Scutellaria siphocampyloides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420977.1 · 3–76 bp · −
psbA · MW420977.1 · 363–1,421 bp · −
trnK-UUU · MW420977.1 · 1,658–4,246 bp · −
matK · MW420977.1 · 1,949–3,484 bp · −
rps16 · MW420977.1 · 5,141–6,310 bp · −
trnQ-UUC · MW420977.1 · 7,436–7,507 bp · −
trnS-GCU · MW420977.1 · 8,635–8,722 bp · −
atpA · MW420977.1 · 10,503–12,026 bp · −
atpF · MW420977.1 · 12,100–13,334 bp · −
atpH · MW420977.1 · 13,700–13,945 bp · −
atpI · MW420977.1 · 14,941–15,684 bp · −
rps2 · MW420977.1 · 16,035–16,745 bp · −
rpoC2 · MW420977.1 · 16,962–21,167 bp · −
rpoC1 · MW420977.1 · 21,322–24,159 bp · −
rpoB · MW420977.1 · 24,186–27,398 bp · −
psbM · MW420977.1 · 30,435–30,539 bp · −
trnD-GUC · MW420977.1 · 31,065–31,138 bp · −
trnY-GUA · MW420977.1 · 31,252–31,335 bp · −
trnE-UUC · MW420977.1 · 31,395–31,467 bp · −
trnS-UCA · MW420977.1 · 36,098–36,190 bp · −
trnfM-CAU · MW420977.1 · 37,195–37,268 bp · −
rps14 · MW420977.1 · 37,418–37,720 bp · −
psaB · MW420977.1 · 37,846–40,050 bp · −
psaA · MW420977.1 · 40,076–42,328 bp · −
ycf3 · MW420977.1 · 43,003–44,916 bp · −
rps4 · MW420977.1 · 46,176–46,781 bp · −
trnT-UGU · MW420977.1 · 47,120–47,192 bp · −
ndhJ · MW420977.1 · 49,462–49,938 bp · −
ndhK · MW420977.1 · 50,047–50,724 bp · −
ndhC · MW420977.1 · 50,777–51,139 bp · −
trnV-UAC · MW420977.1 · 52,130–52,782 bp · −
atpE · MW420977.1 · 53,245–53,646 bp · −
atpB · MW420977.1 · 53,643–55,130 bp · −
pabJ · MW420977.1 · 64,846–64,968 bp · −
psbL · MW420977.1 · 65,102–65,218 bp · −
psbF · MW420977.1 · 65,242–65,361 bp · −
psbE · MW420977.1 · 65,376–65,627 bp · −
trnW-CCA · MW420977.1 · 67,038–67,111 bp · −
trnP-UGG · MW420977.1 · 67,281–67,354 bp · −
rpl20 · MW420977.1 · 69,150–69,536 bp · −
rps12 · MW420977.1 · 70,321–70,446 bp · −
rps12 · MW420977.1 · 97,685–98,475 bp · −
clpP · MW420977.1 · 70,589–72,520 bp · −
psbN · MW420977.1 · 74,892–75,023 bp · −
rpoA · MW420977.1 · 78,394–79,407 bp · −
rps11 · MW420977.1 · 79,479–79,895 bp · −
rpl36 · MW420977.1 · 79,997–80,110 bp · −
infA · MW420977.1 · 80,206–80,439 bp · −
rps8 · MW420977.1 · 80,560–80,970 bp · −
rpl14 · MW420977.1 · 81,141–81,509 bp · −
rpl16 · MW420977.1 · 81,636–82,880 bp · −
rps3 · MW420977.1 · 83,035–83,697 bp · −
rpl22 · MW420977.1 · 83,699–84,154 bp · −
rps19 · MW420977.1 · 84,214–84,492 bp · −
rpl2 · MW420977.1 · 84,547–86,029 bp · −
rpl23 · MW420977.1 · 86,048–86,329 bp · −
trnI-CAU · MW420977.1 · 86,489–86,562 bp · −
trnL-CAA · MW420977.1 · 94,055–94,135 bp · −
ndhB · MW420977.1 · 94,678–96,889 bp · −
rps7 · MW420977.1 · 97,164–97,631 bp · −
ndhF · MW420977.1 · 109,668–111,908 bp · −
ndhD · MW420977.1 · 114,419–115,939 bp · −
psaC · MW420977.1 · 116,041–116,286 bp · −
ndhE · MW420977.1 · 116,543–116,848 bp · −
ndhG · MW420977.1 · 117,058–117,588 bp · −
ndhI · MW420977.1 · 117,953–118,453 bp · −
ndhA · MW420977.1 · 118,534–120,626 bp · −
ndhH · MW420977.1 · 120,628–121,809 bp · −
rps15 · MW420977.1 · 121,912–122,184 bp · −
ycf1 · MW420977.1 · 122,452–128,064 bp · −
trnR-ACG · MW420977.1 · 129,013–129,086 bp · −
rrn5 · MW420977.1 · 129,321–129,441 bp · −
rrn4.5 · MW420977.1 · 129,689–129,791 bp · −
rrn23 · MW420977.1 · 129,890–132,702 bp · −
trnA-UGC · MW420977.1 · 132,872–133,753 bp · −
trnI-GAU · MW420977.1 · 133,819–134,838 bp · −
rrn16 · MW420977.1 · 135,137–136,627 bp · −
trnV-GAC · MW420977.1 · 136,855–136,926 bp · −
ycf15 · MW420977.1 · 143,186–143,383 bp · −
ycf2 · MW420977.1 · 143,525–150,334 bp · −
psbK · MW420977.1 · 7,832–8,017 bp · +
psbI · MW420977.1 · 8,408–8,518 bp · +
trnG-CGA · MW420977.1 · 9,401–10,160 bp · +
trnR-UCU · MW420977.1 · 10,335–10,406 bp · +
trnC-GCA · MW420977.1 · 28,560–28,630 bp · +
petN · MW420977.1 · 29,349–29,438 bp · +
trnT-GGU · MW420977.1 · 32,050–32,121 bp · +
psbD · MW420977.1 · 33,425–34,486 bp · +
psbC · MW420977.1 · 34,434–35,855 bp · +
psbZ · MW420977.1 · 36,511–36,699 bp · +
trnG-GCC · MW420977.1 · 36,971–37,041 bp · +
trnS-GGA · MW420977.1 · 45,804–45,890 bp · +
trnL-UAA · MW420977.1 · 47,862–48,430 bp · +
trnF-GAA · MW420977.1 · 48,735–48,807 bp · +
trnM-CAU · MW420977.1 · 52,963–53,035 bp · +
rbcL · MW420977.1 · 55,897–57,339 bp · +
accD · MW420977.1 · 58,061–59,527 bp · +
psaI · MW420977.1 · 60,228–60,338 bp · +
ycf4 · MW420977.1 · 60,754–61,308 bp · +
cemA · MW420977.1 · 61,994–62,653 bp · +
petA · MW420977.1 · 62,860–63,822 bp · +
petL · MW420977.1 · 66,535–66,630 bp · +
petG · MW420977.1 · 66,806–66,919 bp · +
psbJ · MW420977.1 · 67,627–67,761 bp · +
rpl33 · MW420977.1 · 68,233–68,433 bp · +
rps18 · MW420977.1 · 68,608–68,913 bp · +
rps12 · MW420977.1 · 138,510–139,300 bp · +
psbB · MW420977.1 · 73,000–74,526 bp · +
psbT · MW420977.1 · 74,717–74,818 bp · +
psbH · MW420977.1 · 75,127–75,348 bp · +
petB · MW420977.1 · 75,473–76,841 bp · +
petD · MW420977.1 · 77,030–78,231 bp · +
ycf2 · MW420977.1 · 86,651–93,460 bp · +
ycf15 · MW420977.1 · 93,602–93,799 bp · +
trnV-GAC · MW420977.1 · 100,059–100,130 bp · +
rrn16 · MW420977.1 · 100,358–101,848 bp · +
trnI-GAU · MW420977.1 · 102,147–103,166 bp · +
trnA-UGC · MW420977.1 · 103,232–104,113 bp · +
rrn23 · MW420977.1 · 104,283–107,095 bp · +
rrn4.5 · MW420977.1 · 107,194–107,296 bp · +
rrn5 · MW420977.1 · 107,544–107,664 bp · +
trnR-ACG · MW420977.1 · 107,899–107,972 bp · +
trnN-GUU · MW420977.1 · 108,520–108,591 bp · +
rpl32 · MW420977.1 · 112,432–112,608 bp · +
trnL-UAG · MW420977.1 · 113,035–113,114 bp · +
ccsA · MW420977.1 · 113,212–114,186 bp · +
trnN-GUU · MW420977.1 · 128,394–128,465 bp · +
rps7 · MW420977.1 · 139,354–139,821 bp · +
ndhB · MW420977.1 · 140,096–142,307 bp · +
trnL-CAA · MW420977.1 · 142,850–142,930 bp · +
trnI-CAU · MW420977.1 · 150,423–150,496 bp · +
rpl23 · MW420977.1 · 150,656–150,937 bp · +
rpl2 · MW420977.1 · 150,956–152,438 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria siphocampyloides
ANNOTATED PLASTOME
MW420977.1
152,533 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38133 76266 114400 152533 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 363 1421 1059 Locate
trnK-UUU gene − 1658 4246 2589 Locate
matK gene − 1949 3484 1536 Locate
rps16 gene − 5141 6310 1170 Locate
trnQ-UUC gene − 7436 7507 72 Locate
psbK gene + 7832 8017 186 Locate
psbI gene + 8408 8518 111 Locate
trnS-GCU gene − 8635 8722 88 Locate
trnG-CGA gene + 9401 10160 760 Locate
trnR-UCU gene + 10335 10406 72 Locate
atpA gene − 10503 12026 1524 Locate
atpF gene − 12100 13334 1235 Locate
atpH gene − 13700 13945 246 Locate
atpI gene − 14941 15684 744 Locate
rps2 gene − 16035 16745 711 Locate
rpoC2 gene − 16962 21167 4206 Locate
rpoC1 gene − 21322 24159 2838 Locate
rpoB gene − 24186 27398 3213 Locate
trnC-GCA gene + 28560 28630 71 Locate
petN gene + 29349 29438 90 Locate
psbM gene − 30435 30539 105 Locate
trnD-GUC gene − 31065 31138 74 Locate
trnY-GUA gene − 31252 31335 84 Locate
trnE-UUC gene − 31395 31467 73 Locate
trnT-GGU gene + 32050 32121 72 Locate
psbD gene + 33425 34486 1062 Locate
psbC gene + 34434 35855 1422 Locate
trnS-UCA gene − 36098 36190 93 Locate
psbZ gene + 36511 36699 189 Locate
trnG-GCC gene + 36971 37041 71 Locate
trnfM-CAU gene − 37195 37268 74 Locate
rps14 gene − 37418 37720 303 Locate
psaB gene − 37846 40050 2205 Locate
psaA gene − 40076 42328 2253 Locate
ycf3 gene − 43003 44916 1914 Locate
trnS-GGA gene + 45804 45890 87 Locate
rps4 gene − 46176 46781 606 Locate
trnT-UGU gene − 47120 47192 73 Locate
trnL-UAA gene + 47862 48430 569 Locate
trnF-GAA gene + 48735 48807 73 Locate
ndhJ gene − 49462 49938 477 Locate
ndhK gene − 50047 50724 678 Locate
ndhC gene − 50777 51139 363 Locate
trnV-UAC gene − 52130 52782 653 Locate
trnM-CAU gene + 52963 53035 73 Locate
atpE gene − 53245 53646 402 Locate
atpB gene − 53643 55130 1488 Locate
rbcL gene + 55897 57339 1443 Locate
accD gene + 58061 59527 1467 Locate
psaI gene + 60228 60338 111 Locate
ycf4 gene + 60754 61308 555 Locate
cemA gene + 61994 62653 660 Locate
petA gene + 62860 63822 963 Locate
pabJ gene − 64846 64968 123 Locate
psbL gene − 65102 65218 117 Locate
psbF gene − 65242 65361 120 Locate
psbE gene − 65376 65627 252 Locate
petL gene + 66535 66630 96 Locate
petG gene + 66806 66919 114 Locate
trnW-CCA gene − 67038 67111 74 Locate
trnP-UGG gene − 67281 67354 74 Locate
psbJ gene + 67627 67761 135 Locate
rpl33 gene + 68233 68433 201 Locate
rps18 gene + 68608 68913 306 Locate
rpl20 gene − 69150 69536 387 Locate
rps12 gene − 70321 70446 126 Locate
clpP gene − 70589 72520 1932 Locate
psbB gene + 73000 74526 1527 Locate
psbT gene + 74717 74818 102 Locate
psbN gene − 74892 75023 132 Locate
psbH gene + 75127 75348 222 Locate
petB gene + 75473 76841 1369 Locate
petD gene + 77030 78231 1202 Locate
rpoA gene − 78394 79407 1014 Locate
rps11 gene − 79479 79895 417 Locate
rpl36 gene − 79997 80110 114 Locate
infA gene − 80206 80439 234 Locate
rps8 gene − 80560 80970 411 Locate
rpl14 gene − 81141 81509 369 Locate
rpl16 gene − 81636 82880 1245 Locate
rps3 gene − 83035 83697 663 Locate
rpl22 gene − 83699 84154 456 Locate
rps19 gene − 84214 84492 279 Locate
rpl2 gene − 84547 86029 1483 Locate
rpl23 gene − 86048 86329 282 Locate
trnI-CAU gene − 86489 86562 74 Locate
ycf2 gene + 86651 93460 6810 Locate
ycf15 gene + 93602 93799 198 Locate
trnL-CAA gene − 94055 94135 81 Locate
ndhB gene − 94678 96889 2212 Locate
rps7 gene − 97164 97631 468 Locate
rps12 gene − 97685 98475 791 Locate
trnV-GAC gene + 100059 100130 72 Locate
rrn16 gene + 100358 101848 1491 Locate
trnI-GAU gene + 102147 103166 1020 Locate
trnA-UGC gene + 103232 104113 882 Locate
rrn23 gene + 104283 107095 2813 Locate
rrn4.5 gene + 107194 107296 103 Locate
rrn5 gene + 107544 107664 121 Locate
trnR-ACG gene + 107899 107972 74 Locate
trnN-GUU gene + 108520 108591 72 Locate
ndhF gene − 109668 111908 2241 Locate
rpl32 gene + 112432 112608 177 Locate
trnL-UAG gene + 113035 113114 80 Locate
ccsA gene + 113212 114186 975 Locate
ndhD gene − 114419 115939 1521 Locate
psaC gene − 116041 116286 246 Locate
ndhE gene − 116543 116848 306 Locate
ndhG gene − 117058 117588 531 Locate
ndhI gene − 117953 118453 501 Locate
ndhA gene − 118534 120626 2093 Locate
ndhH gene − 120628 121809 1182 Locate
rps15 gene − 121912 122184 273 Locate
ycf1 gene − 122452 128064 5613 Locate
trnN-GUU gene + 128394 128465 72 Locate
trnR-ACG gene − 129013 129086 74 Locate
rrn5 gene − 129321 129441 121 Locate
rrn4.5 gene − 129689 129791 103 Locate
rrn23 gene − 129890 132702 2813 Locate
trnA-UGC gene − 132872 133753 882 Locate
trnI-GAU gene − 133819 134838 1020 Locate
rrn16 gene − 135137 136627 1491 Locate
trnV-GAC gene − 136855 136926 72 Locate
rps12 gene + 138510 139300 791 Locate
rps7 gene + 139354 139821 468 Locate
ndhB gene + 140096 142307 2212 Locate
trnL-CAA gene + 142850 142930 81 Locate
ycf15 gene − 143186 143383 198 Locate
ycf2 gene − 143525 150334 6810 Locate
trnI-CAU gene + 150423 150496 74 Locate
rpl23 gene + 150656 150937 282 Locate
rpl2 gene + 150956 152438 1483 Locate
Status Available
Accession MW420977.1
Length 152,533 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources