Scutellaria sieversii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059345.1 · 4–77 bp · −
psbA · PQ059345.1 · 374–1,432 bp · −
trnK-UUU · PQ059345.1 · 1,674–4,255 bp · −
matK · PQ059345.1 · 1,964–3,490 bp · −
rps16 · PQ059345.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ059345.1 · 7,061–7,132 bp · −
trnS-GCU · PQ059345.1 · 8,262–8,349 bp · −
atpA · PQ059345.1 · 10,147–11,670 bp · −
atpF · PQ059345.1 · 11,752–12,980 bp · −
atpH · PQ059345.1 · 13,335–13,580 bp · −
atpI · PQ059345.1 · 14,568–15,311 bp · −
rps2 · PQ059345.1 · 15,657–16,367 bp · −
rpoC2 · PQ059345.1 · 16,582–20,787 bp · −
rpoC1 · PQ059345.1 · 20,942–23,778 bp · −
rpoB · PQ059345.1 · 23,805–27,017 bp · −
psbM · PQ059345.1 · 30,095–30,199 bp · −
trnD-GUC · PQ059345.1 · 30,725–30,798 bp · −
trnY-GUA · PQ059345.1 · 30,912–30,995 bp · −
trnE-UUC · PQ059345.1 · 31,055–31,127 bp · −
trnS-UGA · PQ059345.1 · 35,744–35,835 bp · −
trnfM-CAU · PQ059345.1 · 36,835–36,908 bp · −
rps14 · PQ059345.1 · 37,063–37,365 bp · −
psaB · PQ059345.1 · 37,494–39,698 bp · −
psaA · PQ059345.1 · 39,724–41,976 bp · −
ycf3 · PQ059345.1 · 42,669–44,592 bp · −
rps4 · PQ059345.1 · 45,837–46,442 bp · −
trnT-UGU · PQ059345.1 · 46,792–46,864 bp · −
ndhJ · PQ059345.1 · 49,125–49,601 bp · −
ndhK · PQ059345.1 · 49,710–50,471 bp · −
ndhC · PQ059345.1 · 50,441–50,803 bp · −
trnV-UAC · PQ059345.1 · 51,789–52,441 bp · −
atpE · PQ059345.1 · 52,896–53,297 bp · −
atpB · PQ059345.1 · 53,294–54,790 bp · −
psbJ · PQ059345.1 · 64,515–64,637 bp · −
psbL · PQ059345.1 · 64,771–64,887 bp · −
psbF · PQ059345.1 · 64,911–65,030 bp · −
psbE · PQ059345.1 · 65,045–65,296 bp · −
trnW-CCA · PQ059345.1 · 66,677–66,750 bp · −
trnP-UGG · PQ059345.1 · 66,920–66,993 bp · −
rpl20 · PQ059345.1 · 68,790–69,176 bp · −
rps12 · PQ059345.1 · 69,959–70,084 bp · −
rps12 · PQ059345.1 · 97,231–98,021 bp · −
clpP · PQ059345.1 · 70,226–72,153 bp · −
psbN · PQ059345.1 · 74,491–74,622 bp · −
rpoA · PQ059345.1 · 78,186–78,986 bp · −
rps11 · PQ059345.1 · 79,058–79,474 bp · −
rpl36 · PQ059345.1 · 79,576–79,689 bp · −
infA · PQ059345.1 · 79,784–80,017 bp · −
rps8 · PQ059345.1 · 80,141–80,551 bp · −
rpl14 · PQ059345.1 · 80,703–81,071 bp · −
rpl16 · PQ059345.1 · 81,198–82,431 bp · −
rps3 · PQ059345.1 · 82,587–83,249 bp · −
rpl22 · PQ059345.1 · 83,251–83,706 bp · −
rps19 · PQ059345.1 · 83,766–84,044 bp · −
rpl2 · PQ059345.1 · 84,099–85,580 bp · −
rpl23 · PQ059345.1 · 85,599–85,880 bp · −
trnI-CAU · PQ059345.1 · 86,040–86,113 bp · −
trnL-CAA · PQ059345.1 · 93,601–93,681 bp · −
ndhB · PQ059345.1 · 94,224–96,381 bp · −
rps7 · PQ059345.1 · 96,710–97,177 bp · −
trnN-GUU · PQ059345.1 · 108,056–108,127 bp · −
ndhF · PQ059345.1 · 109,184–111,445 bp · −
ndhD · PQ059345.1 · 113,808–115,310 bp · −
psaC · PQ059345.1 · 115,438–115,683 bp · −
ndhE · PQ059345.1 · 115,939–116,244 bp · −
ndhG · PQ059345.1 · 116,461–116,991 bp · −
ndhI · PQ059345.1 · 117,358–117,858 bp · −
ndhA · PQ059345.1 · 117,944–120,065 bp · −
ndhH · PQ059345.1 · 120,067–121,248 bp · −
rps15 · PQ059345.1 · 121,345–121,617 bp · −
ycf1 · PQ059345.1 · 121,811–127,447 bp · −
trnR-ACG · PQ059345.1 · 128,286–128,359 bp · −
rrn5 · PQ059345.1 · 128,594–128,714 bp · −
rrn4.5 · PQ059345.1 · 128,962–129,064 bp · −
rrn23 · PQ059345.1 · 129,163–131,974 bp · −
trnA-UGC · PQ059345.1 · 132,144–133,028 bp · −
trnI-GAU · PQ059345.1 · 133,093–134,113 bp · −
ycf68 · PQ059345.1 · 133,665–133,958 bp · −
rrn16 · PQ059345.1 · 134,412–135,902 bp · −
trnV-GAC · PQ059345.1 · 136,129–136,200 bp · −
ycf15 · PQ059345.1 · 142,452–142,649 bp · −
ycf2 · PQ059345.1 · 142,791–149,591 bp · −
psbK · PQ059345.1 · 7,457–7,642 bp · +
psbI · PQ059345.1 · 8,033–8,143 bp · +
trnG-UCC · PQ059345.1 · 9,048–9,804 bp · +
trnR-UCU · PQ059345.1 · 9,979–10,050 bp · +
trnC-GCA · PQ059345.1 · 28,178–28,248 bp · +
petN · PQ059345.1 · 28,963–29,052 bp · +
trnT-GGU · PQ059345.1 · 31,703–31,774 bp · +
psbD · PQ059345.1 · 33,078–34,139 bp · +
psbC · PQ059345.1 · 34,087–35,508 bp · +
psbZ · PQ059345.1 · 36,151–36,339 bp · +
trnG-GCC · PQ059345.1 · 36,617–36,687 bp · +
trnS-GGA · PQ059345.1 · 45,475–45,561 bp · +
trnL-UAA · PQ059345.1 · 47,545–48,104 bp · +
trnF-GAA · PQ059345.1 · 48,406–48,478 bp · +
trnM-CAU · PQ059345.1 · 52,630–52,702 bp · +
rbcL · PQ059345.1 · 55,541–57,004 bp · +
accD · PQ059345.1 · 57,715–59,193 bp · +
psaI · PQ059345.1 · 59,900–60,010 bp · +
ycf4 · PQ059345.1 · 60,444–60,998 bp · +
cemA · PQ059345.1 · 61,747–62,346 bp · +
petA · PQ059345.1 · 62,553–63,515 bp · +
petL · PQ059345.1 · 66,174–66,269 bp · +
petG · PQ059345.1 · 66,445–66,558 bp · +
psaJ · PQ059345.1 · 67,202–67,399 bp · +
rpl33 · PQ059345.1 · 67,875–68,075 bp · +
rps18 · PQ059345.1 · 68,250–68,555 bp · +
rps12 · PQ059345.1 · 137,772–138,562 bp · +
psbB · PQ059345.1 · 72,605–74,131 bp · +
psbT · PQ059345.1 · 74,323–74,430 bp · +
psbH · PQ059345.1 · 74,726–74,947 bp · +
petB · PQ059345.1 · 75,072–76,442 bp · +
petD · PQ059345.1 · 76,625–77,831 bp · +
ycf2 · PQ059345.1 · 86,202–93,002 bp · +
ycf15 · PQ059345.1 · 93,144–93,341 bp · +
trnV-GAC · PQ059345.1 · 99,593–99,664 bp · +
rrn16 · PQ059345.1 · 99,891–101,381 bp · +
trnI-GAU · PQ059345.1 · 101,680–102,700 bp · +
trnA-UGC · PQ059345.1 · 102,765–103,649 bp · +
rrn23 · PQ059345.1 · 103,819–106,630 bp · +
rrn4.5 · PQ059345.1 · 106,729–106,831 bp · +
rrn5 · PQ059345.1 · 107,079–107,199 bp · +
trnR-ACG · PQ059345.1 · 107,434–107,507 bp · +
rpl32 · PQ059345.1 · 111,773–111,949 bp · +
trnL-UAG · PQ059345.1 · 112,396–112,475 bp · +
ccsA · PQ059345.1 · 112,577–113,551 bp · +
trnN-GUU · PQ059345.1 · 127,666–127,737 bp · +
rps7 · PQ059345.1 · 138,616–139,083 bp · +
ndhB · PQ059345.1 · 139,412–141,569 bp · +
trnL-CAA · PQ059345.1 · 142,112–142,192 bp · +
trnI-CAU · PQ059345.1 · 149,680–149,753 bp · +
rpl23 · PQ059345.1 · 149,913–150,194 bp · +
rpl2 · PQ059345.1 · 150,213–151,694 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria sieversii
ANNOTATED PLASTOME
PQ059345.1
151,794 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37948 75897 113846 151794 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8033 8143 111 Locate
trnS-GCU gene − 8262 8349 88 Locate
trnG-UCC gene + 9048 9804 757 Locate
trnR-UCU gene + 9979 10050 72 Locate
atpA gene − 10147 11670 1524 Locate
atpF gene − 11752 12980 1229 Locate
atpH gene − 13335 13580 246 Locate
atpI gene − 14568 15311 744 Locate
rps2 gene − 15657 16367 711 Locate
rpoC2 gene − 16582 20787 4206 Locate
rpoC1 gene − 20942 23778 2837 Locate
rpoB gene − 23805 27017 3213 Locate
trnC-GCA gene + 28178 28248 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30095 30199 105 Locate
trnD-GUC gene − 30725 30798 74 Locate
trnY-GUA gene − 30912 30995 84 Locate
trnE-UUC gene − 31055 31127 73 Locate
trnT-GGU gene + 31703 31774 72 Locate
psbD gene + 33078 34139 1062 Locate
psbC gene + 34087 35508 1422 Locate
trnS-UGA gene − 35744 35835 92 Locate
psbZ gene + 36151 36339 189 Locate
trnG-GCC gene + 36617 36687 71 Locate
trnfM-CAU gene − 36835 36908 74 Locate
rps14 gene − 37063 37365 303 Locate
psaB gene − 37494 39698 2205 Locate
psaA gene − 39724 41976 2253 Locate
ycf3 gene − 42669 44592 1924 Locate
trnS-GGA gene + 45475 45561 87 Locate
rps4 gene − 45837 46442 606 Locate
trnT-UGU gene − 46792 46864 73 Locate
trnL-UAA gene + 47545 48104 560 Locate
trnF-GAA gene + 48406 48478 73 Locate
ndhJ gene − 49125 49601 477 Locate
ndhK gene − 49710 50471 762 Locate
ndhC gene − 50441 50803 363 Locate
trnV-UAC gene − 51789 52441 653 Locate
trnM-CAU gene + 52630 52702 73 Locate
atpE gene − 52896 53297 402 Locate
atpB gene − 53294 54790 1497 Locate
rbcL gene + 55541 57004 1464 Locate
accD gene + 57715 59193 1479 Locate
psaI gene + 59900 60010 111 Locate
ycf4 gene + 60444 60998 555 Locate
cemA gene + 61747 62346 600 Locate
petA gene + 62553 63515 963 Locate
psbJ gene − 64515 64637 123 Locate
psbL gene − 64771 64887 117 Locate
psbF gene − 64911 65030 120 Locate
psbE gene − 65045 65296 252 Locate
petL gene + 66174 66269 96 Locate
petG gene + 66445 66558 114 Locate
trnW-CCA gene − 66677 66750 74 Locate
trnP-UGG gene − 66920 66993 74 Locate
psaJ gene + 67202 67399 198 Locate
rpl33 gene + 67875 68075 201 Locate
rps18 gene + 68250 68555 306 Locate
rpl20 gene − 68790 69176 387 Locate
rps12 gene − 69959 70084 126 Locate
clpP gene − 70226 72153 1928 Locate
psbB gene + 72605 74131 1527 Locate
psbT gene + 74323 74430 108 Locate
psbN gene − 74491 74622 132 Locate
psbH gene + 74726 74947 222 Locate
petB gene + 75072 76442 1371 Locate
petD gene + 76625 77831 1207 Locate
rpoA gene − 78186 78986 801 Locate
rps11 gene − 79058 79474 417 Locate
rpl36 gene − 79576 79689 114 Locate
infA gene − 79784 80017 234 Locate
rps8 gene − 80141 80551 411 Locate
rpl14 gene − 80703 81071 369 Locate
rpl16 gene − 81198 82431 1234 Locate
rps3 gene − 82587 83249 663 Locate
rpl22 gene − 83251 83706 456 Locate
rps19 gene − 83766 84044 279 Locate
rpl2 gene − 84099 85580 1482 Locate
rpl23 gene − 85599 85880 282 Locate
trnI-CAU gene − 86040 86113 74 Locate
ycf2 gene + 86202 93002 6801 Locate
ycf15 gene + 93144 93341 198 Locate
trnL-CAA gene − 93601 93681 81 Locate
ndhB gene − 94224 96381 2158 Locate
rps7 gene − 96710 97177 468 Locate
rps12 gene − 97231 98021 791 Locate
trnV-GAC gene + 99593 99664 72 Locate
rrn16 gene + 99891 101381 1491 Locate
trnI-GAU gene + 101680 102700 1021 Locate
trnA-UGC gene + 102765 103649 885 Locate
rrn23 gene + 103819 106630 2812 Locate
rrn4.5 gene + 106729 106831 103 Locate
rrn5 gene + 107079 107199 121 Locate
trnR-ACG gene + 107434 107507 74 Locate
trnN-GUU gene − 108056 108127 72 Locate
ndhF gene − 109184 111445 2262 Locate
rpl32 gene + 111773 111949 177 Locate
trnL-UAG gene + 112396 112475 80 Locate
ccsA gene + 112577 113551 975 Locate
ndhD gene − 113808 115310 1503 Locate
psaC gene − 115438 115683 246 Locate
ndhE gene − 115939 116244 306 Locate
ndhG gene − 116461 116991 531 Locate
ndhI gene − 117358 117858 501 Locate
ndhA gene − 117944 120065 2122 Locate
ndhH gene − 120067 121248 1182 Locate
rps15 gene − 121345 121617 273 Locate
ycf1 gene − 121811 127447 5637 Locate
trnN-GUU gene + 127666 127737 72 Locate
trnR-ACG gene − 128286 128359 74 Locate
rrn5 gene − 128594 128714 121 Locate
rrn4.5 gene − 128962 129064 103 Locate
rrn23 gene − 129163 131974 2812 Locate
trnA-UGC gene − 132144 133028 885 Locate
trnI-GAU gene − 133093 134113 1021 Locate
ycf68 gene − 133665 133958 294 Locate
rrn16 gene − 134412 135902 1491 Locate
trnV-GAC gene − 136129 136200 72 Locate
rps12 gene + 137772 138562 791 Locate
rps7 gene + 138616 139083 468 Locate
ndhB gene + 139412 141569 2158 Locate
trnL-CAA gene + 142112 142192 81 Locate
ycf15 gene − 142452 142649 198 Locate
ycf2 gene − 142791 149591 6801 Locate
trnI-CAU gene + 149680 149753 74 Locate
rpl23 gene + 149913 150194 282 Locate
rpl2 gene + 150213 151694 1482 Locate
Status Available
Accession PQ059345.1
Length 151,794 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources