Scutellaria rubropunctata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059337.1 · 3–76 bp · −
psbA · PQ059337.1 · 346–1,404 bp · −
trnK-UUU · PQ059337.1 · 1,646–4,234 bp · −
matK · PQ059337.1 · 1,941–3,476 bp · −
rps16 · PQ059337.1 · 5,116–6,288 bp · −
trnQ-UUG · PQ059337.1 · 7,292–7,363 bp · −
trnS-GCU · PQ059337.1 · 8,495–8,582 bp · −
atpA · PQ059337.1 · 10,363–11,886 bp · −
atpF · PQ059337.1 · 11,969–13,196 bp · −
atpH · PQ059337.1 · 13,552–13,797 bp · −
atpI · PQ059337.1 · 14,793–15,536 bp · −
rps2 · PQ059337.1 · 15,885–16,595 bp · −
rpoC2 · PQ059337.1 · 16,812–21,017 bp · −
rpoC1 · PQ059337.1 · 21,172–24,002 bp · −
rpoB · PQ059337.1 · 24,029–27,241 bp · −
psbM · PQ059337.1 · 30,281–30,385 bp · −
trnD-GUC · PQ059337.1 · 30,912–30,985 bp · −
trnY-GUA · PQ059337.1 · 31,099–31,182 bp · −
trnE-UUC · PQ059337.1 · 31,242–31,314 bp · −
trnS-UGA · PQ059337.1 · 35,936–36,027 bp · −
trnfM-CAU · PQ059337.1 · 37,022–37,095 bp · −
rps14 · PQ059337.1 · 37,245–37,547 bp · −
psaB · PQ059337.1 · 37,675–39,879 bp · −
psaA · PQ059337.1 · 39,905–42,157 bp · −
ycf3 · PQ059337.1 · 42,794–44,716 bp · −
rps4 · PQ059337.1 · 45,973–46,578 bp · −
trnT-UGU · PQ059337.1 · 46,950–47,022 bp · −
ndhJ · PQ059337.1 · 49,295–49,771 bp · −
ndhK · PQ059337.1 · 49,879–50,556 bp · −
ndhC · PQ059337.1 · 50,609–50,971 bp · −
trnV-UAC · PQ059337.1 · 51,827–52,479 bp · −
atpE · PQ059337.1 · 52,948–53,349 bp · −
atpB · PQ059337.1 · 53,346–54,833 bp · −
psbJ · PQ059337.1 · 64,459–64,581 bp · −
psbL · PQ059337.1 · 64,715–64,936 bp · −
psbF · PQ059337.1 · 64,855–64,974 bp · −
psbE · PQ059337.1 · 64,989–65,240 bp · −
trnW-CCA · PQ059337.1 · 66,652–66,725 bp · −
trnP-UGG · PQ059337.1 · 66,895–66,968 bp · −
rpl20 · PQ059337.1 · 68,767–69,153 bp · −
rps12 · PQ059337.1 · 69,942–70,067 bp · −
rps12 · PQ059337.1 · 97,282–98,072 bp · −
clpP · PQ059337.1 · 70,210–72,141 bp · −
psbN · PQ059337.1 · 74,501–74,632 bp · −
rpoA · PQ059337.1 · 78,002–79,015 bp · −
rps11 · PQ059337.1 · 79,087–79,503 bp · −
rpl36 · PQ059337.1 · 79,605–79,718 bp · −
infA · PQ059337.1 · 79,814–80,047 bp · −
rps8 · PQ059337.1 · 80,167–80,577 bp · −
rpl14 · PQ059337.1 · 80,749–81,117 bp · −
rpl16 · PQ059337.1 · 81,244–82,477 bp · −
rps3 · PQ059337.1 · 82,632–83,294 bp · −
rpl22 · PQ059337.1 · 83,296–83,751 bp · −
rps19 · PQ059337.1 · 83,811–84,089 bp · −
rpl2 · PQ059337.1 · 84,144–85,626 bp · −
rpl23 · PQ059337.1 · 85,645–85,926 bp · −
trnI-CAU · PQ059337.1 · 86,086–86,159 bp · −
trnL-CAA · PQ059337.1 · 93,652–93,732 bp · −
ndhB · PQ059337.1 · 94,275–96,486 bp · −
rps7 · PQ059337.1 · 96,761–97,228 bp · −
trnN-GUU · PQ059337.1 · 108,111–108,182 bp · −
ndhF · PQ059337.1 · 109,259–111,499 bp · −
ndhD · PQ059337.1 · 114,025–115,527 bp · −
psaC · PQ059337.1 · 115,647–115,892 bp · −
ndhE · PQ059337.1 · 116,149–116,454 bp · −
ndhG · PQ059337.1 · 116,685–117,215 bp · −
ndhI · PQ059337.1 · 117,580–118,080 bp · −
ndhA · PQ059337.1 · 118,161–120,252 bp · −
ndhH · PQ059337.1 · 120,254–121,435 bp · −
rps15 · PQ059337.1 · 121,538–121,810 bp · −
ycf1 · PQ059337.1 · 122,077–127,728 bp · −
trnR-ACG · PQ059337.1 · 128,565–128,638 bp · −
rrn5 · PQ059337.1 · 128,873–128,993 bp · −
rrn4.5 · PQ059337.1 · 129,241–129,343 bp · −
rrn23 · PQ059337.1 · 129,442–132,254 bp · −
trnA-UGC · PQ059337.1 · 132,424–133,306 bp · −
trnI-GAU · PQ059337.1 · 133,371–134,391 bp · −
ycf68 · PQ059337.1 · 133,997–134,236 bp · −
rrn16 · PQ059337.1 · 134,690–136,180 bp · −
trnV-GAC · PQ059337.1 · 136,408–136,479 bp · −
ycf15 · PQ059337.1 · 142,733–142,981 bp · −
ycf2 · PQ059337.1 · 143,072–149,881 bp · −
psbK · PQ059337.1 · 7,688–7,873 bp · +
psbI · PQ059337.1 · 8,267–8,377 bp · +
trnG-UCC · PQ059337.1 · 9,264–10,024 bp · +
trnR-UCU · PQ059337.1 · 10,195–10,266 bp · +
trnC-GCA · PQ059337.1 · 28,412–28,482 bp · +
petN · PQ059337.1 · 29,194–29,283 bp · +
trnT-GGU · PQ059337.1 · 31,890–31,961 bp · +
psbD · PQ059337.1 · 33,269–34,330 bp · +
psbC · PQ059337.1 · 34,278–35,699 bp · +
psbZ · PQ059337.1 · 36,347–36,535 bp · +
trnG-GCC · PQ059337.1 · 36,798–36,868 bp · +
trnS-GGA · PQ059337.1 · 45,601–45,687 bp · +
trnL-UAA · PQ059337.1 · 47,706–48,267 bp · +
trnF-GAA · PQ059337.1 · 48,574–48,646 bp · +
trnM-CAU · PQ059337.1 · 52,660–52,732 bp · +
rbcL · PQ059337.1 · 55,590–57,053 bp · +
accD · PQ059337.1 · 57,787–59,253 bp · +
psaI · PQ059337.1 · 59,811–59,921 bp · +
ycf4 · PQ059337.1 · 60,355–60,909 bp · +
cemA · PQ059337.1 · 61,656–62,255 bp · +
petA · PQ059337.1 · 62,462–63,424 bp · +
petL · PQ059337.1 · 66,149–66,244 bp · +
petG · PQ059337.1 · 66,420–66,533 bp · +
psaJ · PQ059337.1 · 67,241–67,375 bp · +
rpl33 · PQ059337.1 · 67,849–68,049 bp · +
rps18 · PQ059337.1 · 68,224–68,529 bp · +
rps12 · PQ059337.1 · 138,057–138,847 bp · +
psbB · PQ059337.1 · 72,608–74,134 bp · +
psbT · PQ059337.1 · 74,326–74,427 bp · +
psbH · PQ059337.1 · 74,736–74,957 bp · +
petB · PQ059337.1 · 75,082–76,449 bp · +
petD · PQ059337.1 · 76,638–77,839 bp · +
ycf2 · PQ059337.1 · 86,248–93,057 bp · +
ycf15 · PQ059337.1 · 93,148–93,396 bp · +
trnV-GAC · PQ059337.1 · 99,650–99,721 bp · +
rrn16 · PQ059337.1 · 99,949–101,439 bp · +
trnI-GAU · PQ059337.1 · 101,738–102,758 bp · +
trnA-UGC · PQ059337.1 · 102,823–103,705 bp · +
rrn23 · PQ059337.1 · 103,875–106,687 bp · +
rrn4.5 · PQ059337.1 · 106,786–106,888 bp · +
rrn5 · PQ059337.1 · 107,136–107,256 bp · +
trnR-ACG · PQ059337.1 · 107,491–107,564 bp · +
rpl32 · PQ059337.1 · 112,021–112,197 bp · +
trnL-UAG · PQ059337.1 · 112,643–112,722 bp · +
ccsA · PQ059337.1 · 112,818–113,792 bp · +
trnN-GUU · PQ059337.1 · 127,947–128,018 bp · +
rps7 · PQ059337.1 · 138,901–139,368 bp · +
ndhB · PQ059337.1 · 139,643–141,854 bp · +
trnL-CAA · PQ059337.1 · 142,397–142,477 bp · +
trnI-CAU · PQ059337.1 · 149,970–150,043 bp · +
rpl23 · PQ059337.1 · 150,203–150,484 bp · +
rpl2 · PQ059337.1 · 150,503–151,985 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria rubropunctata
ANNOTATED PLASTOME
PQ059337.1
152,080 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38020 76040 114060 152080 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 346 1404 1059 Locate
trnK-UUU gene − 1646 4234 2589 Locate
matK gene − 1941 3476 1536 Locate
rps16 gene − 5116 6288 1173 Locate
trnQ-UUG gene − 7292 7363 72 Locate
psbK gene + 7688 7873 186 Locate
psbI gene + 8267 8377 111 Locate
trnS-GCU gene − 8495 8582 88 Locate
trnG-UCC gene + 9264 10024 761 Locate
trnR-UCU gene + 10195 10266 72 Locate
atpA gene − 10363 11886 1524 Locate
atpF gene − 11969 13196 1228 Locate
atpH gene − 13552 13797 246 Locate
atpI gene − 14793 15536 744 Locate
rps2 gene − 15885 16595 711 Locate
rpoC2 gene − 16812 21017 4206 Locate
rpoC1 gene − 21172 24002 2831 Locate
rpoB gene − 24029 27241 3213 Locate
trnC-GCA gene + 28412 28482 71 Locate
petN gene + 29194 29283 90 Locate
psbM gene − 30281 30385 105 Locate
trnD-GUC gene − 30912 30985 74 Locate
trnY-GUA gene − 31099 31182 84 Locate
trnE-UUC gene − 31242 31314 73 Locate
trnT-GGU gene + 31890 31961 72 Locate
psbD gene + 33269 34330 1062 Locate
psbC gene + 34278 35699 1422 Locate
trnS-UGA gene − 35936 36027 92 Locate
psbZ gene + 36347 36535 189 Locate
trnG-GCC gene + 36798 36868 71 Locate
trnfM-CAU gene − 37022 37095 74 Locate
rps14 gene − 37245 37547 303 Locate
psaB gene − 37675 39879 2205 Locate
psaA gene − 39905 42157 2253 Locate
ycf3 gene − 42794 44716 1923 Locate
trnS-GGA gene + 45601 45687 87 Locate
rps4 gene − 45973 46578 606 Locate
trnT-UGU gene − 46950 47022 73 Locate
trnL-UAA gene + 47706 48267 562 Locate
trnF-GAA gene + 48574 48646 73 Locate
ndhJ gene − 49295 49771 477 Locate
ndhK gene − 49879 50556 678 Locate
ndhC gene − 50609 50971 363 Locate
trnV-UAC gene − 51827 52479 653 Locate
trnM-CAU gene + 52660 52732 73 Locate
atpE gene − 52948 53349 402 Locate
atpB gene − 53346 54833 1488 Locate
rbcL gene + 55590 57053 1464 Locate
accD gene + 57787 59253 1467 Locate
psaI gene + 59811 59921 111 Locate
ycf4 gene + 60355 60909 555 Locate
cemA gene + 61656 62255 600 Locate
petA gene + 62462 63424 963 Locate
psbJ gene − 64459 64581 123 Locate
psbL gene − 64715 64936 222 Locate
psbF gene − 64855 64974 120 Locate
psbE gene − 64989 65240 252 Locate
petL gene + 66149 66244 96 Locate
petG gene + 66420 66533 114 Locate
trnW-CCA gene − 66652 66725 74 Locate
trnP-UGG gene − 66895 66968 74 Locate
psaJ gene + 67241 67375 135 Locate
rpl33 gene + 67849 68049 201 Locate
rps18 gene + 68224 68529 306 Locate
rpl20 gene − 68767 69153 387 Locate
rps12 gene − 69942 70067 126 Locate
clpP gene − 70210 72141 1932 Locate
psbB gene + 72608 74134 1527 Locate
psbT gene + 74326 74427 102 Locate
psbN gene − 74501 74632 132 Locate
psbH gene + 74736 74957 222 Locate
petB gene + 75082 76449 1368 Locate
petD gene + 76638 77839 1202 Locate
rpoA gene − 78002 79015 1014 Locate
rps11 gene − 79087 79503 417 Locate
rpl36 gene − 79605 79718 114 Locate
infA gene − 79814 80047 234 Locate
rps8 gene − 80167 80577 411 Locate
rpl14 gene − 80749 81117 369 Locate
rpl16 gene − 81244 82477 1234 Locate
rps3 gene − 82632 83294 663 Locate
rpl22 gene − 83296 83751 456 Locate
rps19 gene − 83811 84089 279 Locate
rpl2 gene − 84144 85626 1483 Locate
rpl23 gene − 85645 85926 282 Locate
trnI-CAU gene − 86086 86159 74 Locate
ycf2 gene + 86248 93057 6810 Locate
ycf15 gene + 93148 93396 249 Locate
trnL-CAA gene − 93652 93732 81 Locate
ndhB gene − 94275 96486 2212 Locate
rps7 gene − 96761 97228 468 Locate
rps12 gene − 97282 98072 791 Locate
trnV-GAC gene + 99650 99721 72 Locate
rrn16 gene + 99949 101439 1491 Locate
trnI-GAU gene + 101738 102758 1021 Locate
trnA-UGC gene + 102823 103705 883 Locate
rrn23 gene + 103875 106687 2813 Locate
rrn4.5 gene + 106786 106888 103 Locate
rrn5 gene + 107136 107256 121 Locate
trnR-ACG gene + 107491 107564 74 Locate
trnN-GUU gene − 108111 108182 72 Locate
ndhF gene − 109259 111499 2241 Locate
rpl32 gene + 112021 112197 177 Locate
trnL-UAG gene + 112643 112722 80 Locate
ccsA gene + 112818 113792 975 Locate
ndhD gene − 114025 115527 1503 Locate
psaC gene − 115647 115892 246 Locate
ndhE gene − 116149 116454 306 Locate
ndhG gene − 116685 117215 531 Locate
ndhI gene − 117580 118080 501 Locate
ndhA gene − 118161 120252 2092 Locate
ndhH gene − 120254 121435 1182 Locate
rps15 gene − 121538 121810 273 Locate
ycf1 gene − 122077 127728 5652 Locate
trnN-GUU gene + 127947 128018 72 Locate
trnR-ACG gene − 128565 128638 74 Locate
rrn5 gene − 128873 128993 121 Locate
rrn4.5 gene − 129241 129343 103 Locate
rrn23 gene − 129442 132254 2813 Locate
trnA-UGC gene − 132424 133306 883 Locate
trnI-GAU gene − 133371 134391 1021 Locate
ycf68 gene − 133997 134236 240 Locate
rrn16 gene − 134690 136180 1491 Locate
trnV-GAC gene − 136408 136479 72 Locate
rps12 gene + 138057 138847 791 Locate
rps7 gene + 138901 139368 468 Locate
ndhB gene + 139643 141854 2212 Locate
trnL-CAA gene + 142397 142477 81 Locate
ycf15 gene − 142733 142981 249 Locate
ycf2 gene − 143072 149881 6810 Locate
trnI-CAU gene + 149970 150043 74 Locate
rpl23 gene + 150203 150484 282 Locate
rpl2 gene + 150503 151985 1483 Locate
Status Available
Accession PQ059337.1
Length 152,080 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources