Scutellaria sieberi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059342.1 · 4–77 bp · −
psbA · PQ059342.1 · 395–1,453 bp · −
trnK-UUU · PQ059342.1 · 1,695–4,288 bp · −
matK · PQ059342.1 · 1,984–3,528 bp · −
rps16 · PQ059342.1 · 5,200–6,372 bp · −
trnQ-UUG · PQ059342.1 · 7,484–7,555 bp · −
trnS-GCU · PQ059342.1 · 8,673–8,760 bp · −
atpA · PQ059342.1 · 10,544–12,067 bp · −
atpF · PQ059342.1 · 12,152–13,380 bp · −
atpH · PQ059342.1 · 13,752–13,997 bp · −
atpI · PQ059342.1 · 14,991–15,734 bp · −
rps2 · PQ059342.1 · 16,082–16,792 bp · −
rpoC2 · PQ059342.1 · 17,010–21,209 bp · −
rpoC1 · PQ059342.1 · 21,364–24,182 bp · −
rpoB · PQ059342.1 · 24,209–27,421 bp · −
psbM · PQ059342.1 · 30,501–30,605 bp · −
trnD-GUC · PQ059342.1 · 31,137–31,210 bp · −
trnY-GUA · PQ059342.1 · 31,324–31,407 bp · −
trnE-UUC · PQ059342.1 · 31,467–31,539 bp · −
trnS-UGA · PQ059342.1 · 36,160–36,251 bp · −
trnfM-CAU · PQ059342.1 · 37,247–37,320 bp · −
rps14 · PQ059342.1 · 37,470–37,772 bp · −
psaB · PQ059342.1 · 37,903–40,107 bp · −
psaA · PQ059342.1 · 40,133–42,385 bp · −
ycf3 · PQ059342.1 · 43,087–45,013 bp · −
rps4 · PQ059342.1 · 46,258–46,863 bp · −
trnT-UGU · PQ059342.1 · 47,204–47,276 bp · −
ndhJ · PQ059342.1 · 49,538–50,014 bp · −
ndhK · PQ059342.1 · 50,119–50,796 bp · −
ndhC · PQ059342.1 · 50,849–51,211 bp · −
trnV-UAC · PQ059342.1 · 52,208–52,866 bp · −
atpE · PQ059342.1 · 53,328–53,729 bp · −
atpB · PQ059342.1 · 53,726–55,222 bp · −
psbJ · PQ059342.1 · 64,390–64,512 bp · −
psbL · PQ059342.1 · 64,646–64,867 bp · −
psbF · PQ059342.1 · 64,786–64,905 bp · −
psbE · PQ059342.1 · 64,920–65,171 bp · −
trnW-CCA · PQ059342.1 · 66,587–66,660 bp · −
trnP-UGG · PQ059342.1 · 66,830–66,903 bp · −
rpl20 · PQ059342.1 · 68,705–69,091 bp · −
rps12 · PQ059342.1 · 69,887–70,000 bp · −
rps12 · PQ059342.1 · 97,195–97,985 bp · −
clpP · PQ059342.1 · 70,142–72,078 bp · −
psbN · PQ059342.1 · 74,405–74,536 bp · −
rpoA · PQ059342.1 · 77,917–78,930 bp · −
rps11 · PQ059342.1 · 79,002–79,418 bp · −
rpl36 · PQ059342.1 · 79,520–79,633 bp · −
infA · PQ059342.1 · 79,729–79,962 bp · −
rps8 · PQ059342.1 · 80,085–80,495 bp · −
rpl14 · PQ059342.1 · 80,659–81,027 bp · −
rpl16 · PQ059342.1 · 81,154–82,384 bp · −
rps3 · PQ059342.1 · 82,539–83,201 bp · −
rpl22 · PQ059342.1 · 83,203–83,658 bp · −
rps19 · PQ059342.1 · 83,718–83,996 bp · −
rpl2 · PQ059342.1 · 84,052–85,534 bp · −
rpl23 · PQ059342.1 · 85,553–85,834 bp · −
trnI-CAU · PQ059342.1 · 85,994–86,067 bp · −
trnL-CAA · PQ059342.1 · 93,565–93,645 bp · −
ndhB · PQ059342.1 · 94,188–96,345 bp · −
rps7 · PQ059342.1 · 96,674–97,141 bp · −
trnN-GUU · PQ059342.1 · 108,022–108,093 bp · −
ndhF · PQ059342.1 · 109,170–111,410 bp · −
ndhD · PQ059342.1 · 113,913–115,415 bp · −
psaC · PQ059342.1 · 115,549–115,794 bp · −
ndhE · PQ059342.1 · 116,050–116,355 bp · −
ndhG · PQ059342.1 · 116,579–117,109 bp · −
ndhI · PQ059342.1 · 117,458–117,958 bp · −
ndhA · PQ059342.1 · 118,039–120,153 bp · −
ndhH · PQ059342.1 · 120,155–121,336 bp · −
rps15 · PQ059342.1 · 121,433–121,705 bp · −
ycf1 · PQ059342.1 · 121,974–127,640 bp · −
trnR-ACG · PQ059342.1 · 128,486–128,559 bp · −
rrn5 · PQ059342.1 · 128,794–128,914 bp · −
rrn4.5 · PQ059342.1 · 129,162–129,264 bp · −
rrn23 · PQ059342.1 · 129,363–132,174 bp · −
trnA-UGC · PQ059342.1 · 132,344–133,228 bp · −
trnI-GAU · PQ059342.1 · 133,293–134,311 bp · −
ycf68 · PQ059342.1 · 133,863–134,156 bp · −
rrn16 · PQ059342.1 · 134,610–136,100 bp · −
trnV-GAC · PQ059342.1 · 136,323–136,394 bp · −
ycf15 · PQ059342.1 · 142,648–142,845 bp · −
ycf2 · PQ059342.1 · 142,987–149,796 bp · −
psbK · PQ059342.1 · 7,880–8,065 bp · +
psbI · PQ059342.1 · 8,463–8,573 bp · +
trnG-UCC · PQ059342.1 · 9,456–10,210 bp · +
trnR-UCU · PQ059342.1 · 10,376–10,447 bp · +
trnC-GCA · PQ059342.1 · 28,598–28,668 bp · +
petN · PQ059342.1 · 29,404–29,493 bp · +
trnT-GGU · PQ059342.1 · 32,111–32,182 bp · +
psbD · PQ059342.1 · 33,495–34,556 bp · +
psbC · PQ059342.1 · 34,504–35,925 bp · +
psbZ · PQ059342.1 · 36,571–36,759 bp · +
trnG-GCC · PQ059342.1 · 37,032–37,102 bp · +
trnS-GGA · PQ059342.1 · 45,887–45,973 bp · +
trnL-UAA · PQ059342.1 · 47,944–48,510 bp · +
trnF-GAA · PQ059342.1 · 48,816–48,888 bp · +
trnM-CAU · PQ059342.1 · 53,047–53,119 bp · +
rbcL · PQ059342.1 · 55,971–57,434 bp · +
accD · PQ059342.1 · 58,160–59,650 bp · +
psaI · PQ059342.1 · 59,888–59,998 bp · +
ycf4 · PQ059342.1 · 60,432–60,986 bp · +
cemA · PQ059342.1 · 61,600–62,199 bp · +
petA · PQ059342.1 · 62,406–63,368 bp · +
petL · PQ059342.1 · 66,094–66,189 bp · +
petG · PQ059342.1 · 66,365–66,478 bp · +
psaJ · PQ059342.1 · 67,176–67,310 bp · +
rpl33 · PQ059342.1 · 67,784–67,984 bp · +
rps18 · PQ059342.1 · 68,159–68,464 bp · +
rps12 · PQ059342.1 · 137,967–138,757 bp · +
psbB · PQ059342.1 · 72,532–74,058 bp · +
psbT · PQ059342.1 · 74,237–74,344 bp · +
psbH · PQ059342.1 · 74,640–74,861 bp · +
petB · PQ059342.1 · 74,986–76,354 bp · +
petD · PQ059342.1 · 76,543–77,754 bp · +
ycf2 · PQ059342.1 · 86,156–92,965 bp · +
ycf15 · PQ059342.1 · 93,107–93,304 bp · +
trnV-GAC · PQ059342.1 · 99,558–99,629 bp · +
rrn16 · PQ059342.1 · 99,852–101,342 bp · +
trnI-GAU · PQ059342.1 · 101,641–102,659 bp · +
trnA-UGC · PQ059342.1 · 102,724–103,608 bp · +
rrn23 · PQ059342.1 · 103,778–106,589 bp · +
rrn4.5 · PQ059342.1 · 106,688–106,790 bp · +
rrn5 · PQ059342.1 · 107,038–107,158 bp · +
trnR-ACG · PQ059342.1 · 107,393–107,466 bp · +
rpl32 · PQ059342.1 · 111,925–112,101 bp · +
trnL-UAG · PQ059342.1 · 112,535–112,614 bp · +
ccsA · PQ059342.1 · 112,701–113,675 bp · +
trnN-GUU · PQ059342.1 · 127,859–127,930 bp · +
rps7 · PQ059342.1 · 138,811–139,278 bp · +
ndhB · PQ059342.1 · 139,607–141,764 bp · +
trnL-CAA · PQ059342.1 · 142,307–142,387 bp · +
trnI-CAU · PQ059342.1 · 149,885–149,958 bp · +
rpl23 · PQ059342.1 · 150,118–150,399 bp · +
rpl2 · PQ059342.1 · 150,418–151,900 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria sieberi
ANNOTATED PLASTOME
PQ059342.1
151,996 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37999 75998 113997 151996 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1695 4288 2594 Locate
matK gene − 1984 3528 1545 Locate
rps16 gene − 5200 6372 1173 Locate
trnQ-UUG gene − 7484 7555 72 Locate
psbK gene + 7880 8065 186 Locate
psbI gene + 8463 8573 111 Locate
trnS-GCU gene − 8673 8760 88 Locate
trnG-UCC gene + 9456 10210 755 Locate
trnR-UCU gene + 10376 10447 72 Locate
atpA gene − 10544 12067 1524 Locate
atpF gene − 12152 13380 1229 Locate
atpH gene − 13752 13997 246 Locate
atpI gene − 14991 15734 744 Locate
rps2 gene − 16082 16792 711 Locate
rpoC2 gene − 17010 21209 4200 Locate
rpoC1 gene − 21364 24182 2819 Locate
rpoB gene − 24209 27421 3213 Locate
trnC-GCA gene + 28598 28668 71 Locate
petN gene + 29404 29493 90 Locate
psbM gene − 30501 30605 105 Locate
trnD-GUC gene − 31137 31210 74 Locate
trnY-GUA gene − 31324 31407 84 Locate
trnE-UUC gene − 31467 31539 73 Locate
trnT-GGU gene + 32111 32182 72 Locate
psbD gene + 33495 34556 1062 Locate
psbC gene + 34504 35925 1422 Locate
trnS-UGA gene − 36160 36251 92 Locate
psbZ gene + 36571 36759 189 Locate
trnG-GCC gene + 37032 37102 71 Locate
trnfM-CAU gene − 37247 37320 74 Locate
rps14 gene − 37470 37772 303 Locate
psaB gene − 37903 40107 2205 Locate
psaA gene − 40133 42385 2253 Locate
ycf3 gene − 43087 45013 1927 Locate
trnS-GGA gene + 45887 45973 87 Locate
rps4 gene − 46258 46863 606 Locate
trnT-UGU gene − 47204 47276 73 Locate
trnL-UAA gene + 47944 48510 567 Locate
trnF-GAA gene + 48816 48888 73 Locate
ndhJ gene − 49538 50014 477 Locate
ndhK gene − 50119 50796 678 Locate
ndhC gene − 50849 51211 363 Locate
trnV-UAC gene − 52208 52866 659 Locate
trnM-CAU gene + 53047 53119 73 Locate
atpE gene − 53328 53729 402 Locate
atpB gene − 53726 55222 1497 Locate
rbcL gene + 55971 57434 1464 Locate
accD gene + 58160 59650 1491 Locate
psaI gene + 59888 59998 111 Locate
ycf4 gene + 60432 60986 555 Locate
cemA gene + 61600 62199 600 Locate
petA gene + 62406 63368 963 Locate
psbJ gene − 64390 64512 123 Locate
psbL gene − 64646 64867 222 Locate
psbF gene − 64786 64905 120 Locate
psbE gene − 64920 65171 252 Locate
petL gene + 66094 66189 96 Locate
petG gene + 66365 66478 114 Locate
trnW-CCA gene − 66587 66660 74 Locate
trnP-UGG gene − 66830 66903 74 Locate
psaJ gene + 67176 67310 135 Locate
rpl33 gene + 67784 67984 201 Locate
rps18 gene + 68159 68464 306 Locate
rpl20 gene − 68705 69091 387 Locate
rps12 gene − 69887 70000 114 Locate
clpP gene − 70142 72078 1937 Locate
psbB gene + 72532 74058 1527 Locate
psbT gene + 74237 74344 108 Locate
psbN gene − 74405 74536 132 Locate
psbH gene + 74640 74861 222 Locate
petB gene + 74986 76354 1369 Locate
petD gene + 76543 77754 1212 Locate
rpoA gene − 77917 78930 1014 Locate
rps11 gene − 79002 79418 417 Locate
rpl36 gene − 79520 79633 114 Locate
infA gene − 79729 79962 234 Locate
rps8 gene − 80085 80495 411 Locate
rpl14 gene − 80659 81027 369 Locate
rpl16 gene − 81154 82384 1231 Locate
rps3 gene − 82539 83201 663 Locate
rpl22 gene − 83203 83658 456 Locate
rps19 gene − 83718 83996 279 Locate
rpl2 gene − 84052 85534 1483 Locate
rpl23 gene − 85553 85834 282 Locate
trnI-CAU gene − 85994 86067 74 Locate
ycf2 gene + 86156 92965 6810 Locate
ycf15 gene + 93107 93304 198 Locate
trnL-CAA gene − 93565 93645 81 Locate
ndhB gene − 94188 96345 2158 Locate
rps7 gene − 96674 97141 468 Locate
rps12 gene − 97195 97985 791 Locate
trnV-GAC gene + 99558 99629 72 Locate
rrn16 gene + 99852 101342 1491 Locate
trnI-GAU gene + 101641 102659 1019 Locate
trnA-UGC gene + 102724 103608 885 Locate
rrn23 gene + 103778 106589 2812 Locate
rrn4.5 gene + 106688 106790 103 Locate
rrn5 gene + 107038 107158 121 Locate
trnR-ACG gene + 107393 107466 74 Locate
trnN-GUU gene − 108022 108093 72 Locate
ndhF gene − 109170 111410 2241 Locate
rpl32 gene + 111925 112101 177 Locate
trnL-UAG gene + 112535 112614 80 Locate
ccsA gene + 112701 113675 975 Locate
ndhD gene − 113913 115415 1503 Locate
psaC gene − 115549 115794 246 Locate
ndhE gene − 116050 116355 306 Locate
ndhG gene − 116579 117109 531 Locate
ndhI gene − 117458 117958 501 Locate
ndhA gene − 118039 120153 2115 Locate
ndhH gene − 120155 121336 1182 Locate
rps15 gene − 121433 121705 273 Locate
ycf1 gene − 121974 127640 5667 Locate
trnN-GUU gene + 127859 127930 72 Locate
trnR-ACG gene − 128486 128559 74 Locate
rrn5 gene − 128794 128914 121 Locate
rrn4.5 gene − 129162 129264 103 Locate
rrn23 gene − 129363 132174 2812 Locate
trnA-UGC gene − 132344 133228 885 Locate
trnI-GAU gene − 133293 134311 1019 Locate
ycf68 gene − 133863 134156 294 Locate
rrn16 gene − 134610 136100 1491 Locate
trnV-GAC gene − 136323 136394 72 Locate
rps12 gene + 137967 138757 791 Locate
rps7 gene + 138811 139278 468 Locate
ndhB gene + 139607 141764 2158 Locate
trnL-CAA gene + 142307 142387 81 Locate
ycf15 gene − 142648 142845 198 Locate
ycf2 gene − 142987 149796 6810 Locate
trnI-CAU gene + 149885 149958 74 Locate
rpl23 gene + 150118 150399 282 Locate
rpl2 gene + 150418 151900 1483 Locate
Status Available
Accession PQ059342.1
Length 151,996 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources