Scutellaria salviifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059210.1 · 4–77 bp · −
psbA · PQ059210.1 · 380–1,438 bp · −
trnK-UUU · PQ059210.1 · 1,679–4,261 bp · −
matK · PQ059210.1 · 1,969–3,504 bp · −
rps16 · PQ059210.1 · 5,155–6,316 bp · −
trnQ-UUG · PQ059210.1 · 7,429–7,500 bp · −
trnS-GCU · PQ059210.1 · 8,635–8,722 bp · −
atpA · PQ059210.1 · 10,503–12,026 bp · −
atpF · PQ059210.1 · 12,099–13,328 bp · −
atpH · PQ059210.1 · 13,690–13,935 bp · −
atpI · PQ059210.1 · 14,916–15,659 bp · −
rps2 · PQ059210.1 · 16,006–16,716 bp · −
rpoC2 · PQ059210.1 · 16,931–21,136 bp · −
rpoC1 · PQ059210.1 · 21,290–24,131 bp · −
rpoB · PQ059210.1 · 24,158–27,370 bp · −
psbM · PQ059210.1 · 30,404–30,508 bp · −
trnD-GUC · PQ059210.1 · 31,042–31,115 bp · −
trnY-GUA · PQ059210.1 · 31,229–31,312 bp · −
trnE-UUC · PQ059210.1 · 31,372–31,444 bp · −
trnS-UGA · PQ059210.1 · 36,052–36,143 bp · −
trnfM-CAU · PQ059210.1 · 37,125–37,198 bp · −
rps14 · PQ059210.1 · 37,354–37,656 bp · −
psaB · PQ059210.1 · 37,784–39,988 bp · −
psaA · PQ059210.1 · 40,014–42,266 bp · −
ycf3 · PQ059210.1 · 42,962–44,892 bp · −
rps4 · PQ059210.1 · 46,143–46,748 bp · −
trnT-UGU · PQ059210.1 · 47,080–47,152 bp · −
ndhJ · PQ059210.1 · 49,426–49,902 bp · −
ndhK · PQ059210.1 · 50,011–50,688 bp · −
ndhC · PQ059210.1 · 50,741–51,103 bp · −
trnV-UAC · PQ059210.1 · 52,090–52,742 bp · −
atpE · PQ059210.1 · 53,212–53,613 bp · −
atpB · PQ059210.1 · 53,610–55,106 bp · −
psbJ · PQ059210.1 · 64,837–64,959 bp · −
psbL · PQ059210.1 · 65,093–65,209 bp · −
psbF · PQ059210.1 · 65,233–65,352 bp · −
psbE · PQ059210.1 · 65,367–65,618 bp · −
trnW-CCA · PQ059210.1 · 66,985–67,058 bp · −
trnP-UGG · PQ059210.1 · 67,228–67,301 bp · −
rpl20 · PQ059210.1 · 69,169–69,555 bp · −
rps12 · PQ059210.1 · 70,344–70,457 bp · −
rps12 · PQ059210.1 · 97,628–98,418 bp · −
clpP · PQ059210.1 · 70,598–72,529 bp · −
psbN · PQ059210.1 · 74,890–75,021 bp · −
rpoA · PQ059210.1 · 78,593–79,387 bp · −
rps11 · PQ059210.1 · 79,459–79,875 bp · −
rpl36 · PQ059210.1 · 79,977–80,090 bp · −
infA · PQ059210.1 · 80,185–80,418 bp · −
rps8 · PQ059210.1 · 80,541–80,951 bp · −
rpl14 · PQ059210.1 · 81,108–81,476 bp · −
rpl16 · PQ059210.1 · 81,603–82,839 bp · −
rps3 · PQ059210.1 · 83,006–83,668 bp · −
rpl22 · PQ059210.1 · 83,670–84,125 bp · −
rps19 · PQ059210.1 · 84,185–84,463 bp · −
rpl2 · PQ059210.1 · 84,517–85,998 bp · −
rpl23 · PQ059210.1 · 86,017–86,298 bp · −
trnI-CAU · PQ059210.1 · 86,458–86,531 bp · −
trnL-CAA · PQ059210.1 · 93,998–94,078 bp · −
ndhB · PQ059210.1 · 94,621–96,778 bp · −
rps7 · PQ059210.1 · 97,107–97,574 bp · −
trnN-GUU · PQ059210.1 · 108,461–108,532 bp · −
ndhF · PQ059210.1 · 109,609–111,849 bp · −
ndhD · PQ059210.1 · 114,377–115,906 bp · −
psaC · PQ059210.1 · 116,005–116,250 bp · −
ndhE · PQ059210.1 · 116,506–116,811 bp · −
ndhG · PQ059210.1 · 117,033–117,563 bp · −
ndhI · PQ059210.1 · 117,929–118,429 bp · −
ndhA · PQ059210.1 · 118,517–120,626 bp · −
ndhH · PQ059210.1 · 120,628–121,839 bp · −
rps15 · PQ059210.1 · 121,906–122,178 bp · −
ycf1 · PQ059210.1 · 122,376–128,018 bp · −
trnR-ACG · PQ059210.1 · 128,860–128,933 bp · −
rrn5 · PQ059210.1 · 129,168–129,288 bp · −
rrn4.5 · PQ059210.1 · 129,536–129,638 bp · −
rrn23 · PQ059210.1 · 129,737–132,548 bp · −
trnA-UGC · PQ059210.1 · 132,718–133,607 bp · −
trnI-GAU · PQ059210.1 · 133,672–134,692 bp · −
ycf68 · PQ059210.1 · 134,244–134,537 bp · −
rrn16 · PQ059210.1 · 134,991–136,481 bp · −
trnV-GAC · PQ059210.1 · 136,708–136,779 bp · −
ycf15 · PQ059210.1 · 143,031–143,279 bp · −
ycf2 · PQ059210.1 · 143,370–150,149 bp · −
psbK · PQ059210.1 · 7,826–8,011 bp · +
psbI · PQ059210.1 · 8,406–8,516 bp · +
trnG-UCC · PQ059210.1 · 9,403–10,160 bp · +
trnR-UCU · PQ059210.1 · 10,335–10,406 bp · +
trnC-GCA · PQ059210.1 · 28,531–28,601 bp · +
petN · PQ059210.1 · 29,330–29,419 bp · +
trnT-GGU · PQ059210.1 · 32,013–32,084 bp · +
psbD · PQ059210.1 · 33,386–34,447 bp · +
psbC · PQ059210.1 · 34,395–35,816 bp · +
psbZ · PQ059210.1 · 36,451–36,639 bp · +
trnG-GCC · PQ059210.1 · 36,912–36,982 bp · +
trnS-GGA · PQ059210.1 · 45,775–45,861 bp · +
trnL-UAA · PQ059210.1 · 47,837–48,401 bp · +
trnF-GAA · PQ059210.1 · 48,711–48,783 bp · +
trnM-CAU · PQ059210.1 · 52,931–53,003 bp · +
rbcL · PQ059210.1 · 55,857–57,320 bp · +
accD · PQ059210.1 · 58,013–59,491 bp · +
psaI · PQ059210.1 · 60,201–60,311 bp · +
ycf4 · PQ059210.1 · 60,747–61,301 bp · +
cemA · PQ059210.1 · 62,045–62,644 bp · +
petA · PQ059210.1 · 62,851–63,813 bp · +
petL · PQ059210.1 · 66,482–66,577 bp · +
petG · PQ059210.1 · 66,753–66,866 bp · +
psaJ · PQ059210.1 · 67,510–67,707 bp · +
rpl33 · PQ059210.1 · 68,251–68,451 bp · +
rps18 · PQ059210.1 · 68,626–68,931 bp · +
rps12 · PQ059210.1 · 138,351–139,141 bp · +
psbB · PQ059210.1 · 72,996–74,522 bp · +
psbT · PQ059210.1 · 74,715–74,816 bp · +
psbH · PQ059210.1 · 75,125–75,346 bp · +
petB · PQ059210.1 · 75,472–76,839 bp · +
petD · PQ059210.1 · 77,028–78,218 bp · +
ycf2 · PQ059210.1 · 86,620–93,399 bp · +
ycf15 · PQ059210.1 · 93,490–93,738 bp · +
trnV-GAC · PQ059210.1 · 99,990–100,061 bp · +
rrn16 · PQ059210.1 · 100,288–101,778 bp · +
trnI-GAU · PQ059210.1 · 102,077–103,097 bp · +
trnA-UGC · PQ059210.1 · 103,162–104,051 bp · +
rrn23 · PQ059210.1 · 104,221–107,032 bp · +
rrn4.5 · PQ059210.1 · 107,131–107,233 bp · +
rrn5 · PQ059210.1 · 107,481–107,601 bp · +
trnR-ACG · PQ059210.1 · 107,836–107,909 bp · +
rpl32 · PQ059210.1 · 112,363–112,539 bp · +
trnL-UAG · PQ059210.1 · 112,987–113,066 bp · +
ccsA · PQ059210.1 · 113,169–114,143 bp · +
trnN-GUU · PQ059210.1 · 128,237–128,308 bp · +
rps7 · PQ059210.1 · 139,195–139,662 bp · +
ndhB · PQ059210.1 · 139,991–142,148 bp · +
trnL-CAA · PQ059210.1 · 142,691–142,771 bp · +
trnI-CAU · PQ059210.1 · 150,238–150,311 bp · +
rpl23 · PQ059210.1 · 150,471–150,752 bp · +
rpl2 · PQ059210.1 · 150,771–152,252 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria salviifolia
ANNOTATED PLASTOME
PQ059210.1
152,351 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38088 76176 114263 152351 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1679 4261 2583 Locate
matK gene − 1969 3504 1536 Locate
rps16 gene − 5155 6316 1162 Locate
trnQ-UUG gene − 7429 7500 72 Locate
psbK gene + 7826 8011 186 Locate
psbI gene + 8406 8516 111 Locate
trnS-GCU gene − 8635 8722 88 Locate
trnG-UCC gene + 9403 10160 758 Locate
trnR-UCU gene + 10335 10406 72 Locate
atpA gene − 10503 12026 1524 Locate
atpF gene − 12099 13328 1230 Locate
atpH gene − 13690 13935 246 Locate
atpI gene − 14916 15659 744 Locate
rps2 gene − 16006 16716 711 Locate
rpoC2 gene − 16931 21136 4206 Locate
rpoC1 gene − 21290 24131 2842 Locate
rpoB gene − 24158 27370 3213 Locate
trnC-GCA gene + 28531 28601 71 Locate
petN gene + 29330 29419 90 Locate
psbM gene − 30404 30508 105 Locate
trnD-GUC gene − 31042 31115 74 Locate
trnY-GUA gene − 31229 31312 84 Locate
trnE-UUC gene − 31372 31444 73 Locate
trnT-GGU gene + 32013 32084 72 Locate
psbD gene + 33386 34447 1062 Locate
psbC gene + 34395 35816 1422 Locate
trnS-UGA gene − 36052 36143 92 Locate
psbZ gene + 36451 36639 189 Locate
trnG-GCC gene + 36912 36982 71 Locate
trnfM-CAU gene − 37125 37198 74 Locate
rps14 gene − 37354 37656 303 Locate
psaB gene − 37784 39988 2205 Locate
psaA gene − 40014 42266 2253 Locate
ycf3 gene − 42962 44892 1931 Locate
trnS-GGA gene + 45775 45861 87 Locate
rps4 gene − 46143 46748 606 Locate
trnT-UGU gene − 47080 47152 73 Locate
trnL-UAA gene + 47837 48401 565 Locate
trnF-GAA gene + 48711 48783 73 Locate
ndhJ gene − 49426 49902 477 Locate
ndhK gene − 50011 50688 678 Locate
ndhC gene − 50741 51103 363 Locate
trnV-UAC gene − 52090 52742 653 Locate
trnM-CAU gene + 52931 53003 73 Locate
atpE gene − 53212 53613 402 Locate
atpB gene − 53610 55106 1497 Locate
rbcL gene + 55857 57320 1464 Locate
accD gene + 58013 59491 1479 Locate
psaI gene + 60201 60311 111 Locate
ycf4 gene + 60747 61301 555 Locate
cemA gene + 62045 62644 600 Locate
petA gene + 62851 63813 963 Locate
psbJ gene − 64837 64959 123 Locate
psbL gene − 65093 65209 117 Locate
psbF gene − 65233 65352 120 Locate
psbE gene − 65367 65618 252 Locate
petL gene + 66482 66577 96 Locate
petG gene + 66753 66866 114 Locate
trnW-CCA gene − 66985 67058 74 Locate
trnP-UGG gene − 67228 67301 74 Locate
psaJ gene + 67510 67707 198 Locate
rpl33 gene + 68251 68451 201 Locate
rps18 gene + 68626 68931 306 Locate
rpl20 gene − 69169 69555 387 Locate
rps12 gene − 70344 70457 114 Locate
clpP gene − 70598 72529 1932 Locate
psbB gene + 72996 74522 1527 Locate
psbT gene + 74715 74816 102 Locate
psbN gene − 74890 75021 132 Locate
psbH gene + 75125 75346 222 Locate
petB gene + 75472 76839 1368 Locate
petD gene + 77028 78218 1191 Locate
rpoA gene − 78593 79387 795 Locate
rps11 gene − 79459 79875 417 Locate
rpl36 gene − 79977 80090 114 Locate
infA gene − 80185 80418 234 Locate
rps8 gene − 80541 80951 411 Locate
rpl14 gene − 81108 81476 369 Locate
rpl16 gene − 81603 82839 1237 Locate
rps3 gene − 83006 83668 663 Locate
rpl22 gene − 83670 84125 456 Locate
rps19 gene − 84185 84463 279 Locate
rpl2 gene − 84517 85998 1482 Locate
rpl23 gene − 86017 86298 282 Locate
trnI-CAU gene − 86458 86531 74 Locate
ycf2 gene + 86620 93399 6780 Locate
ycf15 gene + 93490 93738 249 Locate
trnL-CAA gene − 93998 94078 81 Locate
ndhB gene − 94621 96778 2158 Locate
rps7 gene − 97107 97574 468 Locate
rps12 gene − 97628 98418 791 Locate
trnV-GAC gene + 99990 100061 72 Locate
rrn16 gene + 100288 101778 1491 Locate
trnI-GAU gene + 102077 103097 1021 Locate
trnA-UGC gene + 103162 104051 890 Locate
rrn23 gene + 104221 107032 2812 Locate
rrn4.5 gene + 107131 107233 103 Locate
rrn5 gene + 107481 107601 121 Locate
trnR-ACG gene + 107836 107909 74 Locate
trnN-GUU gene − 108461 108532 72 Locate
ndhF gene − 109609 111849 2241 Locate
rpl32 gene + 112363 112539 177 Locate
trnL-UAG gene + 112987 113066 80 Locate
ccsA gene + 113169 114143 975 Locate
ndhD gene − 114377 115906 1530 Locate
psaC gene − 116005 116250 246 Locate
ndhE gene − 116506 116811 306 Locate
ndhG gene − 117033 117563 531 Locate
ndhI gene − 117929 118429 501 Locate
ndhA gene − 118517 120626 2110 Locate
ndhH gene − 120628 121839 1212 Locate
rps15 gene − 121906 122178 273 Locate
ycf1 gene − 122376 128018 5643 Locate
trnN-GUU gene + 128237 128308 72 Locate
trnR-ACG gene − 128860 128933 74 Locate
rrn5 gene − 129168 129288 121 Locate
rrn4.5 gene − 129536 129638 103 Locate
rrn23 gene − 129737 132548 2812 Locate
trnA-UGC gene − 132718 133607 890 Locate
trnI-GAU gene − 133672 134692 1021 Locate
ycf68 gene − 134244 134537 294 Locate
rrn16 gene − 134991 136481 1491 Locate
trnV-GAC gene − 136708 136779 72 Locate
rps12 gene + 138351 139141 791 Locate
rps7 gene + 139195 139662 468 Locate
ndhB gene + 139991 142148 2158 Locate
trnL-CAA gene + 142691 142771 81 Locate
ycf15 gene − 143031 143279 249 Locate
ycf2 gene − 143370 150149 6780 Locate
trnI-CAU gene + 150238 150311 74 Locate
rpl23 gene + 150471 150752 282 Locate
rpl2 gene + 150771 152252 1482 Locate
Status Available
Accession PQ059210.1
Length 152,351 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources