Scutellaria schweinfurthii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058254.1 · 3–76 bp · −
psbA · PQ058254.1 · 373–1,431 bp · −
trnK-UUU · PQ058254.1 · 1,672–4,270 bp · −
matK · PQ058254.1 · 1,967–3,511 bp · −
rps16 · PQ058254.1 · 5,190–6,356 bp · −
trnQ-UUG · PQ058254.1 · 7,465–7,536 bp · −
trnS-GCU · PQ058254.1 · 8,675–8,762 bp · −
atpA · PQ058254.1 · 10,577–12,100 bp · −
atpF · PQ058254.1 · 12,183–13,412 bp · −
atpH · PQ058254.1 · 13,774–14,019 bp · −
atpI · PQ058254.1 · 15,006–15,749 bp · −
rps2 · PQ058254.1 · 16,097–16,942 bp · −
rpoC2 · PQ058254.1 · 17,037–21,227 bp · −
rpoC1 · PQ058254.1 · 21,382–24,225 bp · −
rpoB · PQ058254.1 · 24,252–27,464 bp · −
psbM · PQ058254.1 · 30,558–30,662 bp · −
trnD-GUC · PQ058254.1 · 31,189–31,262 bp · −
trnY-GUA · PQ058254.1 · 31,376–31,459 bp · −
trnE-UUC · PQ058254.1 · 31,519–31,591 bp · −
trnS-UGA · PQ058254.1 · 36,239–36,330 bp · −
trnfM-CAU · PQ058254.1 · 37,318–37,391 bp · −
rps14 · PQ058254.1 · 37,546–37,848 bp · −
psaB · PQ058254.1 · 37,976–40,180 bp · −
psaA · PQ058254.1 · 40,207–42,459 bp · −
ycf3 · PQ058254.1 · 43,168–45,086 bp · −
rps4 · PQ058254.1 · 46,258–46,863 bp · −
trnT-UGU · PQ058254.1 · 47,212–47,284 bp · −
ndhJ · PQ058254.1 · 49,577–50,053 bp · −
ndhK · PQ058254.1 · 50,162–50,839 bp · −
ndhC · PQ058254.1 · 50,892–51,254 bp · −
trnV-UAC · PQ058254.1 · 52,237–52,889 bp · −
atpE · PQ058254.1 · 53,359–53,760 bp · −
atpB · PQ058254.1 · 53,757–55,253 bp · −
psbJ · PQ058254.1 · 64,988–65,110 bp · −
psbL · PQ058254.1 · 65,244–65,465 bp · −
psbF · PQ058254.1 · 65,384–65,503 bp · −
psbE · PQ058254.1 · 65,518–65,769 bp · −
trnW-CCA · PQ058254.1 · 67,145–67,218 bp · −
trnP-UGG · PQ058254.1 · 67,388–67,461 bp · −
rpl20 · PQ058254.1 · 69,265–69,651 bp · −
rps12 · PQ058254.1 · 70,434–70,559 bp · −
rps12 · PQ058254.1 · 97,679–98,469 bp · −
clpP · PQ058254.1 · 70,701–72,641 bp · −
psbN · PQ058254.1 · 74,985–75,116 bp · −
rpoA · PQ058254.1 · 78,474–79,481 bp · −
rps11 · PQ058254.1 · 79,553–79,969 bp · −
rpl36 · PQ058254.1 · 80,071–80,184 bp · −
infA · PQ058254.1 · 80,280–80,513 bp · −
rps8 · PQ058254.1 · 80,633–81,043 bp · −
rpl14 · PQ058254.1 · 81,208–81,576 bp · −
rpl16 · PQ058254.1 · 81,704–82,920 bp · −
rps3 · PQ058254.1 · 83,026–83,688 bp · −
rpl22 · PQ058254.1 · 83,690–84,145 bp · −
rps19 · PQ058254.1 · 84,205–84,483 bp · −
rpl2 · PQ058254.1 · 84,538–86,020 bp · −
rpl23 · PQ058254.1 · 86,039–86,320 bp · −
trnI-CAU · PQ058254.1 · 86,480–86,553 bp · −
trnL-CAA · PQ058254.1 · 94,050–94,130 bp · −
ndhB · PQ058254.1 · 94,672–96,829 bp · −
rps7 · PQ058254.1 · 97,158–97,625 bp · −
trnN-GUU · PQ058254.1 · 108,519–108,590 bp · −
ndhF · PQ058254.1 · 109,667–111,907 bp · −
ndhD · PQ058254.1 · 114,437–115,939 bp · −
psaC · PQ058254.1 · 116,065–116,310 bp · −
ndhE · PQ058254.1 · 116,566–116,871 bp · −
ndhG · PQ058254.1 · 117,103–117,633 bp · −
ndhI · PQ058254.1 · 117,991–118,491 bp · −
ndhA · PQ058254.1 · 118,572–120,662 bp · −
ndhH · PQ058254.1 · 120,664–121,845 bp · −
rps15 · PQ058254.1 · 121,942–122,214 bp · −
ycf1 · PQ058254.1 · 122,487–128,138 bp · −
trnR-ACG · PQ058254.1 · 128,985–129,058 bp · −
rrn5 · PQ058254.1 · 129,293–129,413 bp · −
rrn4.5 · PQ058254.1 · 129,661–129,763 bp · −
rrn23 · PQ058254.1 · 129,862–132,673 bp · −
trnA-UGC · PQ058254.1 · 132,859–133,744 bp · −
trnI-GAU · PQ058254.1 · 133,809–134,828 bp · −
ycf68 · PQ058254.1 · 134,380–134,673 bp · −
rrn16 · PQ058254.1 · 135,127–136,617 bp · −
trnV-GAC · PQ058254.1 · 136,844–136,915 bp · −
ycf15 · PQ058254.1 · 143,157–143,405 bp · −
ycf2 · PQ058254.1 · 143,496–150,305 bp · −
psbK · PQ058254.1 · 7,861–8,046 bp · +
psbI · PQ058254.1 · 8,445–8,555 bp · +
trnG-UCC · PQ058254.1 · 9,483–10,234 bp · +
trnR-UCU · PQ058254.1 · 10,409–10,480 bp · +
trnC-GCA · PQ058254.1 · 28,647–28,717 bp · +
petN · PQ058254.1 · 29,447–29,536 bp · +
trnT-GGU · PQ058254.1 · 32,167–32,238 bp · +
psbD · PQ058254.1 · 33,560–34,621 bp · +
psbC · PQ058254.1 · 34,569–35,990 bp · +
psbZ · PQ058254.1 · 36,646–36,834 bp · +
trnG-GCC · PQ058254.1 · 37,107–37,177 bp · +
trnS-GGA · PQ058254.1 · 45,886–45,972 bp · +
trnL-UAA · PQ058254.1 · 47,974–48,542 bp · +
trnF-GAA · PQ058254.1 · 48,851–48,923 bp · +
trnM-CAU · PQ058254.1 · 53,078–53,150 bp · +
rbcL · PQ058254.1 · 56,002–57,462 bp · +
accD · PQ058254.1 · 58,177–59,655 bp · +
psaI · PQ058254.1 · 60,367–60,477 bp · +
ycf4 · PQ058254.1 · 60,931–61,485 bp · +
cemA · PQ058254.1 · 62,226–62,825 bp · +
petA · PQ058254.1 · 63,030–63,992 bp · +
petL · PQ058254.1 · 66,641–66,736 bp · +
petG · PQ058254.1 · 66,913–67,026 bp · +
psaJ · PQ058254.1 · 67,734–67,868 bp · +
rpl33 · PQ058254.1 · 68,350–68,550 bp · +
rps18 · PQ058254.1 · 68,725–69,030 bp · +
rps12 · PQ058254.1 · 138,478–139,268 bp · +
psbB · PQ058254.1 · 73,105–74,631 bp · +
psbT · PQ058254.1 · 74,817–74,924 bp · +
psbH · PQ058254.1 · 75,220–75,441 bp · +
petB · PQ058254.1 · 75,566–76,925 bp · +
petD · PQ058254.1 · 77,114–78,311 bp · +
ycf2 · PQ058254.1 · 86,642–93,451 bp · +
ycf15 · PQ058254.1 · 93,542–93,790 bp · +
trnV-GAC · PQ058254.1 · 100,032–100,103 bp · +
rrn16 · PQ058254.1 · 100,330–101,820 bp · +
trnI-GAU · PQ058254.1 · 102,119–103,138 bp · +
trnA-UGC · PQ058254.1 · 103,203–104,088 bp · +
rrn23 · PQ058254.1 · 104,274–107,085 bp · +
rrn4.5 · PQ058254.1 · 107,184–107,286 bp · +
rrn5 · PQ058254.1 · 107,534–107,654 bp · +
trnR-ACG · PQ058254.1 · 107,889–107,962 bp · +
rpl32 · PQ058254.1 · 112,424–112,600 bp · +
trnL-UAG · PQ058254.1 · 113,044–113,123 bp · +
ccsA · PQ058254.1 · 113,223–114,197 bp · +
trnN-GUU · PQ058254.1 · 128,357–128,428 bp · +
rps7 · PQ058254.1 · 139,322–139,789 bp · +
ndhB · PQ058254.1 · 140,118–142,275 bp · +
trnL-CAA · PQ058254.1 · 142,817–142,897 bp · +
trnI-CAU · PQ058254.1 · 150,394–150,467 bp · +
rpl23 · PQ058254.1 · 150,627–150,908 bp · +
rpl2 · PQ058254.1 · 150,927–152,409 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria schweinfurthii
ANNOTATED PLASTOME
PQ058254.1
152,504 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38126 76252 114378 152504 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1672 4270 2599 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5190 6356 1167 Locate
trnQ-UUG gene − 7465 7536 72 Locate
psbK gene + 7861 8046 186 Locate
psbI gene + 8445 8555 111 Locate
trnS-GCU gene − 8675 8762 88 Locate
trnG-UCC gene + 9483 10234 752 Locate
trnR-UCU gene + 10409 10480 72 Locate
atpA gene − 10577 12100 1524 Locate
atpF gene − 12183 13412 1230 Locate
atpH gene − 13774 14019 246 Locate
atpI gene − 15006 15749 744 Locate
rps2 gene − 16097 16942 846 Locate
rpoC2 gene − 17037 21227 4191 Locate
rpoC1 gene − 21382 24225 2844 Locate
rpoB gene − 24252 27464 3213 Locate
trnC-GCA gene + 28647 28717 71 Locate
petN gene + 29447 29536 90 Locate
psbM gene − 30558 30662 105 Locate
trnD-GUC gene − 31189 31262 74 Locate
trnY-GUA gene − 31376 31459 84 Locate
trnE-UUC gene − 31519 31591 73 Locate
trnT-GGU gene + 32167 32238 72 Locate
psbD gene + 33560 34621 1062 Locate
psbC gene + 34569 35990 1422 Locate
trnS-UGA gene − 36239 36330 92 Locate
psbZ gene + 36646 36834 189 Locate
trnG-GCC gene + 37107 37177 71 Locate
trnfM-CAU gene − 37318 37391 74 Locate
rps14 gene − 37546 37848 303 Locate
psaB gene − 37976 40180 2205 Locate
psaA gene − 40207 42459 2253 Locate
ycf3 gene − 43168 45086 1919 Locate
trnS-GGA gene + 45886 45972 87 Locate
rps4 gene − 46258 46863 606 Locate
trnT-UGU gene − 47212 47284 73 Locate
trnL-UAA gene + 47974 48542 569 Locate
trnF-GAA gene + 48851 48923 73 Locate
ndhJ gene − 49577 50053 477 Locate
ndhK gene − 50162 50839 678 Locate
ndhC gene − 50892 51254 363 Locate
trnV-UAC gene − 52237 52889 653 Locate
trnM-CAU gene + 53078 53150 73 Locate
atpE gene − 53359 53760 402 Locate
atpB gene − 53757 55253 1497 Locate
rbcL gene + 56002 57462 1461 Locate
accD gene + 58177 59655 1479 Locate
psaI gene + 60367 60477 111 Locate
ycf4 gene + 60931 61485 555 Locate
cemA gene + 62226 62825 600 Locate
petA gene + 63030 63992 963 Locate
psbJ gene − 64988 65110 123 Locate
psbL gene − 65244 65465 222 Locate
psbF gene − 65384 65503 120 Locate
psbE gene − 65518 65769 252 Locate
petL gene + 66641 66736 96 Locate
petG gene + 66913 67026 114 Locate
trnW-CCA gene − 67145 67218 74 Locate
trnP-UGG gene − 67388 67461 74 Locate
psaJ gene + 67734 67868 135 Locate
rpl33 gene + 68350 68550 201 Locate
rps18 gene + 68725 69030 306 Locate
rpl20 gene − 69265 69651 387 Locate
rps12 gene − 70434 70559 126 Locate
clpP gene − 70701 72641 1941 Locate
psbB gene + 73105 74631 1527 Locate
psbT gene + 74817 74924 108 Locate
psbN gene − 74985 75116 132 Locate
psbH gene + 75220 75441 222 Locate
petB gene + 75566 76925 1360 Locate
petD gene + 77114 78311 1198 Locate
rpoA gene − 78474 79481 1008 Locate
rps11 gene − 79553 79969 417 Locate
rpl36 gene − 80071 80184 114 Locate
infA gene − 80280 80513 234 Locate
rps8 gene − 80633 81043 411 Locate
rpl14 gene − 81208 81576 369 Locate
rpl16 gene − 81704 82920 1217 Locate
rps3 gene − 83026 83688 663 Locate
rpl22 gene − 83690 84145 456 Locate
rps19 gene − 84205 84483 279 Locate
rpl2 gene − 84538 86020 1483 Locate
rpl23 gene − 86039 86320 282 Locate
trnI-CAU gene − 86480 86553 74 Locate
ycf2 gene + 86642 93451 6810 Locate
ycf15 gene + 93542 93790 249 Locate
trnL-CAA gene − 94050 94130 81 Locate
ndhB gene − 94672 96829 2158 Locate
rps7 gene − 97158 97625 468 Locate
rps12 gene − 97679 98469 791 Locate
trnV-GAC gene + 100032 100103 72 Locate
rrn16 gene + 100330 101820 1491 Locate
trnI-GAU gene + 102119 103138 1020 Locate
trnA-UGC gene + 103203 104088 886 Locate
rrn23 gene + 104274 107085 2812 Locate
rrn4.5 gene + 107184 107286 103 Locate
rrn5 gene + 107534 107654 121 Locate
trnR-ACG gene + 107889 107962 74 Locate
trnN-GUU gene − 108519 108590 72 Locate
ndhF gene − 109667 111907 2241 Locate
rpl32 gene + 112424 112600 177 Locate
trnL-UAG gene + 113044 113123 80 Locate
ccsA gene + 113223 114197 975 Locate
ndhD gene − 114437 115939 1503 Locate
psaC gene − 116065 116310 246 Locate
ndhE gene − 116566 116871 306 Locate
ndhG gene − 117103 117633 531 Locate
ndhI gene − 117991 118491 501 Locate
ndhA gene − 118572 120662 2091 Locate
ndhH gene − 120664 121845 1182 Locate
rps15 gene − 121942 122214 273 Locate
ycf1 gene − 122487 128138 5652 Locate
trnN-GUU gene + 128357 128428 72 Locate
trnR-ACG gene − 128985 129058 74 Locate
rrn5 gene − 129293 129413 121 Locate
rrn4.5 gene − 129661 129763 103 Locate
rrn23 gene − 129862 132673 2812 Locate
trnA-UGC gene − 132859 133744 886 Locate
trnI-GAU gene − 133809 134828 1020 Locate
ycf68 gene − 134380 134673 294 Locate
rrn16 gene − 135127 136617 1491 Locate
trnV-GAC gene − 136844 136915 72 Locate
rps12 gene + 138478 139268 791 Locate
rps7 gene + 139322 139789 468 Locate
ndhB gene + 140118 142275 2158 Locate
trnL-CAA gene + 142817 142897 81 Locate
ycf15 gene − 143157 143405 249 Locate
ycf2 gene − 143496 150305 6810 Locate
trnI-CAU gene + 150394 150467 74 Locate
rpl23 gene + 150627 150908 282 Locate
rpl2 gene + 150927 152409 1483 Locate
Status Available
Accession PQ058254.1
Length 152,504 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources