Scutellaria scordiifolia var. ammophila chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059339.1 · 3–76 bp · −
psbA · PQ059339.1 · 380–1,438 bp · −
trnK-UUU · PQ059339.1 · 1,671–4,258 bp · −
matK · PQ059339.1 · 1,966–3,501 bp · −
rps16 · PQ059339.1 · 5,162–6,330 bp · −
trnQ-UUG · PQ059339.1 · 7,461–7,532 bp · −
trnS-GCU · PQ059339.1 · 8,663–8,750 bp · −
atpA · PQ059339.1 · 10,555–12,078 bp · −
atpF · PQ059339.1 · 12,152–13,379 bp · −
atpH · PQ059339.1 · 13,746–13,991 bp · −
atpI · PQ059339.1 · 14,988–15,731 bp · −
rps2 · PQ059339.1 · 16,080–16,790 bp · −
rpoC2 · PQ059339.1 · 17,006–21,211 bp · −
rpoC1 · PQ059339.1 · 21,366–24,202 bp · −
rpoB · PQ059339.1 · 24,229–27,441 bp · −
psbM · PQ059339.1 · 30,503–30,607 bp · −
trnD-GUC · PQ059339.1 · 31,133–31,206 bp · −
trnY-GUA · PQ059339.1 · 31,320–31,403 bp · −
trnE-UUC · PQ059339.1 · 31,463–31,535 bp · −
trnS-UGA · PQ059339.1 · 36,160–36,251 bp · −
trnfM-CAU · PQ059339.1 · 37,247–37,320 bp · −
rps14 · PQ059339.1 · 37,470–37,772 bp · −
psaB · PQ059339.1 · 37,900–40,104 bp · −
psaA · PQ059339.1 · 40,130–42,382 bp · −
ycf3 · PQ059339.1 · 43,059–44,981 bp · −
rps4 · PQ059339.1 · 46,248–46,853 bp · −
trnT-UGU · PQ059339.1 · 47,192–47,264 bp · −
ndhJ · PQ059339.1 · 49,546–50,022 bp · −
ndhK · PQ059339.1 · 50,130–50,807 bp · −
ndhC · PQ059339.1 · 50,860–51,222 bp · −
trnV-UAC · PQ059339.1 · 52,219–52,871 bp · −
atpE · PQ059339.1 · 53,334–53,735 bp · −
atpB · PQ059339.1 · 53,732–55,219 bp · −
psbJ · PQ059339.1 · 64,975–65,097 bp · −
psbL · PQ059339.1 · 65,231–65,347 bp · −
psbF · PQ059339.1 · 65,371–65,490 bp · −
psbE · PQ059339.1 · 65,505–65,756 bp · −
trnW-CCA · PQ059339.1 · 67,166–67,239 bp · −
trnP-UGG · PQ059339.1 · 67,409–67,482 bp · −
rpl20 · PQ059339.1 · 69,278–69,664 bp · −
rps12 · PQ059339.1 · 70,452–70,577 bp · −
rps12 · PQ059339.1 · 97,780–98,570 bp · −
clpP · PQ059339.1 · 70,720–72,654 bp · −
psbN · PQ059339.1 · 75,022–75,153 bp · −
rpoA · PQ059339.1 · 78,521–79,534 bp · −
rps11 · PQ059339.1 · 79,606–80,022 bp · −
rpl36 · PQ059339.1 · 80,124–80,237 bp · −
infA · PQ059339.1 · 80,333–80,566 bp · −
rps8 · PQ059339.1 · 80,686–81,096 bp · −
rpl14 · PQ059339.1 · 81,255–81,623 bp · −
rpl16 · PQ059339.1 · 81,750–82,975 bp · −
rps3 · PQ059339.1 · 83,130–83,792 bp · −
rpl22 · PQ059339.1 · 83,794–84,249 bp · −
rps19 · PQ059339.1 · 84,309–84,587 bp · −
rpl2 · PQ059339.1 · 84,642–86,124 bp · −
rpl23 · PQ059339.1 · 86,143–86,424 bp · −
trnI-CAU · PQ059339.1 · 86,584–86,657 bp · −
trnL-CAA · PQ059339.1 · 94,150–94,230 bp · −
ndhB · PQ059339.1 · 94,773–96,930 bp · −
rps7 · PQ059339.1 · 97,259–97,726 bp · −
trnN-GUU · PQ059339.1 · 108,611–108,682 bp · −
ndhF · PQ059339.1 · 109,752–111,992 bp · −
ndhD · PQ059339.1 · 114,515–116,038 bp · −
psaC · PQ059339.1 · 116,137–116,382 bp · −
ndhE · PQ059339.1 · 116,644–116,949 bp · −
ndhG · PQ059339.1 · 117,170–117,700 bp · −
ndhI · PQ059339.1 · 118,064–118,564 bp · −
ndhA · PQ059339.1 · 118,645–120,744 bp · −
ndhH · PQ059339.1 · 120,746–121,927 bp · −
rps15 · PQ059339.1 · 122,030–122,362 bp · −
ycf1 · PQ059339.1 · 122,573–128,326 bp · −
trnR-ACG · PQ059339.1 · 129,057–129,130 bp · −
rrn5 · PQ059339.1 · 129,365–129,485 bp · −
rrn4.5 · PQ059339.1 · 129,733–129,835 bp · −
rrn23 · PQ059339.1 · 129,934–132,746 bp · −
trnA-UGC · PQ059339.1 · 132,916–133,800 bp · −
trnI-GAU · PQ059339.1 · 133,865–134,885 bp · −
ycf68 · PQ059339.1 · 134,491–134,730 bp · −
rrn16 · PQ059339.1 · 135,184–136,674 bp · −
trnV-GAC · PQ059339.1 · 136,902–136,973 bp · −
ycf15 · PQ059339.1 · 143,227–143,475 bp · −
ycf2 · PQ059339.1 · 143,566–150,375 bp · −
psbK · PQ059339.1 · 7,857–8,042 bp · +
psbI · PQ059339.1 · 8,433–8,543 bp · +
trnG-UCC · PQ059339.1 · 9,438–10,197 bp · +
trnR-UCU · PQ059339.1 · 10,387–10,458 bp · +
trnC-GCA · PQ059339.1 · 28,605–28,675 bp · +
petN · PQ059339.1 · 29,386–29,475 bp · +
trnT-GGU · PQ059339.1 · 32,118–32,189 bp · +
psbD · PQ059339.1 · 33,486–34,547 bp · +
psbC · PQ059339.1 · 34,495–35,916 bp · +
psbZ · PQ059339.1 · 36,571–36,759 bp · +
trnG-GCC · PQ059339.1 · 37,031–37,101 bp · +
trnS-GGA · PQ059339.1 · 45,876–45,962 bp · +
trnL-UAA · PQ059339.1 · 47,950–48,518 bp · +
trnF-GAA · PQ059339.1 · 48,825–48,897 bp · +
trnM-CAU · PQ059339.1 · 53,052–53,124 bp · +
rbcL · PQ059339.1 · 55,971–57,434 bp · +
accD · PQ059339.1 · 58,145–59,611 bp · +
psaI · PQ059339.1 · 60,342–60,452 bp · +
ycf4 · PQ059339.1 · 60,886–61,440 bp · +
cemA · PQ059339.1 · 62,189–62,788 bp · +
petA · PQ059339.1 · 62,995–63,957 bp · +
petL · PQ059339.1 · 66,664–66,759 bp · +
petG · PQ059339.1 · 66,934–67,047 bp · +
psaJ · PQ059339.1 · 67,754–67,888 bp · +
rpl33 · PQ059339.1 · 68,360–68,560 bp · +
rps18 · PQ059339.1 · 68,735–69,040 bp · +
rps12 · PQ059339.1 · 138,551–139,341 bp · +
psbB · PQ059339.1 · 73,129–74,655 bp · +
psbT · PQ059339.1 · 74,847–74,948 bp · +
psbH · PQ059339.1 · 75,257–75,478 bp · +
petB · PQ059339.1 · 75,603–76,968 bp · +
petD · PQ059339.1 · 77,157–78,358 bp · +
ycf2 · PQ059339.1 · 86,746–93,555 bp · +
ycf15 · PQ059339.1 · 93,646–93,894 bp · +
trnV-GAC · PQ059339.1 · 100,148–100,219 bp · +
rrn16 · PQ059339.1 · 100,447–101,937 bp · +
trnI-GAU · PQ059339.1 · 102,236–103,256 bp · +
trnA-UGC · PQ059339.1 · 103,321–104,205 bp · +
rrn23 · PQ059339.1 · 104,375–107,187 bp · +
rrn4.5 · PQ059339.1 · 107,286–107,388 bp · +
rrn5 · PQ059339.1 · 107,636–107,756 bp · +
trnR-ACG · PQ059339.1 · 107,991–108,064 bp · +
rpl32 · PQ059339.1 · 112,509–112,685 bp · +
trnL-UAG · PQ059339.1 · 113,132–113,211 bp · +
ccsA · PQ059339.1 · 113,308–114,282 bp · +
trnN-GUU · PQ059339.1 · 128,439–128,510 bp · +
rps7 · PQ059339.1 · 139,395–139,862 bp · +
ndhB · PQ059339.1 · 140,191–142,348 bp · +
trnL-CAA · PQ059339.1 · 142,891–142,971 bp · +
trnI-CAU · PQ059339.1 · 150,464–150,537 bp · +
rpl23 · PQ059339.1 · 150,697–150,978 bp · +
rpl2 · PQ059339.1 · 150,997–152,479 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria scordiifolia var. ammophila
ANNOTATED PLASTOME
PQ059339.1
152,574 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38144 76287 114430 152574 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5162 6330 1169 Locate
trnQ-UUG gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8433 8543 111 Locate
trnS-GCU gene − 8663 8750 88 Locate
trnG-UCC gene + 9438 10197 760 Locate
trnR-UCU gene + 10387 10458 72 Locate
atpA gene − 10555 12078 1524 Locate
atpF gene − 12152 13379 1228 Locate
atpH gene − 13746 13991 246 Locate
atpI gene − 14988 15731 744 Locate
rps2 gene − 16080 16790 711 Locate
rpoC2 gene − 17006 21211 4206 Locate
rpoC1 gene − 21366 24202 2837 Locate
rpoB gene − 24229 27441 3213 Locate
trnC-GCA gene + 28605 28675 71 Locate
petN gene + 29386 29475 90 Locate
psbM gene − 30503 30607 105 Locate
trnD-GUC gene − 31133 31206 74 Locate
trnY-GUA gene − 31320 31403 84 Locate
trnE-UUC gene − 31463 31535 73 Locate
trnT-GGU gene + 32118 32189 72 Locate
psbD gene + 33486 34547 1062 Locate
psbC gene + 34495 35916 1422 Locate
trnS-UGA gene − 36160 36251 92 Locate
psbZ gene + 36571 36759 189 Locate
trnG-GCC gene + 37031 37101 71 Locate
trnfM-CAU gene − 37247 37320 74 Locate
rps14 gene − 37470 37772 303 Locate
psaB gene − 37900 40104 2205 Locate
psaA gene − 40130 42382 2253 Locate
ycf3 gene − 43059 44981 1923 Locate
trnS-GGA gene + 45876 45962 87 Locate
rps4 gene − 46248 46853 606 Locate
trnT-UGU gene − 47192 47264 73 Locate
trnL-UAA gene + 47950 48518 569 Locate
trnF-GAA gene + 48825 48897 73 Locate
ndhJ gene − 49546 50022 477 Locate
ndhK gene − 50130 50807 678 Locate
ndhC gene − 50860 51222 363 Locate
trnV-UAC gene − 52219 52871 653 Locate
trnM-CAU gene + 53052 53124 73 Locate
atpE gene − 53334 53735 402 Locate
atpB gene − 53732 55219 1488 Locate
rbcL gene + 55971 57434 1464 Locate
accD gene + 58145 59611 1467 Locate
psaI gene + 60342 60452 111 Locate
ycf4 gene + 60886 61440 555 Locate
cemA gene + 62189 62788 600 Locate
petA gene + 62995 63957 963 Locate
psbJ gene − 64975 65097 123 Locate
psbL gene − 65231 65347 117 Locate
psbF gene − 65371 65490 120 Locate
psbE gene − 65505 65756 252 Locate
petL gene + 66664 66759 96 Locate
petG gene + 66934 67047 114 Locate
trnW-CCA gene − 67166 67239 74 Locate
trnP-UGG gene − 67409 67482 74 Locate
psaJ gene + 67754 67888 135 Locate
rpl33 gene + 68360 68560 201 Locate
rps18 gene + 68735 69040 306 Locate
rpl20 gene − 69278 69664 387 Locate
rps12 gene − 70452 70577 126 Locate
clpP gene − 70720 72654 1935 Locate
psbB gene + 73129 74655 1527 Locate
psbT gene + 74847 74948 102 Locate
psbN gene − 75022 75153 132 Locate
psbH gene + 75257 75478 222 Locate
petB gene + 75603 76968 1366 Locate
petD gene + 77157 78358 1202 Locate
rpoA gene − 78521 79534 1014 Locate
rps11 gene − 79606 80022 417 Locate
rpl36 gene − 80124 80237 114 Locate
infA gene − 80333 80566 234 Locate
rps8 gene − 80686 81096 411 Locate
rpl14 gene − 81255 81623 369 Locate
rpl16 gene − 81750 82975 1226 Locate
rps3 gene − 83130 83792 663 Locate
rpl22 gene − 83794 84249 456 Locate
rps19 gene − 84309 84587 279 Locate
rpl2 gene − 84642 86124 1483 Locate
rpl23 gene − 86143 86424 282 Locate
trnI-CAU gene − 86584 86657 74 Locate
ycf2 gene + 86746 93555 6810 Locate
ycf15 gene + 93646 93894 249 Locate
trnL-CAA gene − 94150 94230 81 Locate
ndhB gene − 94773 96930 2158 Locate
rps7 gene − 97259 97726 468 Locate
rps12 gene − 97780 98570 791 Locate
trnV-GAC gene + 100148 100219 72 Locate
rrn16 gene + 100447 101937 1491 Locate
trnI-GAU gene + 102236 103256 1021 Locate
trnA-UGC gene + 103321 104205 885 Locate
rrn23 gene + 104375 107187 2813 Locate
rrn4.5 gene + 107286 107388 103 Locate
rrn5 gene + 107636 107756 121 Locate
trnR-ACG gene + 107991 108064 74 Locate
trnN-GUU gene − 108611 108682 72 Locate
ndhF gene − 109752 111992 2241 Locate
rpl32 gene + 112509 112685 177 Locate
trnL-UAG gene + 113132 113211 80 Locate
ccsA gene + 113308 114282 975 Locate
ndhD gene − 114515 116038 1524 Locate
psaC gene − 116137 116382 246 Locate
ndhE gene − 116644 116949 306 Locate
ndhG gene − 117170 117700 531 Locate
ndhI gene − 118064 118564 501 Locate
ndhA gene − 118645 120744 2100 Locate
ndhH gene − 120746 121927 1182 Locate
rps15 gene − 122030 122362 333 Locate
ycf1 gene − 122573 128326 5754 Locate
trnN-GUU gene + 128439 128510 72 Locate
trnR-ACG gene − 129057 129130 74 Locate
rrn5 gene − 129365 129485 121 Locate
rrn4.5 gene − 129733 129835 103 Locate
rrn23 gene − 129934 132746 2813 Locate
trnA-UGC gene − 132916 133800 885 Locate
trnI-GAU gene − 133865 134885 1021 Locate
ycf68 gene − 134491 134730 240 Locate
rrn16 gene − 135184 136674 1491 Locate
trnV-GAC gene − 136902 136973 72 Locate
rps12 gene + 138551 139341 791 Locate
rps7 gene + 139395 139862 468 Locate
ndhB gene + 140191 142348 2158 Locate
trnL-CAA gene + 142891 142971 81 Locate
ycf15 gene − 143227 143475 249 Locate
ycf2 gene − 143566 150375 6810 Locate
trnI-CAU gene + 150464 150537 74 Locate
rpl23 gene + 150697 150978 282 Locate
rpl2 gene + 150997 152479 1483 Locate
Status Available
Accession PQ059339.1
Length 152,574 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources