Coordinate-aware organelle record

Scutellaria shikokiana chloroplast genome

Available PQ059190.1 152,554 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	352	1411	1059
trnK-UUU	gene	translation-rna	−	1643	4231	2588
matK	gene	other	−	1938	3474	1536
rps16	gene	ribosomal-protein	−	5135	6318	1183
trnQ-UUG	gene	translation-rna	−	7447	7519	72
psbK	gene	photosystem-ii	+	7843	8029	186
psbI	gene	photosystem-ii	+	8420	8531	111
trnS-GCU	gene	translation-rna	−	8648	8736	88
trnG-UCC	gene	translation-rna	+	9423	10183	760
trnR-UCU	gene	translation-rna	+	10357	10429	72
atpA	gene	atp-synthase	−	10525	12049	1524
atpF	gene	atp-synthase	−	12122	13350	1228
atpH	gene	atp-synthase	−	13718	13964	246
atpI	gene	atp-synthase	−	14960	15704	744
rps2	gene	ribosomal-protein	−	16050	16761	711
rpoC2	gene	rna-polymerase	−	16977	21183	4206
rpoC1	gene	rna-polymerase	−	21337	24163	2826
rpoB	gene	rna-polymerase	−	24189	27402	3213
trnC-GCA	gene	translation-rna	+	28566	28637	71
petN	gene	cytochrome	+	29347	29437	90
psbM	gene	photosystem-ii	−	30435	30540	105
trnD-GUC	gene	translation-rna	−	31065	31139	74
trnY-GUA	gene	translation-rna	−	31252	31336	84
trnE-UUC	gene	translation-rna	−	31395	31468	73
trnT-GGU	gene	translation-rna	+	32050	32122	72
psbD	gene	photosystem-ii	+	33432	34494	1062
psbC	gene	photosystem-ii	+	34441	35863	1422
trnS-UGA	gene	translation-rna	−	36098	36190	92
psbZ	gene	photosystem-ii	+	36500	36689	189
trnG-GCC	gene	translation-rna	+	36960	37031	71
trnfM-CAU	gene	translation-rna	−	37175	37249	74
rps14	gene	ribosomal-protein	−	37398	37701	303
psaB	gene	photosystem-i	−	37828	40033	2205
psaA	gene	photosystem-i	−	40058	42311	2253
ycf3	gene	other	−	42995	44919	1924
trnS-GGA	gene	translation-rna	+	45804	45891	87
rps4	gene	ribosomal-protein	−	46176	46782	606
trnT-UGU	gene	translation-rna	−	47122	47195	73
trnL-UAA	gene	translation-rna	+	47881	48450	569
trnF-GAA	gene	translation-rna	+	48750	48823	73
ndhJ	gene	nad-dehydrogenase	−	49471	49948	477
ndhK	gene	nad-dehydrogenase	−	50055	50733	678
ndhC	gene	nad-dehydrogenase	−	50785	51148	363
trnV-UAC	gene	translation-rna	−	52145	52798	653
trnM-CAU	gene	translation-rna	+	52978	53051	73
atpE	gene	atp-synthase	−	53260	53662	402
atpB	gene	atp-synthase	−	53658	55146	1488
rbcL	gene	other	+	55899	57363	1464
accD	gene	other	+	58064	59531	1467
psaI	gene	photosystem-i	+	60262	60373	111
ycf4	gene	other	+	60806	61361	555
cemA	gene	other	+	62109	62709	600
petA	gene	cytochrome	+	62915	63878	963
psbJ	gene	photosystem-ii	−	64892	65015	123
psbL	gene	photosystem-ii	−	65148	65370	222
psbF	gene	photosystem-ii	−	65288	65408	120
psbE	gene	photosystem-ii	−	65422	65674	252
petL	gene	cytochrome	+	66581	66677	96
petG	gene	cytochrome	+	66851	66965	114
trnW-CCA	gene	translation-rna	−	67083	67157	74
trnP-UGG	gene	translation-rna	−	67326	67400	74
psaJ	gene	photosystem-i	+	67608	67806	198
rpl33	gene	ribosomal-protein	+	68277	68478	201
rps18	gene	ribosomal-protein	+	68652	68958	306
rpl20	gene	ribosomal-protein	−	69194	69581	387
rps12	gene	ribosomal-protein	−	70381	98515	28134
rps12	gene	ribosomal-protein	+	70381	139321	68940
clpP	gene	other	−	70637	72571	1934
psbB	gene	photosystem-ii	+	73045	74572	1527
psbT	gene	photosystem-ii	+	74763	74865	102
psbN	gene	photosystem-ii	−	74938	75070	132
psbH	gene	photosystem-ii	+	75173	75395	222
petB	gene	cytochrome	+	75519	76888	1369
petD	gene	cytochrome	+	77076	78278	1202
rpoA	gene	rna-polymerase	−	78462	79455	993
rps11	gene	ribosomal-protein	−	79526	79943	417
rpl36	gene	ribosomal-protein	−	80044	80158	114
infA	gene	other	−	80253	80487	234
rps8	gene	ribosomal-protein	−	80605	81016	411
rpl14	gene	ribosomal-protein	−	81181	81550	369
rpl16	gene	ribosomal-protein	−	81676	82920	1244
rps3	gene	ribosomal-protein	−	83074	83737	663
rpl22	gene	ribosomal-protein	−	83738	84194	456
rps19	gene	ribosomal-protein	−	84253	84532	279
rpl2	gene	ribosomal-protein	−	84586	86069	1483
rpl23	gene	ribosomal-protein	−	86087	86369	282
trnI-CAU	gene	translation-rna	−	86528	86602	74
ycf2	gene	other	+	86690	93500	6810
ycf15	gene	other	+	93641	93839	198
trnL-CAA	gene	translation-rna	−	94094	94175	81
ndhB	gene	nad-dehydrogenase	−	94717	96929	2212
rps7	gene	ribosomal-protein	−	97203	97671	468
trnV-GAC	gene	translation-rna	+	100092	100164	72
rrn16	gene	ribosomal-rna	+	100391	101882	1491
trnI-GAU	gene	translation-rna	+	102180	103201	1021
trnA-UGC	gene	translation-rna	+	103265	104153	888
rrn23	gene	ribosomal-rna	+	104322	107135	2813
rrn4.5	gene	ribosomal-rna	+	107233	107336	103
rrn5	gene	ribosomal-rna	+	107583	107704	121
trnR-ACG	gene	translation-rna	+	107938	108012	74
trnN-GUU	gene	translation-rna	−	108558	108630	72
ndhF	gene	nad-dehydrogenase	−	109706	111947	2241
rpl32	gene	ribosomal-protein	+	112463	112640	177
trnL-UAG	gene	translation-rna	+	113083	113163	80
ccsA	gene	other	+	113211	114240	1029
ndhD	gene	nad-dehydrogenase	−	114478	115981	1503
psaC	gene	photosystem-i	−	116100	116346	246
ndhE	gene	nad-dehydrogenase	−	116602	116908	306
ndhG	gene	nad-dehydrogenase	−	117138	117669	531
ndhI	gene	nad-dehydrogenase	−	118033	118534	501
ndhA	gene	nad-dehydrogenase	−	118614	120714	2100
ndhH	gene	nad-dehydrogenase	−	120715	121927	1212
rps15	gene	ribosomal-protein	−	121999	122332	333
ycf1	gene	other	−	122542	128197	5655
trnN-GUU	gene	translation-rna	+	128415	128487	72
trnR-ACG	gene	translation-rna	−	129033	129107	74
rrn5	gene	ribosomal-rna	−	129341	129462	121
rrn4.5	gene	ribosomal-rna	−	129709	129812	103
rrn23	gene	ribosomal-rna	−	129910	132723	2813
trnA-UGC	gene	translation-rna	−	132892	133780	888
trnI-GAU	gene	translation-rna	−	133844	134865	1021
ycf68	gene	other	−	134470	134710	240
rrn16	gene	ribosomal-rna	−	135163	136654	1491
trnV-GAC	gene	translation-rna	−	136881	136953	72
rps7	gene	ribosomal-protein	+	139374	139842	468
ndhB	gene	nad-dehydrogenase	+	140116	142328	2212
trnL-CAA	gene	translation-rna	+	142870	142951	81
ycf15	gene	other	−	143206	143404	198
ycf2	gene	other	−	143545	150355	6810
trnI-CAU	gene	translation-rna	+	150443	150517	74
rpl23	gene	ribosomal-protein	+	150676	150958	282
rpl2	gene	ribosomal-protein	+	150976	152459	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePQ059190.1DNA · accDPQ059190DNA · atpBPQ059190DNA · matKPQ059190DNA · ndhFPQ059190DNA · psbAPQ059190DNA · rbcLPQ059190DNA · rps12PQ059190DNA · ycf1PQ059190