Scutellaria serrata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059340.1 · 2–75 bp · −
psbA · PQ059340.1 · 380–1,438 bp · −
trnK-UUU · PQ059340.1 · 1,681–4,275 bp · −
matK · PQ059340.1 · 1,982–3,517 bp · −
rps16 · PQ059340.1 · 5,177–6,346 bp · −
trnQ-UUG · PQ059340.1 · 7,274–7,345 bp · −
trnS-GCU · PQ059340.1 · 8,469–8,556 bp · −
atpA · PQ059340.1 · 10,341–11,864 bp · −
atpF · PQ059340.1 · 11,937–13,170 bp · −
atpH · PQ059340.1 · 13,534–13,779 bp · −
atpI · PQ059340.1 · 14,769–15,512 bp · −
rps2 · PQ059340.1 · 15,852–16,688 bp · −
rpoC2 · PQ059340.1 · 16,785–20,978 bp · −
rpoC1 · PQ059340.1 · 21,133–23,941 bp · −
rpoB · PQ059340.1 · 23,968–27,180 bp · −
psbM · PQ059340.1 · 30,195–30,308 bp · −
trnD-GUC · PQ059340.1 · 30,838–30,911 bp · −
trnY-GUA · PQ059340.1 · 31,031–31,114 bp · −
trnE-UUC · PQ059340.1 · 31,174–31,246 bp · −
trnS-UGA · PQ059340.1 · 35,864–35,955 bp · −
trnfM-CAU · PQ059340.1 · 36,963–37,036 bp · −
rps14 · PQ059340.1 · 37,186–37,488 bp · −
psaB · PQ059340.1 · 37,616–39,820 bp · −
psaA · PQ059340.1 · 39,845–42,097 bp · −
ycf3 · PQ059340.1 · 42,793–44,704 bp · −
rps4 · PQ059340.1 · 45,415–46,020 bp · −
trnT-UGU · PQ059340.1 · 46,359–46,431 bp · −
ndhJ · PQ059340.1 · 48,658–49,134 bp · −
ndhK · PQ059340.1 · 49,242–49,919 bp · −
ndhC · PQ059340.1 · 49,972–50,334 bp · −
trnV-UAC · PQ059340.1 · 51,330–51,982 bp · −
atpE · PQ059340.1 · 52,446–52,847 bp · −
atpB · PQ059340.1 · 52,844–54,340 bp · −
psbJ · PQ059340.1 · 64,077–64,199 bp · −
psbL · PQ059340.1 · 64,334–64,450 bp · −
psbF · PQ059340.1 · 64,474–64,593 bp · −
psbE · PQ059340.1 · 64,608–64,859 bp · −
trnW-CCA · PQ059340.1 · 66,270–66,343 bp · −
trnP-UGG · PQ059340.1 · 66,507–66,580 bp · −
rpl20 · PQ059340.1 · 68,391–68,777 bp · −
rps12 · PQ059340.1 · 69,562–69,687 bp · −
rps12 · PQ059340.1 · 96,883–97,673 bp · −
clpP · PQ059340.1 · 69,829–71,758 bp · −
psbN · PQ059340.1 · 74,107–74,238 bp · −
rpoA · PQ059340.1 · 77,615–78,628 bp · −
rps11 · PQ059340.1 · 78,700–79,116 bp · −
rpl36 · PQ059340.1 · 79,218–79,331 bp · −
infA · PQ059340.1 · 79,427–79,660 bp · −
rps8 · PQ059340.1 · 79,781–80,191 bp · −
rpl14 · PQ059340.1 · 80,350–80,718 bp · −
rpl16 · PQ059340.1 · 80,845–82,088 bp · −
rps3 · PQ059340.1 · 82,243–82,905 bp · −
rpl22 · PQ059340.1 · 82,907–83,362 bp · −
rps19 · PQ059340.1 · 83,427–83,705 bp · −
rpl2 · PQ059340.1 · 83,761–85,243 bp · −
rpl23 · PQ059340.1 · 85,262–85,543 bp · −
trnI-CAU · PQ059340.1 · 85,703–85,776 bp · −
trnL-CAA · PQ059340.1 · 93,262–93,342 bp · −
ndhB · PQ059340.1 · 93,885–96,087 bp · −
rps7 · PQ059340.1 · 96,362–96,829 bp · −
trnN-GUU · PQ059340.1 · 107,693–107,764 bp · −
ndhF · PQ059340.1 · 108,789–111,080 bp · −
ndhD · PQ059340.1 · 113,596–115,119 bp · −
psaC · PQ059340.1 · 115,225–115,470 bp · −
ndhE · PQ059340.1 · 115,722–116,027 bp · −
ndhG · PQ059340.1 · 116,258–116,788 bp · −
ndhI · PQ059340.1 · 117,153–117,653 bp · −
ndhA · PQ059340.1 · 117,734–119,831 bp · −
ndhH · PQ059340.1 · 119,833–121,068 bp · −
rps15 · PQ059340.1 · 121,111–121,383 bp · −
ycf1 · PQ059340.1 · 121,657–126,303 bp · −
trnR-ACG · PQ059340.1 · 128,042–128,115 bp · −
rrn5 · PQ059340.1 · 128,340–128,460 bp · −
rrn4.5 · PQ059340.1 · 128,708–128,810 bp · −
rrn23 · PQ059340.1 · 128,909–131,721 bp · −
trnA-UGC · PQ059340.1 · 131,884–132,771 bp · −
trnI-GAU · PQ059340.1 · 132,836–133,856 bp · −
ycf68 · PQ059340.1 · 133,462–133,701 bp · −
rrn16 · PQ059340.1 · 134,155–135,645 bp · −
trnV-GAC · PQ059340.1 · 135,873–135,944 bp · −
ycf15 · PQ059340.1 · 142,186–142,434 bp · −
ycf2 · PQ059340.1 · 142,525–149,322 bp · −
psbK · PQ059340.1 · 7,678–7,863 bp · +
psbI · PQ059340.1 · 8,247–8,357 bp · +
trnG-UCC · PQ059340.1 · 9,231–9,992 bp · +
trnR-UCU · PQ059340.1 · 10,167–10,238 bp · +
trnC-GCA · PQ059340.1 · 28,336–28,406 bp · +
petN · PQ059340.1 · 29,118–29,207 bp · +
trnT-GGU · PQ059340.1 · 31,830–31,901 bp · +
psbD · PQ059340.1 · 33,194–34,255 bp · +
psbC · PQ059340.1 · 34,203–35,624 bp · +
psbZ · PQ059340.1 · 36,275–36,463 bp · +
trnG-GCC · PQ059340.1 · 36,739–36,809 bp · +
trnS-GGA · PQ059340.1 · 45,045–45,131 bp · +
trnL-UAA · PQ059340.1 · 47,064–47,628 bp · +
trnF-GAA · PQ059340.1 · 47,934–48,006 bp · +
trnM-CAU · PQ059340.1 · 52,163–52,235 bp · +
rbcL · PQ059340.1 · 55,086–56,549 bp · +
accD · PQ059340.1 · 57,261–58,739 bp · +
psaI · PQ059340.1 · 59,434–59,544 bp · +
ycf4 · PQ059340.1 · 59,971–60,525 bp · +
cemA · PQ059340.1 · 61,266–61,865 bp · +
petA · PQ059340.1 · 62,072–63,034 bp · +
petL · PQ059340.1 · 65,767–65,862 bp · +
petG · PQ059340.1 · 66,038–66,151 bp · +
psaJ · PQ059340.1 · 66,849–66,983 bp · +
rpl33 · PQ059340.1 · 67,455–67,655 bp · +
rps18 · PQ059340.1 · 67,829–68,155 bp · +
rps12 · PQ059340.1 · 137,514–138,304 bp · +
psbB · PQ059340.1 · 72,214–73,740 bp · +
psbT · PQ059340.1 · 73,932–74,033 bp · +
psbH · PQ059340.1 · 74,342–74,563 bp · +
petB · PQ059340.1 · 74,688–76,058 bp · +
petD · PQ059340.1 · 76,247–77,452 bp · +
ycf2 · PQ059340.1 · 85,865–92,662 bp · +
ycf15 · PQ059340.1 · 92,753–93,001 bp · +
trnV-GAC · PQ059340.1 · 99,243–99,314 bp · +
rrn16 · PQ059340.1 · 99,542–101,032 bp · +
trnI-GAU · PQ059340.1 · 101,331–102,351 bp · +
trnA-UGC · PQ059340.1 · 102,416–103,303 bp · +
rrn23 · PQ059340.1 · 103,466–106,278 bp · +
rrn4.5 · PQ059340.1 · 106,377–106,479 bp · +
rrn5 · PQ059340.1 · 106,727–106,847 bp · +
trnR-ACG · PQ059340.1 · 107,072–107,145 bp · +
rpl32 · PQ059340.1 · 111,602–111,778 bp · +
trnL-UAG · PQ059340.1 · 112,214–112,293 bp · +
ccsA · PQ059340.1 · 112,387–113,361 bp · +
trnN-GUU · PQ059340.1 · 127,423–127,494 bp · +
rps7 · PQ059340.1 · 138,358–138,825 bp · +
ndhB · PQ059340.1 · 139,100–141,302 bp · +
trnL-CAA · PQ059340.1 · 141,845–141,925 bp · +
trnI-CAU · PQ059340.1 · 149,411–149,484 bp · +
rpl23 · PQ059340.1 · 149,644–149,925 bp · +
rpl2 · PQ059340.1 · 149,944–151,426 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria serrata
ANNOTATED PLASTOME
PQ059340.1
151,523 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37881 75762 113642 151523 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1681 4275 2595 Locate
matK gene − 1982 3517 1536 Locate
rps16 gene − 5177 6346 1170 Locate
trnQ-UUG gene − 7274 7345 72 Locate
psbK gene + 7678 7863 186 Locate
psbI gene + 8247 8357 111 Locate
trnS-GCU gene − 8469 8556 88 Locate
trnG-UCC gene + 9231 9992 762 Locate
trnR-UCU gene + 10167 10238 72 Locate
atpA gene − 10341 11864 1524 Locate
atpF gene − 11937 13170 1234 Locate
atpH gene − 13534 13779 246 Locate
atpI gene − 14769 15512 744 Locate
rps2 gene − 15852 16688 837 Locate
rpoC2 gene − 16785 20978 4194 Locate
rpoC1 gene − 21133 23941 2809 Locate
rpoB gene − 23968 27180 3213 Locate
trnC-GCA gene + 28336 28406 71 Locate
petN gene + 29118 29207 90 Locate
psbM gene − 30195 30308 114 Locate
trnD-GUC gene − 30838 30911 74 Locate
trnY-GUA gene − 31031 31114 84 Locate
trnE-UUC gene − 31174 31246 73 Locate
trnT-GGU gene + 31830 31901 72 Locate
psbD gene + 33194 34255 1062 Locate
psbC gene + 34203 35624 1422 Locate
trnS-UGA gene − 35864 35955 92 Locate
psbZ gene + 36275 36463 189 Locate
trnG-GCC gene + 36739 36809 71 Locate
trnfM-CAU gene − 36963 37036 74 Locate
rps14 gene − 37186 37488 303 Locate
psaB gene − 37616 39820 2205 Locate
psaA gene − 39845 42097 2253 Locate
ycf3 gene − 42793 44704 1912 Locate
trnS-GGA gene + 45045 45131 87 Locate
rps4 gene − 45415 46020 606 Locate
trnT-UGU gene − 46359 46431 73 Locate
trnL-UAA gene + 47064 47628 565 Locate
trnF-GAA gene + 47934 48006 73 Locate
ndhJ gene − 48658 49134 477 Locate
ndhK gene − 49242 49919 678 Locate
ndhC gene − 49972 50334 363 Locate
trnV-UAC gene − 51330 51982 653 Locate
trnM-CAU gene + 52163 52235 73 Locate
atpE gene − 52446 52847 402 Locate
atpB gene − 52844 54340 1497 Locate
rbcL gene + 55086 56549 1464 Locate
accD gene + 57261 58739 1479 Locate
psaI gene + 59434 59544 111 Locate
ycf4 gene + 59971 60525 555 Locate
cemA gene + 61266 61865 600 Locate
petA gene + 62072 63034 963 Locate
psbJ gene − 64077 64199 123 Locate
psbL gene − 64334 64450 117 Locate
psbF gene − 64474 64593 120 Locate
psbE gene − 64608 64859 252 Locate
petL gene + 65767 65862 96 Locate
petG gene + 66038 66151 114 Locate
trnW-CCA gene − 66270 66343 74 Locate
trnP-UGG gene − 66507 66580 74 Locate
psaJ gene + 66849 66983 135 Locate
rpl33 gene + 67455 67655 201 Locate
rps18 gene + 67829 68155 327 Locate
rpl20 gene − 68391 68777 387 Locate
rps12 gene − 69562 69687 126 Locate
clpP gene − 69829 71758 1930 Locate
psbB gene + 72214 73740 1527 Locate
psbT gene + 73932 74033 102 Locate
psbN gene − 74107 74238 132 Locate
psbH gene + 74342 74563 222 Locate
petB gene + 74688 76058 1371 Locate
petD gene + 76247 77452 1206 Locate
rpoA gene − 77615 78628 1014 Locate
rps11 gene − 78700 79116 417 Locate
rpl36 gene − 79218 79331 114 Locate
infA gene − 79427 79660 234 Locate
rps8 gene − 79781 80191 411 Locate
rpl14 gene − 80350 80718 369 Locate
rpl16 gene − 80845 82088 1244 Locate
rps3 gene − 82243 82905 663 Locate
rpl22 gene − 82907 83362 456 Locate
rps19 gene − 83427 83705 279 Locate
rpl2 gene − 83761 85243 1483 Locate
rpl23 gene − 85262 85543 282 Locate
trnI-CAU gene − 85703 85776 74 Locate
ycf2 gene + 85865 92662 6798 Locate
ycf15 gene + 92753 93001 249 Locate
trnL-CAA gene − 93262 93342 81 Locate
ndhB gene − 93885 96087 2203 Locate
rps7 gene − 96362 96829 468 Locate
rps12 gene − 96883 97673 791 Locate
trnV-GAC gene + 99243 99314 72 Locate
rrn16 gene + 99542 101032 1491 Locate
trnI-GAU gene + 101331 102351 1021 Locate
trnA-UGC gene + 102416 103303 888 Locate
rrn23 gene + 103466 106278 2813 Locate
rrn4.5 gene + 106377 106479 103 Locate
rrn5 gene + 106727 106847 121 Locate
trnR-ACG gene + 107072 107145 74 Locate
trnN-GUU gene − 107693 107764 72 Locate
ndhF gene − 108789 111080 2292 Locate
rpl32 gene + 111602 111778 177 Locate
trnL-UAG gene + 112214 112293 80 Locate
ccsA gene + 112387 113361 975 Locate
ndhD gene − 113596 115119 1524 Locate
psaC gene − 115225 115470 246 Locate
ndhE gene − 115722 116027 306 Locate
ndhG gene − 116258 116788 531 Locate
ndhI gene − 117153 117653 501 Locate
ndhA gene − 117734 119831 2098 Locate
ndhH gene − 119833 121068 1236 Locate
rps15 gene − 121111 121383 273 Locate
ycf1 gene − 121657 126303 4647 Locate
trnN-GUU gene + 127423 127494 72 Locate
trnR-ACG gene − 128042 128115 74 Locate
rrn5 gene − 128340 128460 121 Locate
rrn4.5 gene − 128708 128810 103 Locate
rrn23 gene − 128909 131721 2813 Locate
trnA-UGC gene − 131884 132771 888 Locate
trnI-GAU gene − 132836 133856 1021 Locate
ycf68 gene − 133462 133701 240 Locate
rrn16 gene − 134155 135645 1491 Locate
trnV-GAC gene − 135873 135944 72 Locate
rps12 gene + 137514 138304 791 Locate
rps7 gene + 138358 138825 468 Locate
ndhB gene + 139100 141302 2203 Locate
trnL-CAA gene + 141845 141925 81 Locate
ycf15 gene − 142186 142434 249 Locate
ycf2 gene − 142525 149322 6798 Locate
trnI-CAU gene + 149411 149484 74 Locate
rpl23 gene + 149644 149925 282 Locate
rpl2 gene + 149944 151426 1483 Locate
Status Available
Accession PQ059340.1
Length 151,523 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources