Scutellaria scutellarioides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420961.1 · 1–74 bp · −
psbA · MW420961.1 · 268–1,326 bp · −
trnK-UUU · MW420961.1 · 1,563–4,144 bp · −
matK · MW420961.1 · 1,854–3,392 bp · −
rps16 · MW420961.1 · 5,036–6,209 bp · −
trnQ-UUC · MW420961.1 · 7,204–7,275 bp · −
trnS-GCU · MW420961.1 · 8,410–8,497 bp · −
atpA · MW420961.1 · 10,301–11,824 bp · −
atpF · MW420961.1 · 11,916–13,144 bp · −
atpH · MW420961.1 · 13,509–13,754 bp · −
atpI · MW420961.1 · 14,740–15,483 bp · −
rps2 · MW420961.1 · 15,832–16,542 bp · −
rpoC2 · MW420961.1 · 16,759–20,964 bp · −
rpoC1 · MW420961.1 · 21,119–23,944 bp · −
rpoB · MW420961.1 · 23,971–27,183 bp · −
psbM · MW420961.1 · 30,200–30,304 bp · −
trnD-GUC · MW420961.1 · 30,831–30,904 bp · −
trnY-GUA · MW420961.1 · 31,018–31,101 bp · −
trnE-UUC · MW420961.1 · 31,161–31,233 bp · −
trnS-UCA · MW420961.1 · 35,856–35,948 bp · −
trnfM-CAU · MW420961.1 · 36,939–37,012 bp · −
rps14 · MW420961.1 · 37,162–37,464 bp · −
psaB · MW420961.1 · 37,592–39,796 bp · −
psaA · MW420961.1 · 39,822–42,074 bp · −
ycf3 · MW420961.1 · 42,743–44,678 bp · −
rps4 · MW420961.1 · 45,624–46,229 bp · −
trnT-UGU · MW420961.1 · 46,563–46,635 bp · −
ndhJ · MW420961.1 · 48,918–49,394 bp · −
ndhK · MW420961.1 · 49,502–50,179 bp · −
ndhC · MW420961.1 · 50,232–50,594 bp · −
trnV-UAC · MW420961.1 · 51,048–51,702 bp · −
atpE · MW420961.1 · 52,164–52,565 bp · −
atpB · MW420961.1 · 52,562–54,058 bp · −
pabJ · MW420961.1 · 63,819–63,941 bp · −
psbL · MW420961.1 · 64,075–64,191 bp · −
psbF · MW420961.1 · 64,215–64,334 bp · −
psbE · MW420961.1 · 64,349–64,600 bp · −
trnW-CCA · MW420961.1 · 66,008–66,081 bp · −
trnP-UGG · MW420961.1 · 66,241–66,314 bp · −
rpl20 · MW420961.1 · 68,109–68,495 bp · −
rps12 · MW420961.1 · 69,289–69,414 bp · −
rps12 · MW420961.1 · 96,735–97,610 bp · −
clpP · MW420961.1 · 69,556–71,490 bp · −
psbN · MW420961.1 · 73,845–73,976 bp · −
rpoA · MW420961.1 · 77,337–78,350 bp · −
rps11 · MW420961.1 · 78,422–78,838 bp · −
rpl36 · MW420961.1 · 79,053–79,166 bp · −
infA · MW420961.1 · 79,262–79,495 bp · −
rps8 · MW420961.1 · 79,615–80,025 bp · −
rpl14 · MW420961.1 · 80,192–80,560 bp · −
rpl16 · MW420961.1 · 80,683–81,931 bp · −
rps3 · MW420961.1 · 82,079–82,741 bp · −
rpl22 · MW420961.1 · 82,743–83,198 bp · −
rps19 · MW420961.1 · 83,258–83,536 bp · −
rpl2 · MW420961.1 · 83,592–85,074 bp · −
rpl23 · MW420961.1 · 85,093–85,374 bp · −
trnI-CAU · MW420961.1 · 85,534–85,607 bp · −
trnL-CAA · MW420961.1 · 93,105–93,185 bp · −
ndhB · MW420961.1 · 93,728–95,939 bp · −
rps7 · MW420961.1 · 96,214–96,681 bp · −
ndhF · MW420961.1 · 108,786–111,026 bp · −
ndhD · MW420961.1 · 113,545–115,074 bp · −
psaC · MW420961.1 · 115,174–115,419 bp · −
ndhE · MW420961.1 · 115,675–115,980 bp · −
ndhG · MW420961.1 · 116,191–116,721 bp · −
ndhI · MW420961.1 · 117,078–117,578 bp · −
ndhA · MW420961.1 · 117,659–119,747 bp · −
ndhH · MW420961.1 · 119,749–120,930 bp · −
rps15 · MW420961.1 · 121,027–121,299 bp · −
ycf1 · MW420961.1 · 121,574–127,006 bp · −
trnR-ACG · MW420961.1 · 127,964–128,037 bp · −
rrn5 · MW420961.1 · 128,272–128,392 bp · −
rrn4.5 · MW420961.1 · 128,640–128,742 bp · −
rrn23 · MW420961.1 · 128,841–131,651 bp · −
trnA-UGC · MW420961.1 · 131,821–132,705 bp · −
trnI-GAU · MW420961.1 · 132,771–133,789 bp · −
rrn16 · MW420961.1 · 134,080–135,570 bp · −
trnV-GAC · MW420961.1 · 135,798–135,869 bp · −
ycf15 · MW420961.1 · 142,195–142,392 bp · −
ycf2 · MW420961.1 · 142,534–149,343 bp · −
psbK · MW420961.1 · 7,601–7,786 bp · +
psbI · MW420961.1 · 8,180–8,290 bp · +
trnG-CGA · MW420961.1 · 9,212–9,958 bp · +
trnR-UCU · MW420961.1 · 10,133–10,204 bp · +
trnC-GCA · MW420961.1 · 28,337–28,407 bp · +
petN · MW420961.1 · 29,115–29,204 bp · +
trnT-GGU · MW420961.1 · 31,809–31,880 bp · +
psbD · MW420961.1 · 33,191–34,252 bp · +
psbC · MW420961.1 · 34,200–35,621 bp · +
psbZ · MW420961.1 · 36,268–36,456 bp · +
trnG-GCC · MW420961.1 · 36,715–36,785 bp · +
trnS-GGA · MW420961.1 · 45,255–45,341 bp · +
trnL-UAA · MW420961.1 · 47,318–47,887 bp · +
trnF-GAA · MW420961.1 · 48,192–48,264 bp · +
trnM-CAU · MW420961.1 · 51,883–51,955 bp · +
rbcL · MW420961.1 · 54,825–56,270 bp · +
accD · MW420961.1 · 56,992–58,470 bp · +
psaI · MW420961.1 · 59,181–59,291 bp · +
ycf4 · MW420961.1 · 59,725–60,279 bp · +
cemA · MW420961.1 · 60,962–61,621 bp · +
petA · MW420961.1 · 61,828–62,790 bp · +
petL · MW420961.1 · 65,505–65,600 bp · +
petG · MW420961.1 · 65,776–65,889 bp · +
psbJ · MW420961.1 · 66,587–66,721 bp · +
rpl33 · MW420961.1 · 67,201–67,401 bp · +
rps18 · MW420961.1 · 67,576–67,881 bp · +
rps12 · MW420961.1 · 137,429–138,304 bp · +
psbB · MW420961.1 · 71,959–73,485 bp · +
psbT · MW420961.1 · 73,677–73,784 bp · +
psbH · MW420961.1 · 74,080–74,301 bp · +
petB · MW420961.1 · 74,427–75,793 bp · +
petD · MW420961.1 · 75,982–77,174 bp · +
ycf2 · MW420961.1 · 85,696–92,505 bp · +
ycf15 · MW420961.1 · 92,647–92,844 bp · +
trnV-GAC · MW420961.1 · 99,170–99,241 bp · +
rrn16 · MW420961.1 · 99,469–100,959 bp · +
trnI-GAU · MW420961.1 · 101,250–102,268 bp · +
trnA-UGC · MW420961.1 · 102,334–103,218 bp · +
rrn23 · MW420961.1 · 103,388–106,198 bp · +
rrn4.5 · MW420961.1 · 106,297–106,399 bp · +
rrn5 · MW420961.1 · 106,647–106,767 bp · +
trnR-ACG · MW420961.1 · 107,002–107,075 bp · +
trnN-GUU · MW420961.1 · 107,632–107,703 bp · +
rpl32 · MW420961.1 · 111,547–111,723 bp · +
trnL-UAG · MW420961.1 · 112,162–112,241 bp · +
ccsA · MW420961.1 · 112,336–113,310 bp · +
trnN-GUU · MW420961.1 · 127,336–127,407 bp · +
rps7 · MW420961.1 · 138,358–138,825 bp · +
ndhB · MW420961.1 · 139,100–141,311 bp · +
trnL-CAA · MW420961.1 · 141,854–141,934 bp · +
trnI-CAU · MW420961.1 · 149,432–149,505 bp · +
rpl23 · MW420961.1 · 149,665–149,946 bp · +
rpl2 · MW420961.1 · 149,965–151,447 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria scutellarioides
ANNOTATED PLASTOME
MW420961.1
151,544 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37886 75772 113658 151544 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 268 1326 1059 Locate
trnK-UUU gene − 1563 4144 2582 Locate
matK gene − 1854 3392 1539 Locate
rps16 gene − 5036 6209 1174 Locate
trnQ-UUC gene − 7204 7275 72 Locate
psbK gene + 7601 7786 186 Locate
psbI gene + 8180 8290 111 Locate
trnS-GCU gene − 8410 8497 88 Locate
trnG-CGA gene + 9212 9958 747 Locate
trnR-UCU gene + 10133 10204 72 Locate
atpA gene − 10301 11824 1524 Locate
atpF gene − 11916 13144 1229 Locate
atpH gene − 13509 13754 246 Locate
atpI gene − 14740 15483 744 Locate
rps2 gene − 15832 16542 711 Locate
rpoC2 gene − 16759 20964 4206 Locate
rpoC1 gene − 21119 23944 2826 Locate
rpoB gene − 23971 27183 3213 Locate
trnC-GCA gene + 28337 28407 71 Locate
petN gene + 29115 29204 90 Locate
psbM gene − 30200 30304 105 Locate
trnD-GUC gene − 30831 30904 74 Locate
trnY-GUA gene − 31018 31101 84 Locate
trnE-UUC gene − 31161 31233 73 Locate
trnT-GGU gene + 31809 31880 72 Locate
psbD gene + 33191 34252 1062 Locate
psbC gene + 34200 35621 1422 Locate
trnS-UCA gene − 35856 35948 93 Locate
psbZ gene + 36268 36456 189 Locate
trnG-GCC gene + 36715 36785 71 Locate
trnfM-CAU gene − 36939 37012 74 Locate
rps14 gene − 37162 37464 303 Locate
psaB gene − 37592 39796 2205 Locate
psaA gene − 39822 42074 2253 Locate
ycf3 gene − 42743 44678 1936 Locate
trnS-GGA gene + 45255 45341 87 Locate
rps4 gene − 45624 46229 606 Locate
trnT-UGU gene − 46563 46635 73 Locate
trnL-UAA gene + 47318 47887 570 Locate
trnF-GAA gene + 48192 48264 73 Locate
ndhJ gene − 48918 49394 477 Locate
ndhK gene − 49502 50179 678 Locate
ndhC gene − 50232 50594 363 Locate
trnV-UAC gene − 51048 51702 655 Locate
trnM-CAU gene + 51883 51955 73 Locate
atpE gene − 52164 52565 402 Locate
atpB gene − 52562 54058 1497 Locate
rbcL gene + 54825 56270 1446 Locate
accD gene + 56992 58470 1479 Locate
psaI gene + 59181 59291 111 Locate
ycf4 gene + 59725 60279 555 Locate
cemA gene + 60962 61621 660 Locate
petA gene + 61828 62790 963 Locate
pabJ gene − 63819 63941 123 Locate
psbL gene − 64075 64191 117 Locate
psbF gene − 64215 64334 120 Locate
psbE gene − 64349 64600 252 Locate
petL gene + 65505 65600 96 Locate
petG gene + 65776 65889 114 Locate
trnW-CCA gene − 66008 66081 74 Locate
trnP-UGG gene − 66241 66314 74 Locate
psbJ gene + 66587 66721 135 Locate
rpl33 gene + 67201 67401 201 Locate
rps18 gene + 67576 67881 306 Locate
rpl20 gene − 68109 68495 387 Locate
rps12 gene − 69289 69414 126 Locate
clpP gene − 69556 71490 1935 Locate
psbB gene + 71959 73485 1527 Locate
psbT gene + 73677 73784 108 Locate
psbN gene − 73845 73976 132 Locate
psbH gene + 74080 74301 222 Locate
petB gene + 74427 75793 1367 Locate
petD gene + 75982 77174 1193 Locate
rpoA gene − 77337 78350 1014 Locate
rps11 gene − 78422 78838 417 Locate
rpl36 gene − 79053 79166 114 Locate
infA gene − 79262 79495 234 Locate
rps8 gene − 79615 80025 411 Locate
rpl14 gene − 80192 80560 369 Locate
rpl16 gene − 80683 81931 1249 Locate
rps3 gene − 82079 82741 663 Locate
rpl22 gene − 82743 83198 456 Locate
rps19 gene − 83258 83536 279 Locate
rpl2 gene − 83592 85074 1483 Locate
rpl23 gene − 85093 85374 282 Locate
trnI-CAU gene − 85534 85607 74 Locate
ycf2 gene + 85696 92505 6810 Locate
ycf15 gene + 92647 92844 198 Locate
trnL-CAA gene − 93105 93185 81 Locate
ndhB gene − 93728 95939 2212 Locate
rps7 gene − 96214 96681 468 Locate
rps12 gene − 96735 97610 876 Locate
trnV-GAC gene + 99170 99241 72 Locate
rrn16 gene + 99469 100959 1491 Locate
trnI-GAU gene + 101250 102268 1019 Locate
trnA-UGC gene + 102334 103218 885 Locate
rrn23 gene + 103388 106198 2811 Locate
rrn4.5 gene + 106297 106399 103 Locate
rrn5 gene + 106647 106767 121 Locate
trnR-ACG gene + 107002 107075 74 Locate
trnN-GUU gene + 107632 107703 72 Locate
ndhF gene − 108786 111026 2241 Locate
rpl32 gene + 111547 111723 177 Locate
trnL-UAG gene + 112162 112241 80 Locate
ccsA gene + 112336 113310 975 Locate
ndhD gene − 113545 115074 1530 Locate
psaC gene − 115174 115419 246 Locate
ndhE gene − 115675 115980 306 Locate
ndhG gene − 116191 116721 531 Locate
ndhI gene − 117078 117578 501 Locate
ndhA gene − 117659 119747 2089 Locate
ndhH gene − 119749 120930 1182 Locate
rps15 gene − 121027 121299 273 Locate
ycf1 gene − 121574 127006 5433 Locate
trnN-GUU gene + 127336 127407 72 Locate
trnR-ACG gene − 127964 128037 74 Locate
rrn5 gene − 128272 128392 121 Locate
rrn4.5 gene − 128640 128742 103 Locate
rrn23 gene − 128841 131651 2811 Locate
trnA-UGC gene − 131821 132705 885 Locate
trnI-GAU gene − 132771 133789 1019 Locate
rrn16 gene − 134080 135570 1491 Locate
trnV-GAC gene − 135798 135869 72 Locate
rps12 gene + 137429 138304 876 Locate
rps7 gene + 138358 138825 468 Locate
ndhB gene + 139100 141311 2212 Locate
trnL-CAA gene + 141854 141934 81 Locate
ycf15 gene − 142195 142392 198 Locate
ycf2 gene − 142534 149343 6810 Locate
trnI-CAU gene + 149432 149505 74 Locate
rpl23 gene + 149665 149946 282 Locate
rpl2 gene + 149965 151447 1483 Locate
Status Available
Accession MW420961.1
Length 151,544 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources