Scutellaria rehderiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MT982397.1 · 2–75 bp · −
psbA · MT982397.1 · 378–1,436 bp · −
trnK-UUU · MT982397.1 · 1,684–4,257 bp · −
matK · MT982397.1 · 1,973–3,502 bp · −
rps16 · MT982397.1 · 5,152–6,317 bp · −
trnQ-UUG · MT982397.1 · 7,423–7,494 bp · −
trnS-GCU · MT982397.1 · 8,630–8,717 bp · −
atpA · MT982397.1 · 10,441–11,964 bp · −
atpF · MT982397.1 · 12,054–13,282 bp · −
atpH · MT982397.1 · 13,644–13,889 bp · −
atpI · MT982397.1 · 14,864–15,607 bp · −
rps2 · MT982397.1 · 15,952–16,662 bp · −
rpoC2 · MT982397.1 · 16,876–21,081 bp · −
rpoC1 · MT982397.1 · 21,236–24,087 bp · −
rpoB · MT982397.1 · 24,093–27,305 bp · −
psbM · MT982397.1 · 30,015–30,119 bp · −
trnD-GUC · MT982397.1 · 30,646–30,719 bp · −
trnY-GUA · MT982397.1 · 30,838–30,921 bp · −
trnS-UGA · MT982397.1 · 35,673–35,764 bp · −
trnfM-CAU · MT982397.1 · 36,763–36,836 bp · −
rps14 · MT982397.1 · 36,986–37,288 bp · −
psaB · MT982397.1 · 37,416–39,620 bp · −
psaA · MT982397.1 · 39,646–41,898 bp · −
ycf3 · MT982397.1 · 42,587–44,511 bp · −
rps4 · MT982397.1 · 45,774–46,379 bp · −
trnT-UGU · MT982397.1 · 46,729–46,801 bp · −
ndhJ · MT982397.1 · 49,098–49,574 bp · −
ndhK · MT982397.1 · 49,683–50,360 bp · −
ndhC · MT982397.1 · 50,413–50,775 bp · −
trnV-UAC · MT982397.1 · 51,719–52,371 bp · −
atpE · MT982397.1 · 52,841–53,242 bp · −
atpB · MT982397.1 · 53,239–54,735 bp · −
psbJ · MT982397.1 · 64,468–64,590 bp · −
psbL · MT982397.1 · 64,724–64,840 bp · −
psbF · MT982397.1 · 64,864–64,983 bp · −
psbE · MT982397.1 · 64,998–65,249 bp · −
trnW-CCA · MT982397.1 · 66,621–66,694 bp · −
trnP-UGG · MT982397.1 · 66,864–66,937 bp · −
rpl20 · MT982397.1 · 68,733–69,119 bp · −
rps12 · MT982397.1 · 69,905–70,030 bp · −
rps12 · MT982397.1 · 97,225–98,015 bp · −
clpP · MT982397.1 · 70,172–72,112 bp · −
psbN · MT982397.1 · 74,456–74,587 bp · −
rpoA · MT982397.1 · 78,166–78,966 bp · −
rps11 · MT982397.1 · 79,038–79,454 bp · −
rpl36 · MT982397.1 · 79,556–79,669 bp · −
infA · MT982397.1 · 79,764–79,997 bp · −
rps8 · MT982397.1 · 80,120–80,530 bp · −
rpl14 · MT982397.1 · 80,687–81,055 bp · −
rpl16 · MT982397.1 · 81,182–82,414 bp · −
rps3 · MT982397.1 · 82,570–83,232 bp · −
rpl22 · MT982397.1 · 83,234–83,689 bp · −
rps19 · MT982397.1 · 83,749–84,027 bp · −
rpl2 · MT982397.1 · 84,084–85,565 bp · −
rpl23 · MT982397.1 · 85,584–85,865 bp · −
trnI-CAU · MT982397.1 · 86,025–86,098 bp · −
trnL-CAA · MT982397.1 · 93,595–93,675 bp · −
ndhB · MT982397.1 · 94,218–96,429 bp · −
rps7 · MT982397.1 · 96,704–97,171 bp · −
trnN-GUU · MT982397.1 · 108,061–108,132 bp · −
ndhF · MT982397.1 · 109,209–111,449 bp · −
ndhD · MT982397.1 · 113,806–115,335 bp · −
psaC · MT982397.1 · 115,436–115,681 bp · −
ndhE · MT982397.1 · 115,937–116,242 bp · −
ndhG · MT982397.1 · 116,464–116,994 bp · −
ndhI · MT982397.1 · 117,357–117,857 bp · −
ndhA · MT982397.1 · 117,938–120,044 bp · −
ndhH · MT982397.1 · 120,046–121,227 bp · −
rps15 · MT982397.1 · 121,324–121,596 bp · −
ycf1 · MT982397.1 · 121,791–127,337 bp · −
trnR-ACG · MT982397.1 · 128,295–128,368 bp · −
rrn5 · MT982397.1 · 128,603–128,723 bp · −
rrn4.5 · MT982397.1 · 128,971–129,073 bp · −
rrn23 · MT982397.1 · 129,172–131,983 bp · −
trnA-UGC · MT982397.1 · 132,153–133,041 bp · −
trnI-GAU · MT982397.1 · 133,106–134,125 bp · −
rrn16 · MT982397.1 · 134,424–135,914 bp · −
trnV-GAC · MT982397.1 · 136,141–136,212 bp · −
ycf15 · MT982397.1 · 142,464–142,712 bp · −
ycf2 · MT982397.1 · 142,803–149,612 bp · −
psbK · MT982397.1 · 7,816–8,001 bp · +
psbI · MT982397.1 · 8,404–8,514 bp · +
trnG-UCC · MT982397.1 · 9,345–10,098 bp · +
trnR-UCU · MT982397.1 · 10,273–10,344 bp · +
trnC-GCA · MT982397.1 · 28,467–28,537 bp · +
petN · MT982397.1 · 28,826–28,915 bp · +
trnT-GGU · MT982397.1 · 31,622–31,693 bp · +
psbD · MT982397.1 · 33,008–34,069 bp · +
psbC · MT982397.1 · 34,017–35,438 bp · +
psbZ · MT982397.1 · 36,081–36,269 bp · +
trnG-GCC · MT982397.1 · 36,545–36,615 bp · +
trnS-GGA · MT982397.1 · 45,406–45,492 bp · +
trnL-UAA · MT982397.1 · 47,492–48,067 bp · +
trnF-GAA · MT982397.1 · 48,378–48,450 bp · +
trnM-CAU · MT982397.1 · 52,560–52,632 bp · +
rbcL · MT982397.1 · 55,500–56,942 bp · +
accD · MT982397.1 · 57,658–59,136 bp · +
psaI · MT982397.1 · 59,855–59,965 bp · +
ycf4 · MT982397.1 · 60,399–60,953 bp · +
cemA · MT982397.1 · 61,585–62,295 bp · +
petA · MT982397.1 · 62,497–63,459 bp · +
petL · MT982397.1 · 66,118–66,213 bp · +
petG · MT982397.1 · 66,389–66,502 bp · +
psaJ · MT982397.1 · 67,208–67,342 bp · +
rpl33 · MT982397.1 · 67,818–68,018 bp · +
rps18 · MT982397.1 · 68,193–68,498 bp · +
rps12 · MT982397.1 · 137,784–138,574 bp · +
psbB · MT982397.1 · 72,570–74,096 bp · +
psbT · MT982397.1 · 74,288–74,395 bp · +
psbH · MT982397.1 · 74,691–74,912 bp · +
petB · MT982397.1 · 75,037–76,405 bp · +
petD · MT982397.1 · 76,594–77,790 bp · +
ycf2 · MT982397.1 · 86,187–92,996 bp · +
ycf15 · MT982397.1 · 93,087–93,335 bp · +
trnV-GAC · MT982397.1 · 99,587–99,658 bp · +
rrn16 · MT982397.1 · 99,885–101,375 bp · +
trnI-GAU · MT982397.1 · 101,674–102,693 bp · +
trnA-UGC · MT982397.1 · 102,758–103,646 bp · +
rrn23 · MT982397.1 · 103,816–106,627 bp · +
rrn4.5 · MT982397.1 · 106,726–106,828 bp · +
rrn5 · MT982397.1 · 107,076–107,196 bp · +
trnR-ACG · MT982397.1 · 107,431–107,504 bp · +
rpl32 · MT982397.1 · 111,962–112,138 bp · +
trnL-UAG · MT982397.1 · 112,424–112,503 bp · +
ccsA · MT982397.1 · 112,598–113,572 bp · +
trnN-GUU · MT982397.1 · 127,667–127,738 bp · +
rps7 · MT982397.1 · 138,628–139,095 bp · +
ndhB · MT982397.1 · 139,370–141,581 bp · +
trnL-CAA · MT982397.1 · 142,124–142,204 bp · +
trnI-CAU · MT982397.1 · 149,701–149,774 bp · +
rpl23 · MT982397.1 · 149,934–150,215 bp · +
rpl2 · MT982397.1 · 150,234–151,715 bp · +
rps19 · MT982397.1 · 151,772–151,827 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria rehderiana
ANNOTATED PLASTOME
MT982397.1
151,827 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37957 75914 113870 151827 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1684 4257 2574 Locate
matK gene − 1973 3502 1530 Locate
rps16 gene − 5152 6317 1166 Locate
trnQ-UUG gene − 7423 7494 72 Locate
psbK gene + 7816 8001 186 Locate
psbI gene + 8404 8514 111 Locate
trnS-GCU gene − 8630 8717 88 Locate
trnG-UCC gene + 9345 10098 754 Locate
trnR-UCU gene + 10273 10344 72 Locate
atpA gene − 10441 11964 1524 Locate
atpF gene − 12054 13282 1229 Locate
atpH gene − 13644 13889 246 Locate
atpI gene − 14864 15607 744 Locate
rps2 gene − 15952 16662 711 Locate
rpoC2 gene − 16876 21081 4206 Locate
rpoC1 gene − 21236 24087 2852 Locate
rpoB gene − 24093 27305 3213 Locate
trnC-GCA gene + 28467 28537 71 Locate
petN gene + 28826 28915 90 Locate
psbM gene − 30015 30119 105 Locate
trnD-GUC gene − 30646 30719 74 Locate
trnY-GUA gene − 30838 30921 84 Locate
trnT-GGU gene + 31622 31693 72 Locate
psbD gene + 33008 34069 1062 Locate
psbC gene + 34017 35438 1422 Locate
trnS-UGA gene − 35673 35764 92 Locate
psbZ gene + 36081 36269 189 Locate
trnG-GCC gene + 36545 36615 71 Locate
trnfM-CAU gene − 36763 36836 74 Locate
rps14 gene − 36986 37288 303 Locate
psaB gene − 37416 39620 2205 Locate
psaA gene − 39646 41898 2253 Locate
ycf3 gene − 42587 44511 1925 Locate
trnS-GGA gene + 45406 45492 87 Locate
rps4 gene − 45774 46379 606 Locate
trnT-UGU gene − 46729 46801 73 Locate
trnL-UAA gene + 47492 48067 576 Locate
trnF-GAA gene + 48378 48450 73 Locate
ndhJ gene − 49098 49574 477 Locate
ndhK gene − 49683 50360 678 Locate
ndhC gene − 50413 50775 363 Locate
trnV-UAC gene − 51719 52371 653 Locate
trnM-CAU gene + 52560 52632 73 Locate
atpE gene − 52841 53242 402 Locate
atpB gene − 53239 54735 1497 Locate
rbcL gene + 55500 56942 1443 Locate
accD gene + 57658 59136 1479 Locate
psaI gene + 59855 59965 111 Locate
ycf4 gene + 60399 60953 555 Locate
cemA gene + 61585 62295 711 Locate
petA gene + 62497 63459 963 Locate
psbJ gene − 64468 64590 123 Locate
psbL gene − 64724 64840 117 Locate
psbF gene − 64864 64983 120 Locate
psbE gene − 64998 65249 252 Locate
petL gene + 66118 66213 96 Locate
petG gene + 66389 66502 114 Locate
trnW-CCA gene − 66621 66694 74 Locate
trnP-UGG gene − 66864 66937 74 Locate
psaJ gene + 67208 67342 135 Locate
rpl33 gene + 67818 68018 201 Locate
rps18 gene + 68193 68498 306 Locate
rpl20 gene − 68733 69119 387 Locate
rps12 gene − 69905 70030 126 Locate
clpP gene − 70172 72112 1941 Locate
psbB gene + 72570 74096 1527 Locate
psbT gene + 74288 74395 108 Locate
psbN gene − 74456 74587 132 Locate
psbH gene + 74691 74912 222 Locate
petB gene + 75037 76405 1369 Locate
petD gene + 76594 77790 1197 Locate
rpoA gene − 78166 78966 801 Locate
rps11 gene − 79038 79454 417 Locate
rpl36 gene − 79556 79669 114 Locate
infA gene − 79764 79997 234 Locate
rps8 gene − 80120 80530 411 Locate
rpl14 gene − 80687 81055 369 Locate
rpl16 gene − 81182 82414 1233 Locate
rps3 gene − 82570 83232 663 Locate
rpl22 gene − 83234 83689 456 Locate
rps19 gene − 83749 84027 279 Locate
rpl2 gene − 84084 85565 1482 Locate
rpl23 gene − 85584 85865 282 Locate
trnI-CAU gene − 86025 86098 74 Locate
ycf2 gene + 86187 92996 6810 Locate
ycf15 gene + 93087 93335 249 Locate
trnL-CAA gene − 93595 93675 81 Locate
ndhB gene − 94218 96429 2212 Locate
rps7 gene − 96704 97171 468 Locate
rps12 gene − 97225 98015 791 Locate
trnV-GAC gene + 99587 99658 72 Locate
rrn16 gene + 99885 101375 1491 Locate
trnI-GAU gene + 101674 102693 1020 Locate
trnA-UGC gene + 102758 103646 889 Locate
rrn23 gene + 103816 106627 2812 Locate
rrn4.5 gene + 106726 106828 103 Locate
rrn5 gene + 107076 107196 121 Locate
trnR-ACG gene + 107431 107504 74 Locate
trnN-GUU gene − 108061 108132 72 Locate
ndhF gene − 109209 111449 2241 Locate
rpl32 gene + 111962 112138 177 Locate
trnL-UAG gene + 112424 112503 80 Locate
ccsA gene + 112598 113572 975 Locate
ndhD gene − 113806 115335 1530 Locate
psaC gene − 115436 115681 246 Locate
ndhE gene − 115937 116242 306 Locate
ndhG gene − 116464 116994 531 Locate
ndhI gene − 117357 117857 501 Locate
ndhA gene − 117938 120044 2107 Locate
ndhH gene − 120046 121227 1182 Locate
rps15 gene − 121324 121596 273 Locate
ycf1 gene − 121791 127337 5547 Locate
trnN-GUU gene + 127667 127738 72 Locate
trnR-ACG gene − 128295 128368 74 Locate
rrn5 gene − 128603 128723 121 Locate
rrn4.5 gene − 128971 129073 103 Locate
rrn23 gene − 129172 131983 2812 Locate
trnA-UGC gene − 132153 133041 889 Locate
trnI-GAU gene − 133106 134125 1020 Locate
rrn16 gene − 134424 135914 1491 Locate
trnV-GAC gene − 136141 136212 72 Locate
rps12 gene + 137784 138574 791 Locate
rps7 gene + 138628 139095 468 Locate
ndhB gene + 139370 141581 2212 Locate
trnL-CAA gene + 142124 142204 81 Locate
ycf15 gene − 142464 142712 249 Locate
ycf2 gene − 142803 149612 6810 Locate
trnI-CAU gene + 149701 149774 74 Locate
rpl23 gene + 149934 150215 282 Locate
rpl2 gene + 150234 151715 1482 Locate
rps19 gene + 151772 151827 56 Locate
Status Available
Accession MT982397.1
Length 151,827 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources