
atpF gene − 11746 12975 1230 Locate
atpH gene − 13336 13581 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15659 16369 711 Locate
rpoC2 gene − 16584 20789 4206 Locate
rpoC1 gene − 20944 23780 2837 Locate
rpoB gene − 23807 27019 3213 Locate
trnC-GCA gene + 28180 28250 71 Locate
petN gene + 28965 29054 90 Locate
psbM gene − 30083 30187 105 Locate
trnD-GUC gene − 30713 30786 74 Locate
trnY-GUA gene − 30900 30983 84 Locate
trnE-UUC gene − 31043 31115 73 Locate
trnT-GGU gene + 31691 31762 72 Locate
psbD gene + 33069 34130 1062 Locate
psbC gene + 34078 35499 1422 Locate
trnS-UGA gene − 35735 35826 92 Locate
psbZ gene + 36142 36330 189 Locate
trnG-GCC gene + 36607 36677 71 Locate
trnfM-CAU gene − 36829 36902 74 Locate
rps14 gene − 37052 37354 303 Locate
psaB gene − 37483 39687 2205 Locate
psaA gene − 39713 41965 2253 Locate
ycf3 gene − 42658 44586 1929 Locate
trnS-GGA gene + 45469 45555 87 Locate
rps4 gene − 45831 46436 606 Locate
trnT-UGU gene − 46783 46855 73 Locate
trnL-UAA gene + 47537 48096 560 Locate
trnF-GAA gene + 48397 48469 73 Locate
ndhJ gene − 49118 49594 477 Locate
ndhK gene − 49703 50380 678 Locate
ndhC gene − 50434 50796 363 Locate
trnV-UAC gene − 51782 52434 653 Locate
trnM-CAU gene + 52623 52695 73 Locate
atpE gene − 52889 53290 402 Locate
atpB gene − 53287 54783 1497 Locate
rbcL gene + 55535 56998 1464 Locate
accD gene + 57712 59190 1479 Locate
psaI gene + 59897 60007 111 Locate
ycf4 gene + 60441 60995 555 Locate
cemA gene + 61743 62342 600 Locate
petA gene + 62549 63511 963 Locate
psbJ gene − 64520 64642 123 Locate
psbL gene − 64776 64997 222 Locate
psbF gene − 64916 65035 120 Locate
psbE gene − 65050 65301 252 Locate
petL gene + 66177 66272 96 Locate
petG gene + 66448 66561 114 Locate
trnW-CCA gene − 66680 66753 74 Locate
trnP-UGG gene − 66923 66996 74 Locate
psaJ gene + 67268 67402 135 Locate
rpl33 gene + 67879 68079 201 Locate
rps18 gene + 68254 68559 306 Locate
rpl20 gene − 68794 69180 387 Locate
rps12 gene − 69975 70088 114 Locate
clpP gene − 70230 72158 1929 Locate
psbB gene + 72610 74136 1527 Locate
psbT gene + 74328 74435 108 Locate
psbN gene − 74496 74627 132 Locate
psbH gene + 74731 74952 222 Locate
petB gene + 75077 76445 1369 Locate
petD gene + 76628 77834 1207 Locate
rpoA gene − 78189 78989 801 Locate
rps11 gene − 79061 79477 417 Locate
rpl36 gene − 79579 79692 114 Locate
infA gene − 79787 80020 234 Locate
rps8 gene − 80144 80554 411 Locate
rpl14 gene − 80707 81075 369 Locate
rpl16 gene − 81202 82435 1234 Locate
rps3 gene − 82591 83253 663 Locate
rpl22 gene − 83255 83710 456 Locate
rps19 gene − 83770 84048 279 Locate
rpl2 gene − 84103 85584 1482 Locate
rpl23 gene − 85603 85884 282 Locate
trnI-CAU gene − 86044 86117 74 Locate
ycf2 gene + 86206 93006 6801 Locate
ycf15 gene + 93097 93345 249 Locate
trnL-CAA gene − 93605 93685 81 Locate
ndhB gene − 94228 96385 2158 Locate
rps7 gene − 96714 97181 468 Locate
rps12 gene − 97235 98025 791 Locate
trnV-GAC gene + 99597 99668 72 Locate
rrn16 gene + 99895 101385 1491 Locate
trnI-GAU gene + 101684 102704 1021 Locate
trnA-UGC gene + 102769 103658 890 Locate
rrn23 gene + 103828 106639 2812 Locate
rrn4.5 gene + 106738 106840 103 Locate
rrn5 gene + 107088 107208 121 Locate
trnR-ACG gene + 107443 107516 74 Locate
trnN-GUU gene − 108065 108136 72 Locate
ndhF gene − 109193 111454 2262 Locate
rpl32 gene + 111782 111958 177 Locate
trnL-UAG gene + 112406 112485 80 Locate
ccsA gene + 112587 113561 975 Locate
ndhD gene − 113835 115364 1530 Locate
psaC gene − 115465 115710 246 Locate
ndhE gene − 115966 116271 306 Locate
ndhG gene − 116488 117018 531 Locate
ndhI gene − 117385 117885 501 Locate
ndhA gene − 117971 120092 2122 Locate
ndhH gene − 120094 121305 1212 Locate
rps15 gene − 121372 121644 273 Locate
ycf1 gene − 121842 127478 5637 Locate
trnN-GUU gene + 127697 127768 72 Locate
trnR-ACG gene − 128317 128390 74 Locate
rrn5 gene − 128625 128745 121 Locate
rrn4.5 gene − 128993 129095 103 Locate
rrn23 gene − 129194 132005 2812 Locate
trnA-UGC gene − 132175 133064 890 Locate
trnI-GAU gene − 133129 134149 1021 Locate
ycf68 gene − 133701 133994 294 Locate
rrn16 gene − 134448 135938 1491 Locate
trnV-GAC gene − 136165 136236 72 Locate
rps12 gene + 137808 138598 791 Locate
rps7 gene + 138652 139119 468 Locate
ndhB gene + 139448 141605 2158 Locate
trnL-CAA gene + 142148 142228 81 Locate
ycf15 gene − 142488 142736 249 Locate
ycf2 gene − 142827 149627 6801 Locate
trnI-CAU gene + 149716 149789 74 Locate
rpl23 gene + 149949 150230 282 Locate
rpl2 gene + 150249 151730 1482 Locate
Status Available
Accession PQ059244.1
Length 151,830 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources