Scutellaria scandens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059338.1 · 3–76 bp · −
psbA · PQ059338.1 · 370–1,428 bp · −
trnK-UUU · PQ059338.1 · 1,661–4,248 bp · −
matK · PQ059338.1 · 1,956–3,491 bp · −
rps16 · PQ059338.1 · 5,159–6,327 bp · −
trnQ-UUG · PQ059338.1 · 7,447–7,518 bp · −
trnS-GCU · PQ059338.1 · 8,628–8,715 bp · −
atpA · PQ059338.1 · 10,509–12,032 bp · −
atpF · PQ059338.1 · 12,106–13,333 bp · −
atpH · PQ059338.1 · 13,751–13,996 bp · −
atpI · PQ059338.1 · 14,987–15,730 bp · −
rps2 · PQ059338.1 · 16,079–16,915 bp · −
rpoC2 · PQ059338.1 · 17,006–21,211 bp · −
rpoC1 · PQ059338.1 · 21,364–24,200 bp · −
rpoB · PQ059338.1 · 24,227–27,439 bp · −
psbM · PQ059338.1 · 30,553–30,666 bp · −
trnD-GUC · PQ059338.1 · 31,193–31,266 bp · −
trnY-GUA · PQ059338.1 · 31,380–31,463 bp · −
trnE-UUC · PQ059338.1 · 31,523–31,595 bp · −
trnS-UGA · PQ059338.1 · 36,229–36,320 bp · −
trnfM-CAU · PQ059338.1 · 37,323–37,396 bp · −
rps14 · PQ059338.1 · 37,546–37,848 bp · −
psaB · PQ059338.1 · 37,976–40,180 bp · −
psaA · PQ059338.1 · 40,206–42,458 bp · −
ycf3 · PQ059338.1 · 43,162–45,061 bp · −
rps4 · PQ059338.1 · 46,326–46,931 bp · −
trnT-UGU · PQ059338.1 · 47,274–47,346 bp · −
ndhJ · PQ059338.1 · 49,629–50,105 bp · −
ndhK · PQ059338.1 · 50,213–50,890 bp · −
ndhC · PQ059338.1 · 50,943–51,305 bp · −
trnV-UAC · PQ059338.1 · 52,296–52,948 bp · −
atpE · PQ059338.1 · 53,411–53,812 bp · −
atpB · PQ059338.1 · 53,809–55,296 bp · −
psbJ · PQ059338.1 · 65,041–65,163 bp · −
psbL · PQ059338.1 · 65,297–65,518 bp · −
psbF · PQ059338.1 · 65,437–65,556 bp · −
psbE · PQ059338.1 · 65,571–65,822 bp · −
trnW-CCA · PQ059338.1 · 67,236–67,309 bp · −
trnP-UGG · PQ059338.1 · 67,471–67,544 bp · −
rpl20 · PQ059338.1 · 69,327–69,713 bp · −
rps12 · PQ059338.1 · 70,502–70,627 bp · −
rps12 · PQ059338.1 · 97,874–98,664 bp · −
clpP · PQ059338.1 · 70,770–72,710 bp · −
psbN · PQ059338.1 · 75,077–75,208 bp · −
rpoA · PQ059338.1 · 78,576–79,595 bp · −
rps11 · PQ059338.1 · 79,667–80,083 bp · −
rpl36 · PQ059338.1 · 80,185–80,298 bp · −
infA · PQ059338.1 · 80,394–80,627 bp · −
rps8 · PQ059338.1 · 80,747–81,157 bp · −
rpl14 · PQ059338.1 · 81,331–81,699 bp · −
rpl16 · PQ059338.1 · 81,826–83,069 bp · −
rps3 · PQ059338.1 · 83,224–83,886 bp · −
rpl22 · PQ059338.1 · 83,888–84,343 bp · −
rps19 · PQ059338.1 · 84,403–84,681 bp · −
rpl2 · PQ059338.1 · 84,736–86,218 bp · −
rpl23 · PQ059338.1 · 86,237–86,518 bp · −
trnI-CAU · PQ059338.1 · 86,678–86,751 bp · −
trnL-CAA · PQ059338.1 · 94,244–94,324 bp · −
ndhB · PQ059338.1 · 94,867–97,024 bp · −
rps7 · PQ059338.1 · 97,353–97,820 bp · −
trnN-GUU · PQ059338.1 · 108,697–108,768 bp · −
ndhF · PQ059338.1 · 109,845–112,085 bp · −
ndhD · PQ059338.1 · 114,584–116,107 bp · −
psaC · PQ059338.1 · 116,206–116,451 bp · −
ndhE · PQ059338.1 · 116,708–117,013 bp · −
ndhG · PQ059338.1 · 117,234–117,764 bp · −
ndhI · PQ059338.1 · 118,122–118,622 bp · −
ndhA · PQ059338.1 · 118,704–120,805 bp · −
ndhH · PQ059338.1 · 120,807–121,988 bp · −
rps15 · PQ059338.1 · 122,091–122,363 bp · −
ycf1 · PQ059338.1 · 122,624–128,278 bp · −
trnR-ACG · PQ059338.1 · 129,115–129,188 bp · −
rrn5 · PQ059338.1 · 129,412–129,532 bp · −
rrn4.5 · PQ059338.1 · 129,780–129,882 bp · −
rrn23 · PQ059338.1 · 129,981–132,793 bp · −
trnA-UGC · PQ059338.1 · 132,963–133,850 bp · −
trnI-GAU · PQ059338.1 · 133,915–134,935 bp · −
ycf68 · PQ059338.1 · 134,541–134,780 bp · −
rrn16 · PQ059338.1 · 135,234–136,724 bp · −
trnV-GAC · PQ059338.1 · 136,952–137,023 bp · −
ycf15 · PQ059338.1 · 143,277–143,525 bp · −
ycf2 · PQ059338.1 · 143,616–150,425 bp · −
psbK · PQ059338.1 · 7,848–8,033 bp · +
psbI · PQ059338.1 · 8,401–8,511 bp · +
trnG-UCC · PQ059338.1 · 9,405–10,166 bp · +
trnR-UCU · PQ059338.1 · 10,341–10,412 bp · +
trnC-GCA · PQ059338.1 · 28,608–28,678 bp · +
petN · PQ059338.1 · 29,381–29,470 bp · +
trnT-GGU · PQ059338.1 · 32,178–32,249 bp · +
psbD · PQ059338.1 · 33,555–34,616 bp · +
psbC · PQ059338.1 · 34,564–35,985 bp · +
psbZ · PQ059338.1 · 36,640–36,828 bp · +
trnG-GCC · PQ059338.1 · 37,100–37,170 bp · +
trnS-GGA · PQ059338.1 · 45,947–46,033 bp · +
trnL-UAA · PQ059338.1 · 48,030–48,598 bp · +
trnF-GAA · PQ059338.1 · 48,904–48,976 bp · +
trnM-CAU · PQ059338.1 · 53,129–53,201 bp · +
rbcL · PQ059338.1 · 56,047–57,510 bp · +
accD · PQ059338.1 · 58,232–59,698 bp · +
psaI · PQ059338.1 · 60,415–60,525 bp · +
ycf4 · PQ059338.1 · 60,959–61,513 bp · +
cemA · PQ059338.1 · 62,255–62,854 bp · +
petA · PQ059338.1 · 63,068–64,030 bp · +
petL · PQ059338.1 · 66,733–66,828 bp · +
petG · PQ059338.1 · 67,004–67,117 bp · +
psaJ · PQ059338.1 · 67,801–67,935 bp · +
rpl33 · PQ059338.1 · 68,408–68,608 bp · +
rps18 · PQ059338.1 · 68,783–69,088 bp · +
rps12 · PQ059338.1 · 138,601–139,391 bp · +
psbB · PQ059338.1 · 73,184–74,710 bp · +
psbT · PQ059338.1 · 74,902–75,003 bp · +
psbH · PQ059338.1 · 75,312–75,533 bp · +
petB · PQ059338.1 · 75,658–77,028 bp · +
petD · PQ059338.1 · 77,217–78,418 bp · +
ycf2 · PQ059338.1 · 86,840–93,649 bp · +
ycf15 · PQ059338.1 · 93,740–93,988 bp · +
trnV-GAC · PQ059338.1 · 100,242–100,313 bp · +
rrn16 · PQ059338.1 · 100,541–102,031 bp · +
trnI-GAU · PQ059338.1 · 102,330–103,350 bp · +
trnA-UGC · PQ059338.1 · 103,415–104,302 bp · +
rrn23 · PQ059338.1 · 104,472–107,284 bp · +
rrn4.5 · PQ059338.1 · 107,383–107,485 bp · +
rrn5 · PQ059338.1 · 107,733–107,853 bp · +
trnR-ACG · PQ059338.1 · 108,077–108,150 bp · +
rpl32 · PQ059338.1 · 112,608–112,784 bp · +
trnL-UAG · PQ059338.1 · 113,197–113,276 bp · +
ccsA · PQ059338.1 · 113,375–114,349 bp · +
trnN-GUU · PQ059338.1 · 128,497–128,568 bp · +
rps7 · PQ059338.1 · 139,445–139,912 bp · +
ndhB · PQ059338.1 · 140,241–142,398 bp · +
trnL-CAA · PQ059338.1 · 142,941–143,021 bp · +
trnI-CAU · PQ059338.1 · 150,514–150,587 bp · +
rpl23 · PQ059338.1 · 150,747–151,028 bp · +
rpl2 · PQ059338.1 · 151,047–152,529 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria scandens
ANNOTATED PLASTOME
PQ059338.1
152,624 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38156 76312 114468 152624 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1661 4248 2588 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5159 6327 1169 Locate
trnQ-UUG gene − 7447 7518 72 Locate
psbK gene + 7848 8033 186 Locate
psbI gene + 8401 8511 111 Locate
trnS-GCU gene − 8628 8715 88 Locate
trnG-UCC gene + 9405 10166 762 Locate
trnR-UCU gene + 10341 10412 72 Locate
atpA gene − 10509 12032 1524 Locate
atpF gene − 12106 13333 1228 Locate
atpH gene − 13751 13996 246 Locate
atpI gene − 14987 15730 744 Locate
rps2 gene − 16079 16915 837 Locate
rpoC2 gene − 17006 21211 4206 Locate
rpoC1 gene − 21364 24200 2837 Locate
rpoB gene − 24227 27439 3213 Locate
trnC-GCA gene + 28608 28678 71 Locate
petN gene + 29381 29470 90 Locate
psbM gene − 30553 30666 114 Locate
trnD-GUC gene − 31193 31266 74 Locate
trnY-GUA gene − 31380 31463 84 Locate
trnE-UUC gene − 31523 31595 73 Locate
trnT-GGU gene + 32178 32249 72 Locate
psbD gene + 33555 34616 1062 Locate
psbC gene + 34564 35985 1422 Locate
trnS-UGA gene − 36229 36320 92 Locate
psbZ gene + 36640 36828 189 Locate
trnG-GCC gene + 37100 37170 71 Locate
trnfM-CAU gene − 37323 37396 74 Locate
rps14 gene − 37546 37848 303 Locate
psaB gene − 37976 40180 2205 Locate
psaA gene − 40206 42458 2253 Locate
ycf3 gene − 43162 45061 1900 Locate
trnS-GGA gene + 45947 46033 87 Locate
rps4 gene − 46326 46931 606 Locate
trnT-UGU gene − 47274 47346 73 Locate
trnL-UAA gene + 48030 48598 569 Locate
trnF-GAA gene + 48904 48976 73 Locate
ndhJ gene − 49629 50105 477 Locate
ndhK gene − 50213 50890 678 Locate
ndhC gene − 50943 51305 363 Locate
trnV-UAC gene − 52296 52948 653 Locate
trnM-CAU gene + 53129 53201 73 Locate
atpE gene − 53411 53812 402 Locate
atpB gene − 53809 55296 1488 Locate
rbcL gene + 56047 57510 1464 Locate
accD gene + 58232 59698 1467 Locate
psaI gene + 60415 60525 111 Locate
ycf4 gene + 60959 61513 555 Locate
cemA gene + 62255 62854 600 Locate
petA gene + 63068 64030 963 Locate
psbJ gene − 65041 65163 123 Locate
psbL gene − 65297 65518 222 Locate
psbF gene − 65437 65556 120 Locate
psbE gene − 65571 65822 252 Locate
petL gene + 66733 66828 96 Locate
petG gene + 67004 67117 114 Locate
trnW-CCA gene − 67236 67309 74 Locate
trnP-UGG gene − 67471 67544 74 Locate
psaJ gene + 67801 67935 135 Locate
rpl33 gene + 68408 68608 201 Locate
rps18 gene + 68783 69088 306 Locate
rpl20 gene − 69327 69713 387 Locate
rps12 gene − 70502 70627 126 Locate
clpP gene − 70770 72710 1941 Locate
psbB gene + 73184 74710 1527 Locate
psbT gene + 74902 75003 102 Locate
psbN gene − 75077 75208 132 Locate
psbH gene + 75312 75533 222 Locate
petB gene + 75658 77028 1371 Locate
petD gene + 77217 78418 1202 Locate
rpoA gene − 78576 79595 1020 Locate
rps11 gene − 79667 80083 417 Locate
rpl36 gene − 80185 80298 114 Locate
infA gene − 80394 80627 234 Locate
rps8 gene − 80747 81157 411 Locate
rpl14 gene − 81331 81699 369 Locate
rpl16 gene − 81826 83069 1244 Locate
rps3 gene − 83224 83886 663 Locate
rpl22 gene − 83888 84343 456 Locate
rps19 gene − 84403 84681 279 Locate
rpl2 gene − 84736 86218 1483 Locate
rpl23 gene − 86237 86518 282 Locate
trnI-CAU gene − 86678 86751 74 Locate
ycf2 gene + 86840 93649 6810 Locate
ycf15 gene + 93740 93988 249 Locate
trnL-CAA gene − 94244 94324 81 Locate
ndhB gene − 94867 97024 2158 Locate
rps7 gene − 97353 97820 468 Locate
rps12 gene − 97874 98664 791 Locate
trnV-GAC gene + 100242 100313 72 Locate
rrn16 gene + 100541 102031 1491 Locate
trnI-GAU gene + 102330 103350 1021 Locate
trnA-UGC gene + 103415 104302 888 Locate
rrn23 gene + 104472 107284 2813 Locate
rrn4.5 gene + 107383 107485 103 Locate
rrn5 gene + 107733 107853 121 Locate
trnR-ACG gene + 108077 108150 74 Locate
trnN-GUU gene − 108697 108768 72 Locate
ndhF gene − 109845 112085 2241 Locate
rpl32 gene + 112608 112784 177 Locate
trnL-UAG gene + 113197 113276 80 Locate
ccsA gene + 113375 114349 975 Locate
ndhD gene − 114584 116107 1524 Locate
psaC gene − 116206 116451 246 Locate
ndhE gene − 116708 117013 306 Locate
ndhG gene − 117234 117764 531 Locate
ndhI gene − 118122 118622 501 Locate
ndhA gene − 118704 120805 2102 Locate
ndhH gene − 120807 121988 1182 Locate
rps15 gene − 122091 122363 273 Locate
ycf1 gene − 122624 128278 5655 Locate
trnN-GUU gene + 128497 128568 72 Locate
trnR-ACG gene − 129115 129188 74 Locate
rrn5 gene − 129412 129532 121 Locate
rrn4.5 gene − 129780 129882 103 Locate
rrn23 gene − 129981 132793 2813 Locate
trnA-UGC gene − 132963 133850 888 Locate
trnI-GAU gene − 133915 134935 1021 Locate
ycf68 gene − 134541 134780 240 Locate
rrn16 gene − 135234 136724 1491 Locate
trnV-GAC gene − 136952 137023 72 Locate
rps12 gene + 138601 139391 791 Locate
rps7 gene + 139445 139912 468 Locate
ndhB gene + 140241 142398 2158 Locate
trnL-CAA gene + 142941 143021 81 Locate
ycf15 gene − 143277 143525 249 Locate
ycf2 gene − 143616 150425 6810 Locate
trnI-CAU gene + 150514 150587 74 Locate
rpl23 gene + 150747 151028 282 Locate
rpl2 gene + 151047 152529 1483 Locate
Status Available
Accession PQ059338.1
Length 152,624 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources