Scutellaria shikokiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059190.1 · 3–76 bp · −
psbA · PQ059190.1 · 353–1,411 bp · −
trnK-UUU · PQ059190.1 · 1,644–4,231 bp · −
matK · PQ059190.1 · 1,939–3,474 bp · −
rps16 · PQ059190.1 · 5,136–6,318 bp · −
trnQ-UUG · PQ059190.1 · 7,448–7,519 bp · −
trnS-GCU · PQ059190.1 · 8,649–8,736 bp · −
atpA · PQ059190.1 · 10,526–12,049 bp · −
atpF · PQ059190.1 · 12,123–13,350 bp · −
atpH · PQ059190.1 · 13,719–13,964 bp · −
atpI · PQ059190.1 · 14,961–15,704 bp · −
rps2 · PQ059190.1 · 16,051–16,761 bp · −
rpoC2 · PQ059190.1 · 16,978–21,183 bp · −
rpoC1 · PQ059190.1 · 21,338–24,163 bp · −
rpoB · PQ059190.1 · 24,190–27,402 bp · −
psbM · PQ059190.1 · 30,436–30,540 bp · −
trnD-GUC · PQ059190.1 · 31,066–31,139 bp · −
trnY-GUA · PQ059190.1 · 31,253–31,336 bp · −
trnE-UUC · PQ059190.1 · 31,396–31,468 bp · −
trnS-UGA · PQ059190.1 · 36,099–36,190 bp · −
trnfM-CAU · PQ059190.1 · 37,176–37,249 bp · −
rps14 · PQ059190.1 · 37,399–37,701 bp · −
psaB · PQ059190.1 · 37,829–40,033 bp · −
psaA · PQ059190.1 · 40,059–42,311 bp · −
ycf3 · PQ059190.1 · 42,996–44,919 bp · −
rps4 · PQ059190.1 · 46,177–46,782 bp · −
trnT-UGU · PQ059190.1 · 47,123–47,195 bp · −
ndhJ · PQ059190.1 · 49,472–49,948 bp · −
ndhK · PQ059190.1 · 50,056–50,733 bp · −
ndhC · PQ059190.1 · 50,786–51,148 bp · −
trnV-UAC · PQ059190.1 · 52,146–52,798 bp · −
atpE · PQ059190.1 · 53,261–53,662 bp · −
atpB · PQ059190.1 · 53,659–55,146 bp · −
psbJ · PQ059190.1 · 64,893–65,015 bp · −
psbL · PQ059190.1 · 65,149–65,370 bp · −
psbF · PQ059190.1 · 65,289–65,408 bp · −
psbE · PQ059190.1 · 65,423–65,674 bp · −
trnW-CCA · PQ059190.1 · 67,084–67,157 bp · −
trnP-UGG · PQ059190.1 · 67,327–67,400 bp · −
rpl20 · PQ059190.1 · 69,195–69,581 bp · −
rps12 · PQ059190.1 · 70,382–70,495 bp · −
rps12 · PQ059190.1 · 97,725–98,515 bp · −
clpP · PQ059190.1 · 70,638–72,571 bp · −
psbN · PQ059190.1 · 74,939–75,070 bp · −
rpoA · PQ059190.1 · 78,463–79,455 bp · −
rps11 · PQ059190.1 · 79,527–79,943 bp · −
rpl36 · PQ059190.1 · 80,045–80,158 bp · −
infA · PQ059190.1 · 80,254–80,487 bp · −
rps8 · PQ059190.1 · 80,606–81,016 bp · −
rpl14 · PQ059190.1 · 81,182–81,550 bp · −
rpl16 · PQ059190.1 · 81,677–82,920 bp · −
rps3 · PQ059190.1 · 83,075–83,737 bp · −
rpl22 · PQ059190.1 · 83,739–84,194 bp · −
rps19 · PQ059190.1 · 84,254–84,532 bp · −
rpl2 · PQ059190.1 · 84,587–86,069 bp · −
rpl23 · PQ059190.1 · 86,088–86,369 bp · −
trnI-CAU · PQ059190.1 · 86,529–86,602 bp · −
trnL-CAA · PQ059190.1 · 94,095–94,175 bp · −
ndhB · PQ059190.1 · 94,718–96,929 bp · −
rps7 · PQ059190.1 · 97,204–97,671 bp · −
trnN-GUU · PQ059190.1 · 108,559–108,630 bp · −
ndhF · PQ059190.1 · 109,707–111,947 bp · −
ndhD · PQ059190.1 · 114,479–115,981 bp · −
psaC · PQ059190.1 · 116,101–116,346 bp · −
ndhE · PQ059190.1 · 116,603–116,908 bp · −
ndhG · PQ059190.1 · 117,139–117,669 bp · −
ndhI · PQ059190.1 · 118,034–118,534 bp · −
ndhA · PQ059190.1 · 118,615–120,714 bp · −
ndhH · PQ059190.1 · 120,716–121,927 bp · −
rps15 · PQ059190.1 · 122,000–122,332 bp · −
ycf1 · PQ059190.1 · 122,543–128,197 bp · −
trnR-ACG · PQ059190.1 · 129,034–129,107 bp · −
rrn5 · PQ059190.1 · 129,342–129,462 bp · −
rrn4.5 · PQ059190.1 · 129,710–129,812 bp · −
rrn23 · PQ059190.1 · 129,911–132,723 bp · −
trnA-UGC · PQ059190.1 · 132,893–133,780 bp · −
trnI-GAU · PQ059190.1 · 133,845–134,865 bp · −
ycf68 · PQ059190.1 · 134,471–134,710 bp · −
rrn16 · PQ059190.1 · 135,164–136,654 bp · −
trnV-GAC · PQ059190.1 · 136,882–136,953 bp · −
ycf15 · PQ059190.1 · 143,207–143,404 bp · −
ycf2 · PQ059190.1 · 143,546–150,355 bp · −
psbK · PQ059190.1 · 7,844–8,029 bp · +
psbI · PQ059190.1 · 8,421–8,531 bp · +
trnG-UCC · PQ059190.1 · 9,424–10,183 bp · +
trnR-UCU · PQ059190.1 · 10,358–10,429 bp · +
trnC-GCA · PQ059190.1 · 28,567–28,637 bp · +
petN · PQ059190.1 · 29,348–29,437 bp · +
trnT-GGU · PQ059190.1 · 32,051–32,122 bp · +
psbD · PQ059190.1 · 33,433–34,494 bp · +
psbC · PQ059190.1 · 34,442–35,863 bp · +
psbZ · PQ059190.1 · 36,501–36,689 bp · +
trnG-GCC · PQ059190.1 · 36,961–37,031 bp · +
trnS-GGA · PQ059190.1 · 45,805–45,891 bp · +
trnL-UAA · PQ059190.1 · 47,882–48,450 bp · +
trnF-GAA · PQ059190.1 · 48,751–48,823 bp · +
trnM-CAU · PQ059190.1 · 52,979–53,051 bp · +
rbcL · PQ059190.1 · 55,900–57,363 bp · +
accD · PQ059190.1 · 58,065–59,531 bp · +
psaI · PQ059190.1 · 60,263–60,373 bp · +
ycf4 · PQ059190.1 · 60,807–61,361 bp · +
cemA · PQ059190.1 · 62,110–62,709 bp · +
petA · PQ059190.1 · 62,916–63,878 bp · +
petL · PQ059190.1 · 66,582–66,677 bp · +
petG · PQ059190.1 · 66,852–66,965 bp · +
psaJ · PQ059190.1 · 67,609–67,806 bp · +
rpl33 · PQ059190.1 · 68,278–68,478 bp · +
rps18 · PQ059190.1 · 68,653–68,958 bp · +
rps12 · PQ059190.1 · 138,531–139,321 bp · +
psbB · PQ059190.1 · 73,046–74,572 bp · +
psbT · PQ059190.1 · 74,764–74,865 bp · +
psbH · PQ059190.1 · 75,174–75,395 bp · +
petB · PQ059190.1 · 75,520–76,888 bp · +
petD · PQ059190.1 · 77,077–78,278 bp · +
ycf2 · PQ059190.1 · 86,691–93,500 bp · +
ycf15 · PQ059190.1 · 93,642–93,839 bp · +
trnV-GAC · PQ059190.1 · 100,093–100,164 bp · +
rrn16 · PQ059190.1 · 100,392–101,882 bp · +
trnI-GAU · PQ059190.1 · 102,181–103,201 bp · +
trnA-UGC · PQ059190.1 · 103,266–104,153 bp · +
rrn23 · PQ059190.1 · 104,323–107,135 bp · +
rrn4.5 · PQ059190.1 · 107,234–107,336 bp · +
rrn5 · PQ059190.1 · 107,584–107,704 bp · +
trnR-ACG · PQ059190.1 · 107,939–108,012 bp · +
rpl32 · PQ059190.1 · 112,464–112,640 bp · +
trnL-UAG · PQ059190.1 · 113,084–113,163 bp · +
ccsA · PQ059190.1 · 113,212–114,240 bp · +
trnN-GUU · PQ059190.1 · 128,416–128,487 bp · +
rps7 · PQ059190.1 · 139,375–139,842 bp · +
ndhB · PQ059190.1 · 140,117–142,328 bp · +
trnL-CAA · PQ059190.1 · 142,871–142,951 bp · +
trnI-CAU · PQ059190.1 · 150,444–150,517 bp · +
rpl23 · PQ059190.1 · 150,677–150,958 bp · +
rpl2 · PQ059190.1 · 150,977–152,459 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria shikokiana
ANNOTATED PLASTOME
PQ059190.1
152,554 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38138 76277 114416 152554 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 353 1411 1059 Locate
trnK-UUU gene − 1644 4231 2588 Locate
matK gene − 1939 3474 1536 Locate
rps16 gene − 5136 6318 1183 Locate
trnQ-UUG gene − 7448 7519 72 Locate
psbK gene + 7844 8029 186 Locate
psbI gene + 8421 8531 111 Locate
trnS-GCU gene − 8649 8736 88 Locate
trnG-UCC gene + 9424 10183 760 Locate
trnR-UCU gene + 10358 10429 72 Locate
atpA gene − 10526 12049 1524 Locate
atpF gene − 12123 13350 1228 Locate
atpH gene − 13719 13964 246 Locate
atpI gene − 14961 15704 744 Locate
rps2 gene − 16051 16761 711 Locate
rpoC2 gene − 16978 21183 4206 Locate
rpoC1 gene − 21338 24163 2826 Locate
rpoB gene − 24190 27402 3213 Locate
trnC-GCA gene + 28567 28637 71 Locate
petN gene + 29348 29437 90 Locate
psbM gene − 30436 30540 105 Locate
trnD-GUC gene − 31066 31139 74 Locate
trnY-GUA gene − 31253 31336 84 Locate
trnE-UUC gene − 31396 31468 73 Locate
trnT-GGU gene + 32051 32122 72 Locate
psbD gene + 33433 34494 1062 Locate
psbC gene + 34442 35863 1422 Locate
trnS-UGA gene − 36099 36190 92 Locate
psbZ gene + 36501 36689 189 Locate
trnG-GCC gene + 36961 37031 71 Locate
trnfM-CAU gene − 37176 37249 74 Locate
rps14 gene − 37399 37701 303 Locate
psaB gene − 37829 40033 2205 Locate
psaA gene − 40059 42311 2253 Locate
ycf3 gene − 42996 44919 1924 Locate
trnS-GGA gene + 45805 45891 87 Locate
rps4 gene − 46177 46782 606 Locate
trnT-UGU gene − 47123 47195 73 Locate
trnL-UAA gene + 47882 48450 569 Locate
trnF-GAA gene + 48751 48823 73 Locate
ndhJ gene − 49472 49948 477 Locate
ndhK gene − 50056 50733 678 Locate
ndhC gene − 50786 51148 363 Locate
trnV-UAC gene − 52146 52798 653 Locate
trnM-CAU gene + 52979 53051 73 Locate
atpE gene − 53261 53662 402 Locate
atpB gene − 53659 55146 1488 Locate
rbcL gene + 55900 57363 1464 Locate
accD gene + 58065 59531 1467 Locate
psaI gene + 60263 60373 111 Locate
ycf4 gene + 60807 61361 555 Locate
cemA gene + 62110 62709 600 Locate
petA gene + 62916 63878 963 Locate
psbJ gene − 64893 65015 123 Locate
psbL gene − 65149 65370 222 Locate
psbF gene − 65289 65408 120 Locate
psbE gene − 65423 65674 252 Locate
petL gene + 66582 66677 96 Locate
petG gene + 66852 66965 114 Locate
trnW-CCA gene − 67084 67157 74 Locate
trnP-UGG gene − 67327 67400 74 Locate
psaJ gene + 67609 67806 198 Locate
rpl33 gene + 68278 68478 201 Locate
rps18 gene + 68653 68958 306 Locate
rpl20 gene − 69195 69581 387 Locate
rps12 gene − 70382 70495 114 Locate
clpP gene − 70638 72571 1934 Locate
psbB gene + 73046 74572 1527 Locate
psbT gene + 74764 74865 102 Locate
psbN gene − 74939 75070 132 Locate
psbH gene + 75174 75395 222 Locate
petB gene + 75520 76888 1369 Locate
petD gene + 77077 78278 1202 Locate
rpoA gene − 78463 79455 993 Locate
rps11 gene − 79527 79943 417 Locate
rpl36 gene − 80045 80158 114 Locate
infA gene − 80254 80487 234 Locate
rps8 gene − 80606 81016 411 Locate
rpl14 gene − 81182 81550 369 Locate
rpl16 gene − 81677 82920 1244 Locate
rps3 gene − 83075 83737 663 Locate
rpl22 gene − 83739 84194 456 Locate
rps19 gene − 84254 84532 279 Locate
rpl2 gene − 84587 86069 1483 Locate
rpl23 gene − 86088 86369 282 Locate
trnI-CAU gene − 86529 86602 74 Locate
ycf2 gene + 86691 93500 6810 Locate
ycf15 gene + 93642 93839 198 Locate
trnL-CAA gene − 94095 94175 81 Locate
ndhB gene − 94718 96929 2212 Locate
rps7 gene − 97204 97671 468 Locate
rps12 gene − 97725 98515 791 Locate
trnV-GAC gene + 100093 100164 72 Locate
rrn16 gene + 100392 101882 1491 Locate
trnI-GAU gene + 102181 103201 1021 Locate
trnA-UGC gene + 103266 104153 888 Locate
rrn23 gene + 104323 107135 2813 Locate
rrn4.5 gene + 107234 107336 103 Locate
rrn5 gene + 107584 107704 121 Locate
trnR-ACG gene + 107939 108012 74 Locate
trnN-GUU gene − 108559 108630 72 Locate
ndhF gene − 109707 111947 2241 Locate
rpl32 gene + 112464 112640 177 Locate
trnL-UAG gene + 113084 113163 80 Locate
ccsA gene + 113212 114240 1029 Locate
ndhD gene − 114479 115981 1503 Locate
psaC gene − 116101 116346 246 Locate
ndhE gene − 116603 116908 306 Locate
ndhG gene − 117139 117669 531 Locate
ndhI gene − 118034 118534 501 Locate
ndhA gene − 118615 120714 2100 Locate
ndhH gene − 120716 121927 1212 Locate
rps15 gene − 122000 122332 333 Locate
ycf1 gene − 122543 128197 5655 Locate
trnN-GUU gene + 128416 128487 72 Locate
trnR-ACG gene − 129034 129107 74 Locate
rrn5 gene − 129342 129462 121 Locate
rrn4.5 gene − 129710 129812 103 Locate
rrn23 gene − 129911 132723 2813 Locate
trnA-UGC gene − 132893 133780 888 Locate
trnI-GAU gene − 133845 134865 1021 Locate
ycf68 gene − 134471 134710 240 Locate
rrn16 gene − 135164 136654 1491 Locate
trnV-GAC gene − 136882 136953 72 Locate
rps12 gene + 138531 139321 791 Locate
rps7 gene + 139375 139842 468 Locate
ndhB gene + 140117 142328 2212 Locate
trnL-CAA gene + 142871 142951 81 Locate
ycf15 gene − 143207 143404 198 Locate
ycf2 gene − 143546 150355 6810 Locate
trnI-CAU gene + 150444 150517 74 Locate
rpl23 gene + 150677 150958 282 Locate
rpl2 gene + 150977 152459 1483 Locate
Status Available
Accession PQ059190.1
Length 152,554 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources