Scutellaria schweinfurthii subsp. paucifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058255.1 · 3–76 bp · −
psbA · PQ058255.1 · 374–1,432 bp · −
trnK-UUU · PQ058255.1 · 1,673–4,271 bp · −
matK · PQ058255.1 · 1,968–3,512 bp · −
rps16 · PQ058255.1 · 5,192–6,358 bp · −
trnQ-UUG · PQ058255.1 · 7,466–7,537 bp · −
trnS-GCU · PQ058255.1 · 8,675–8,762 bp · −
atpA · PQ058255.1 · 10,577–12,100 bp · −
atpF · PQ058255.1 · 12,183–13,412 bp · −
atpH · PQ058255.1 · 13,774–14,019 bp · −
atpI · PQ058255.1 · 15,006–15,749 bp · −
rps2 · PQ058255.1 · 16,097–16,807 bp · −
rpoC2 · PQ058255.1 · 17,032–21,231 bp · −
rpoC1 · PQ058255.1 · 21,386–24,224 bp · −
rpoB · PQ058255.1 · 24,251–27,463 bp · −
psbM · PQ058255.1 · 30,558–30,662 bp · −
trnD-GUC · PQ058255.1 · 31,189–31,262 bp · −
trnY-GUA · PQ058255.1 · 31,376–31,459 bp · −
trnE-UUC · PQ058255.1 · 31,519–31,591 bp · −
trnS-UGA · PQ058255.1 · 36,238–36,329 bp · −
trnfM-CAU · PQ058255.1 · 37,317–37,390 bp · −
rps14 · PQ058255.1 · 37,545–37,847 bp · −
psaB · PQ058255.1 · 37,975–40,179 bp · −
psaA · PQ058255.1 · 40,206–42,458 bp · −
ycf3 · PQ058255.1 · 43,172–45,091 bp · −
rps4 · PQ058255.1 · 46,263–46,868 bp · −
trnT-UGU · PQ058255.1 · 47,218–47,290 bp · −
ndhJ · PQ058255.1 · 49,586–50,062 bp · −
ndhK · PQ058255.1 · 50,171–50,848 bp · −
ndhC · PQ058255.1 · 50,901–51,263 bp · −
trnV-UAC · PQ058255.1 · 52,246–52,898 bp · −
atpE · PQ058255.1 · 53,368–53,769 bp · −
atpB · PQ058255.1 · 53,766–55,262 bp · −
psbJ · PQ058255.1 · 64,977–65,099 bp · −
psbL · PQ058255.1 · 65,233–65,349 bp · −
psbF · PQ058255.1 · 65,373–65,492 bp · −
psbE · PQ058255.1 · 65,507–65,758 bp · −
trnW-CCA · PQ058255.1 · 67,134–67,207 bp · −
trnP-UGG · PQ058255.1 · 67,377–67,450 bp · −
rpl20 · PQ058255.1 · 69,253–69,639 bp · −
rps12 · PQ058255.1 · 70,434–70,547 bp · −
rps12 · PQ058255.1 · 97,666–98,456 bp · −
clpP · PQ058255.1 · 70,689–72,629 bp · −
psbN · PQ058255.1 · 74,973–75,104 bp · −
rpoA · PQ058255.1 · 78,461–79,468 bp · −
rps11 · PQ058255.1 · 79,540–79,956 bp · −
rpl36 · PQ058255.1 · 80,058–80,171 bp · −
infA · PQ058255.1 · 80,267–80,500 bp · −
rps8 · PQ058255.1 · 80,620–81,030 bp · −
rpl14 · PQ058255.1 · 81,195–81,563 bp · −
rpl16 · PQ058255.1 · 81,691–82,907 bp · −
rps3 · PQ058255.1 · 83,013–83,675 bp · −
rpl22 · PQ058255.1 · 83,677–84,132 bp · −
rps19 · PQ058255.1 · 84,192–84,470 bp · −
rpl2 · PQ058255.1 · 84,525–86,007 bp · −
rpl23 · PQ058255.1 · 86,026–86,307 bp · −
trnI-CAU · PQ058255.1 · 86,467–86,540 bp · −
trnL-CAA · PQ058255.1 · 94,037–94,117 bp · −
ndhB · PQ058255.1 · 94,659–96,870 bp · −
rps7 · PQ058255.1 · 97,145–97,612 bp · −
trnN-GUU · PQ058255.1 · 108,490–108,561 bp · −
ndhF · PQ058255.1 · 109,638–111,878 bp · −
ndhD · PQ058255.1 · 114,407–115,909 bp · −
psaC · PQ058255.1 · 116,035–116,280 bp · −
ndhE · PQ058255.1 · 116,536–116,841 bp · −
ndhG · PQ058255.1 · 117,073–117,603 bp · −
ndhI · PQ058255.1 · 117,961–118,461 bp · −
ndhA · PQ058255.1 · 118,542–120,634 bp · −
ndhH · PQ058255.1 · 120,636–121,817 bp · −
rps15 · PQ058255.1 · 121,914–122,246 bp · −
ycf1 · PQ058255.1 · 122,459–128,110 bp · −
trnR-ACG · PQ058255.1 · 128,957–129,030 bp · −
rrn5 · PQ058255.1 · 129,265–129,385 bp · −
rrn4.5 · PQ058255.1 · 129,633–129,735 bp · −
rrn23 · PQ058255.1 · 129,834–132,645 bp · −
trnA-UGC · PQ058255.1 · 132,815–133,700 bp · −
trnI-GAU · PQ058255.1 · 133,765–134,784 bp · −
ycf68 · PQ058255.1 · 134,336–134,629 bp · −
rrn16 · PQ058255.1 · 135,083–136,573 bp · −
trnV-GAC · PQ058255.1 · 136,800–136,871 bp · −
ycf15 · PQ058255.1 · 143,113–143,310 bp · −
ycf2 · PQ058255.1 · 143,452–150,261 bp · −
psbK · PQ058255.1 · 7,862–8,047 bp · +
psbI · PQ058255.1 · 8,446–8,556 bp · +
trnG-UCC · PQ058255.1 · 9,483–10,234 bp · +
trnR-UCU · PQ058255.1 · 10,409–10,480 bp · +
trnC-GCA · PQ058255.1 · 28,646–28,716 bp · +
petN · PQ058255.1 · 29,447–29,536 bp · +
trnT-GGU · PQ058255.1 · 32,167–32,238 bp · +
psbD · PQ058255.1 · 33,558–34,619 bp · +
psbC · PQ058255.1 · 34,567–35,988 bp · +
psbZ · PQ058255.1 · 36,645–36,833 bp · +
trnG-GCC · PQ058255.1 · 37,106–37,176 bp · +
trnS-GGA · PQ058255.1 · 45,891–45,977 bp · +
trnL-UAA · PQ058255.1 · 47,984–48,552 bp · +
trnF-GAA · PQ058255.1 · 48,861–48,933 bp · +
trnM-CAU · PQ058255.1 · 53,087–53,159 bp · +
rbcL · PQ058255.1 · 56,011–57,471 bp · +
accD · PQ058255.1 · 58,186–59,664 bp · +
psaI · PQ058255.1 · 60,376–60,486 bp · +
ycf4 · PQ058255.1 · 60,919–61,473 bp · +
cemA · PQ058255.1 · 62,214–62,813 bp · +
petA · PQ058255.1 · 63,018–63,980 bp · +
petL · PQ058255.1 · 66,630–66,725 bp · +
petG · PQ058255.1 · 66,902–67,015 bp · +
psaJ · PQ058255.1 · 67,723–67,857 bp · +
rpl33 · PQ058255.1 · 68,338–68,538 bp · +
rps18 · PQ058255.1 · 68,713–69,018 bp · +
rps12 · PQ058255.1 · 138,434–139,224 bp · +
psbB · PQ058255.1 · 73,093–74,619 bp · +
psbT · PQ058255.1 · 74,805–74,912 bp · +
psbH · PQ058255.1 · 75,208–75,429 bp · +
petB · PQ058255.1 · 75,554–76,912 bp · +
petD · PQ058255.1 · 77,101–78,298 bp · +
ycf2 · PQ058255.1 · 86,629–93,438 bp · +
ycf15 · PQ058255.1 · 93,580–93,777 bp · +
trnV-GAC · PQ058255.1 · 100,019–100,090 bp · +
rrn16 · PQ058255.1 · 100,317–101,807 bp · +
trnI-GAU · PQ058255.1 · 102,106–103,125 bp · +
trnA-UGC · PQ058255.1 · 103,190–104,075 bp · +
rrn23 · PQ058255.1 · 104,245–107,056 bp · +
rrn4.5 · PQ058255.1 · 107,155–107,257 bp · +
rrn5 · PQ058255.1 · 107,505–107,625 bp · +
trnR-ACG · PQ058255.1 · 107,860–107,933 bp · +
rpl32 · PQ058255.1 · 112,394–112,570 bp · +
trnL-UAG · PQ058255.1 · 113,014–113,093 bp · +
ccsA · PQ058255.1 · 113,193–114,167 bp · +
trnN-GUU · PQ058255.1 · 128,329–128,400 bp · +
rps7 · PQ058255.1 · 139,278–139,745 bp · +
ndhB · PQ058255.1 · 140,020–142,231 bp · +
trnL-CAA · PQ058255.1 · 142,773–142,853 bp · +
trnI-CAU · PQ058255.1 · 150,350–150,423 bp · +
rpl23 · PQ058255.1 · 150,583–150,864 bp · +
rpl2 · PQ058255.1 · 150,883–152,365 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria schweinfurthii subsp. paucifolia
ANNOTATED PLASTOME
PQ058255.1
152,460 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38115 76230 114345 152460 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1673 4271 2599 Locate
matK gene − 1968 3512 1545 Locate
rps16 gene − 5192 6358 1167 Locate
trnQ-UUG gene − 7466 7537 72 Locate
psbK gene + 7862 8047 186 Locate
psbI gene + 8446 8556 111 Locate
trnS-GCU gene − 8675 8762 88 Locate
trnG-UCC gene + 9483 10234 752 Locate
trnR-UCU gene + 10409 10480 72 Locate
atpA gene − 10577 12100 1524 Locate
atpF gene − 12183 13412 1230 Locate
atpH gene − 13774 14019 246 Locate
atpI gene − 15006 15749 744 Locate
rps2 gene − 16097 16807 711 Locate
rpoC2 gene − 17032 21231 4200 Locate
rpoC1 gene − 21386 24224 2839 Locate
rpoB gene − 24251 27463 3213 Locate
trnC-GCA gene + 28646 28716 71 Locate
petN gene + 29447 29536 90 Locate
psbM gene − 30558 30662 105 Locate
trnD-GUC gene − 31189 31262 74 Locate
trnY-GUA gene − 31376 31459 84 Locate
trnE-UUC gene − 31519 31591 73 Locate
trnT-GGU gene + 32167 32238 72 Locate
psbD gene + 33558 34619 1062 Locate
psbC gene + 34567 35988 1422 Locate
trnS-UGA gene − 36238 36329 92 Locate
psbZ gene + 36645 36833 189 Locate
trnG-GCC gene + 37106 37176 71 Locate
trnfM-CAU gene − 37317 37390 74 Locate
rps14 gene − 37545 37847 303 Locate
psaB gene − 37975 40179 2205 Locate
psaA gene − 40206 42458 2253 Locate
ycf3 gene − 43172 45091 1920 Locate
trnS-GGA gene + 45891 45977 87 Locate
rps4 gene − 46263 46868 606 Locate
trnT-UGU gene − 47218 47290 73 Locate
trnL-UAA gene + 47984 48552 569 Locate
trnF-GAA gene + 48861 48933 73 Locate
ndhJ gene − 49586 50062 477 Locate
ndhK gene − 50171 50848 678 Locate
ndhC gene − 50901 51263 363 Locate
trnV-UAC gene − 52246 52898 653 Locate
trnM-CAU gene + 53087 53159 73 Locate
atpE gene − 53368 53769 402 Locate
atpB gene − 53766 55262 1497 Locate
rbcL gene + 56011 57471 1461 Locate
accD gene + 58186 59664 1479 Locate
psaI gene + 60376 60486 111 Locate
ycf4 gene + 60919 61473 555 Locate
cemA gene + 62214 62813 600 Locate
petA gene + 63018 63980 963 Locate
psbJ gene − 64977 65099 123 Locate
psbL gene − 65233 65349 117 Locate
psbF gene − 65373 65492 120 Locate
psbE gene − 65507 65758 252 Locate
petL gene + 66630 66725 96 Locate
petG gene + 66902 67015 114 Locate
trnW-CCA gene − 67134 67207 74 Locate
trnP-UGG gene − 67377 67450 74 Locate
psaJ gene + 67723 67857 135 Locate
rpl33 gene + 68338 68538 201 Locate
rps18 gene + 68713 69018 306 Locate
rpl20 gene − 69253 69639 387 Locate
rps12 gene − 70434 70547 114 Locate
clpP gene − 70689 72629 1941 Locate
psbB gene + 73093 74619 1527 Locate
psbT gene + 74805 74912 108 Locate
psbN gene − 74973 75104 132 Locate
psbH gene + 75208 75429 222 Locate
petB gene + 75554 76912 1359 Locate
petD gene + 77101 78298 1198 Locate
rpoA gene − 78461 79468 1008 Locate
rps11 gene − 79540 79956 417 Locate
rpl36 gene − 80058 80171 114 Locate
infA gene − 80267 80500 234 Locate
rps8 gene − 80620 81030 411 Locate
rpl14 gene − 81195 81563 369 Locate
rpl16 gene − 81691 82907 1217 Locate
rps3 gene − 83013 83675 663 Locate
rpl22 gene − 83677 84132 456 Locate
rps19 gene − 84192 84470 279 Locate
rpl2 gene − 84525 86007 1483 Locate
rpl23 gene − 86026 86307 282 Locate
trnI-CAU gene − 86467 86540 74 Locate
ycf2 gene + 86629 93438 6810 Locate
ycf15 gene + 93580 93777 198 Locate
trnL-CAA gene − 94037 94117 81 Locate
ndhB gene − 94659 96870 2212 Locate
rps7 gene − 97145 97612 468 Locate
rps12 gene − 97666 98456 791 Locate
trnV-GAC gene + 100019 100090 72 Locate
rrn16 gene + 100317 101807 1491 Locate
trnI-GAU gene + 102106 103125 1020 Locate
trnA-UGC gene + 103190 104075 886 Locate
rrn23 gene + 104245 107056 2812 Locate
rrn4.5 gene + 107155 107257 103 Locate
rrn5 gene + 107505 107625 121 Locate
trnR-ACG gene + 107860 107933 74 Locate
trnN-GUU gene − 108490 108561 72 Locate
ndhF gene − 109638 111878 2241 Locate
rpl32 gene + 112394 112570 177 Locate
trnL-UAG gene + 113014 113093 80 Locate
ccsA gene + 113193 114167 975 Locate
ndhD gene − 114407 115909 1503 Locate
psaC gene − 116035 116280 246 Locate
ndhE gene − 116536 116841 306 Locate
ndhG gene − 117073 117603 531 Locate
ndhI gene − 117961 118461 501 Locate
ndhA gene − 118542 120634 2093 Locate
ndhH gene − 120636 121817 1182 Locate
rps15 gene − 121914 122246 333 Locate
ycf1 gene − 122459 128110 5652 Locate
trnN-GUU gene + 128329 128400 72 Locate
trnR-ACG gene − 128957 129030 74 Locate
rrn5 gene − 129265 129385 121 Locate
rrn4.5 gene − 129633 129735 103 Locate
rrn23 gene − 129834 132645 2812 Locate
trnA-UGC gene − 132815 133700 886 Locate
trnI-GAU gene − 133765 134784 1020 Locate
ycf68 gene − 134336 134629 294 Locate
rrn16 gene − 135083 136573 1491 Locate
trnV-GAC gene − 136800 136871 72 Locate
rps12 gene + 138434 139224 791 Locate
rps7 gene + 139278 139745 468 Locate
ndhB gene + 140020 142231 2212 Locate
trnL-CAA gene + 142773 142853 81 Locate
ycf15 gene − 143113 143310 198 Locate
ycf2 gene − 143452 150261 6810 Locate
trnI-CAU gene + 150350 150423 74 Locate
rpl23 gene + 150583 150864 282 Locate
rpl2 gene + 150883 152365 1483 Locate
Status Available
Accession PQ058255.1
Length 152,460 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources