Scutellaria sp chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058272.1 · 3–76 bp · −
psbA · PQ058272.1 · 378–1,436 bp · −
trnK-UUU · PQ058272.1 · 1,669–4,251 bp · −
matK · PQ058272.1 · 1,964–3,499 bp · −
rps16 · PQ058272.1 · 5,134–6,280 bp · −
trnQ-UUG · PQ058272.1 · 7,374–7,445 bp · −
trnS-GCU · PQ058272.1 · 8,571–8,658 bp · −
atpA · PQ058272.1 · 10,448–11,971 bp · −
atpF · PQ058272.1 · 12,055–13,285 bp · −
atpH · PQ058272.1 · 13,642–13,887 bp · −
atpI · PQ058272.1 · 14,887–15,630 bp · −
rps2 · PQ058272.1 · 15,979–16,815 bp · −
rpoC2 · PQ058272.1 · 16,906–21,099 bp · −
rpoC1 · PQ058272.1 · 21,254–24,085 bp · −
rpoB · PQ058272.1 · 24,112–27,324 bp · −
psbM · PQ058272.1 · 30,351–30,455 bp · −
trnD-GUC · PQ058272.1 · 30,987–31,060 bp · −
trnY-GUA · PQ058272.1 · 31,174–31,257 bp · −
trnE-UUC · PQ058272.1 · 31,317–31,389 bp · −
trnS-UGA · PQ058272.1 · 36,037–36,128 bp · −
trnfM-CAU · PQ058272.1 · 37,129–37,202 bp · −
rps14 · PQ058272.1 · 37,352–37,654 bp · −
psaB · PQ058272.1 · 37,782–39,986 bp · −
psaA · PQ058272.1 · 40,012–42,264 bp · −
ycf3 · PQ058272.1 · 42,975–44,899 bp · −
rps4 · PQ058272.1 · 46,153–46,758 bp · −
trnT-UGU · PQ058272.1 · 47,096–47,168 bp · −
ndhJ · PQ058272.1 · 49,407–49,883 bp · −
ndhK · PQ058272.1 · 49,991–50,668 bp · −
ndhC · PQ058272.1 · 50,722–51,084 bp · −
trnV-UAC · PQ058272.1 · 52,072–52,724 bp · −
atpE · PQ058272.1 · 53,172–53,573 bp · −
atpB · PQ058272.1 · 53,570–55,066 bp · −
psbJ · PQ058272.1 · 64,785–64,907 bp · −
psbL · PQ058272.1 · 65,041–65,262 bp · −
psbF · PQ058272.1 · 65,181–65,300 bp · −
psbE · PQ058272.1 · 65,315–65,566 bp · −
trnW-CCA · PQ058272.1 · 66,979–67,052 bp · −
trnP-UGG · PQ058272.1 · 67,216–67,289 bp · −
rpl20 · PQ058272.1 · 69,081–69,467 bp · −
rps12 · PQ058272.1 · 70,255–70,380 bp · −
rps12 · PQ058272.1 · 97,520–98,310 bp · −
clpP · PQ058272.1 · 70,522–72,465 bp · −
psbN · PQ058272.1 · 74,807–74,938 bp · −
rpoA · PQ058272.1 · 78,309–79,391 bp · −
rps11 · PQ058272.1 · 79,394–79,810 bp · −
rpl36 · PQ058272.1 · 79,912–80,025 bp · −
infA · PQ058272.1 · 80,121–80,354 bp · −
rps8 · PQ058272.1 · 80,474–80,884 bp · −
rpl14 · PQ058272.1 · 81,042–81,410 bp · −
rpl16 · PQ058272.1 · 81,540–82,723 bp · −
rps3 · PQ058272.1 · 82,878–83,540 bp · −
rpl22 · PQ058272.1 · 83,542–83,997 bp · −
rps19 · PQ058272.1 · 84,061–84,339 bp · −
rpl2 · PQ058272.1 · 84,393–85,875 bp · −
rpl23 · PQ058272.1 · 85,894–86,175 bp · −
trnI-CAU · PQ058272.1 · 86,335–86,408 bp · −
trnL-CAA · PQ058272.1 · 93,890–93,970 bp · −
ndhB · PQ058272.1 · 94,513–96,670 bp · −
rps7 · PQ058272.1 · 96,999–97,466 bp · −
trnN-GUU · PQ058272.1 · 108,320–108,391 bp · −
ndhF · PQ058272.1 · 109,468–111,708 bp · −
ndhD · PQ058272.1 · 114,238–115,740 bp · −
psaC · PQ058272.1 · 115,867–116,112 bp · −
ndhE · PQ058272.1 · 116,375–116,680 bp · −
ndhG · PQ058272.1 · 116,901–117,431 bp · −
ndhI · PQ058272.1 · 117,797–118,297 bp · −
ndhA · PQ058272.1 · 118,378–120,475 bp · −
ndhH · PQ058272.1 · 120,477–121,658 bp · −
rps15 · PQ058272.1 · 121,755–122,027 bp · −
ycf1 · PQ058272.1 · 122,301–127,874 bp · −
trnR-ACG · PQ058272.1 · 128,711–128,784 bp · −
rrn5 · PQ058272.1 · 129,009–129,129 bp · −
rrn4.5 · PQ058272.1 · 129,377–129,479 bp · −
rrn23 · PQ058272.1 · 129,578–132,390 bp · −
trnA-UGC · PQ058272.1 · 132,553–133,438 bp · −
trnI-GAU · PQ058272.1 · 133,503–134,523 bp · −
ycf68 · PQ058272.1 · 134,129–134,368 bp · −
rrn16 · PQ058272.1 · 134,822–136,312 bp · −
trnV-GAC · PQ058272.1 · 136,540–136,611 bp · −
ycf15 · PQ058272.1 · 142,848–143,045 bp · −
ycf2 · PQ058272.1 · 143,187–149,987 bp · −
psbK · PQ058272.1 · 7,770–7,955 bp · +
psbI · PQ058272.1 · 8,352–8,462 bp · +
trnG-UCC · PQ058272.1 · 9,349–10,105 bp · +
trnR-UCU · PQ058272.1 · 10,280–10,351 bp · +
trnC-GCA · PQ058272.1 · 28,488–28,558 bp · +
petN · PQ058272.1 · 29,254–29,343 bp · +
trnT-GGU · PQ058272.1 · 31,979–32,050 bp · +
psbD · PQ058272.1 · 33,355–34,416 bp · +
psbC · PQ058272.1 · 34,364–35,785 bp · +
psbZ · PQ058272.1 · 36,448–36,636 bp · +
trnG-GCC · PQ058272.1 · 36,908–36,978 bp · +
trnS-GGA · PQ058272.1 · 45,783–45,869 bp · +
trnL-UAA · PQ058272.1 · 47,802–48,362 bp · +
trnF-GAA · PQ058272.1 · 48,668–48,740 bp · +
trnM-CAU · PQ058272.1 · 52,905–52,977 bp · +
rbcL · PQ058272.1 · 55,813–57,276 bp · +
accD · PQ058272.1 · 57,954–59,483 bp · +
psaI · PQ058272.1 · 60,191–60,301 bp · +
ycf4 · PQ058272.1 · 60,728–61,282 bp · +
cemA · PQ058272.1 · 62,023–62,622 bp · +
petA · PQ058272.1 · 62,828–63,790 bp · +
petL · PQ058272.1 · 66,476–66,571 bp · +
petG · PQ058272.1 · 66,747–66,860 bp · +
psaJ · PQ058272.1 · 67,562–67,696 bp · +
rpl33 · PQ058272.1 · 68,168–68,368 bp · +
rps18 · PQ058272.1 · 68,542–68,847 bp · +
rps12 · PQ058272.1 · 138,174–138,964 bp · +
psbB · PQ058272.1 · 72,919–74,445 bp · +
psbT · PQ058272.1 · 74,637–74,738 bp · +
psbH · PQ058272.1 · 75,042–75,263 bp · +
petB · PQ058272.1 · 75,388–76,757 bp · +
petD · PQ058272.1 · 76,946–78,146 bp · +
ycf2 · PQ058272.1 · 86,497–93,297 bp · +
ycf15 · PQ058272.1 · 93,439–93,636 bp · +
trnV-GAC · PQ058272.1 · 99,873–99,944 bp · +
rrn16 · PQ058272.1 · 100,172–101,662 bp · +
trnI-GAU · PQ058272.1 · 101,961–102,981 bp · +
trnA-UGC · PQ058272.1 · 103,046–103,931 bp · +
rrn23 · PQ058272.1 · 104,094–106,906 bp · +
rrn4.5 · PQ058272.1 · 107,005–107,107 bp · +
rrn5 · PQ058272.1 · 107,355–107,475 bp · +
trnR-ACG · PQ058272.1 · 107,700–107,773 bp · +
rpl32 · PQ058272.1 · 112,232–112,408 bp · +
trnL-UAG · PQ058272.1 · 112,850–112,929 bp · +
ccsA · PQ058272.1 · 112,974–113,999 bp · +
trnN-GUU · PQ058272.1 · 128,093–128,164 bp · +
rps7 · PQ058272.1 · 139,018–139,485 bp · +
ndhB · PQ058272.1 · 139,814–141,971 bp · +
trnL-CAA · PQ058272.1 · 142,514–142,594 bp · +
trnI-CAU · PQ058272.1 · 150,076–150,149 bp · +
rpl23 · PQ058272.1 · 150,309–150,590 bp · +
rpl2 · PQ058272.1 · 150,609–152,091 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria sp
ANNOTATED PLASTOME
PQ058272.1
152,185 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38046 76092 114139 152185 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1669 4251 2583 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5134 6280 1147 Locate
trnQ-UUG gene − 7374 7445 72 Locate
psbK gene + 7770 7955 186 Locate
psbI gene + 8352 8462 111 Locate
trnS-GCU gene − 8571 8658 88 Locate
trnG-UCC gene + 9349 10105 757 Locate
trnR-UCU gene + 10280 10351 72 Locate
atpA gene − 10448 11971 1524 Locate
atpF gene − 12055 13285 1231 Locate
atpH gene − 13642 13887 246 Locate
atpI gene − 14887 15630 744 Locate
rps2 gene − 15979 16815 837 Locate
rpoC2 gene − 16906 21099 4194 Locate
rpoC1 gene − 21254 24085 2832 Locate
rpoB gene − 24112 27324 3213 Locate
trnC-GCA gene + 28488 28558 71 Locate
petN gene + 29254 29343 90 Locate
psbM gene − 30351 30455 105 Locate
trnD-GUC gene − 30987 31060 74 Locate
trnY-GUA gene − 31174 31257 84 Locate
trnE-UUC gene − 31317 31389 73 Locate
trnT-GGU gene + 31979 32050 72 Locate
psbD gene + 33355 34416 1062 Locate
psbC gene + 34364 35785 1422 Locate
trnS-UGA gene − 36037 36128 92 Locate
psbZ gene + 36448 36636 189 Locate
trnG-GCC gene + 36908 36978 71 Locate
trnfM-CAU gene − 37129 37202 74 Locate
rps14 gene − 37352 37654 303 Locate
psaB gene − 37782 39986 2205 Locate
psaA gene − 40012 42264 2253 Locate
ycf3 gene − 42975 44899 1925 Locate
trnS-GGA gene + 45783 45869 87 Locate
rps4 gene − 46153 46758 606 Locate
trnT-UGU gene − 47096 47168 73 Locate
trnL-UAA gene + 47802 48362 561 Locate
trnF-GAA gene + 48668 48740 73 Locate
ndhJ gene − 49407 49883 477 Locate
ndhK gene − 49991 50668 678 Locate
ndhC gene − 50722 51084 363 Locate
trnV-UAC gene − 52072 52724 653 Locate
trnM-CAU gene + 52905 52977 73 Locate
atpE gene − 53172 53573 402 Locate
atpB gene − 53570 55066 1497 Locate
rbcL gene + 55813 57276 1464 Locate
accD gene + 57954 59483 1530 Locate
psaI gene + 60191 60301 111 Locate
ycf4 gene + 60728 61282 555 Locate
cemA gene + 62023 62622 600 Locate
petA gene + 62828 63790 963 Locate
psbJ gene − 64785 64907 123 Locate
psbL gene − 65041 65262 222 Locate
psbF gene − 65181 65300 120 Locate
psbE gene − 65315 65566 252 Locate
petL gene + 66476 66571 96 Locate
petG gene + 66747 66860 114 Locate
trnW-CCA gene − 66979 67052 74 Locate
trnP-UGG gene − 67216 67289 74 Locate
psaJ gene + 67562 67696 135 Locate
rpl33 gene + 68168 68368 201 Locate
rps18 gene + 68542 68847 306 Locate
rpl20 gene − 69081 69467 387 Locate
rps12 gene − 70255 70380 126 Locate
clpP gene − 70522 72465 1944 Locate
psbB gene + 72919 74445 1527 Locate
psbT gene + 74637 74738 102 Locate
psbN gene − 74807 74938 132 Locate
psbH gene + 75042 75263 222 Locate
petB gene + 75388 76757 1370 Locate
petD gene + 76946 78146 1201 Locate
rpoA gene − 78309 79391 1083 Locate
rps11 gene − 79394 79810 417 Locate
rpl36 gene − 79912 80025 114 Locate
infA gene − 80121 80354 234 Locate
rps8 gene − 80474 80884 411 Locate
rpl14 gene − 81042 81410 369 Locate
rpl16 gene − 81540 82723 1184 Locate
rps3 gene − 82878 83540 663 Locate
rpl22 gene − 83542 83997 456 Locate
rps19 gene − 84061 84339 279 Locate
rpl2 gene − 84393 85875 1483 Locate
rpl23 gene − 85894 86175 282 Locate
trnI-CAU gene − 86335 86408 74 Locate
ycf2 gene + 86497 93297 6801 Locate
ycf15 gene + 93439 93636 198 Locate
trnL-CAA gene − 93890 93970 81 Locate
ndhB gene − 94513 96670 2158 Locate
rps7 gene − 96999 97466 468 Locate
rps12 gene − 97520 98310 791 Locate
trnV-GAC gene + 99873 99944 72 Locate
rrn16 gene + 100172 101662 1491 Locate
trnI-GAU gene + 101961 102981 1021 Locate
trnA-UGC gene + 103046 103931 886 Locate
rrn23 gene + 104094 106906 2813 Locate
rrn4.5 gene + 107005 107107 103 Locate
rrn5 gene + 107355 107475 121 Locate
trnR-ACG gene + 107700 107773 74 Locate
trnN-GUU gene − 108320 108391 72 Locate
ndhF gene − 109468 111708 2241 Locate
rpl32 gene + 112232 112408 177 Locate
trnL-UAG gene + 112850 112929 80 Locate
ccsA gene + 112974 113999 1026 Locate
ndhD gene − 114238 115740 1503 Locate
psaC gene − 115867 116112 246 Locate
ndhE gene − 116375 116680 306 Locate
ndhG gene − 116901 117431 531 Locate
ndhI gene − 117797 118297 501 Locate
ndhA gene − 118378 120475 2098 Locate
ndhH gene − 120477 121658 1182 Locate
rps15 gene − 121755 122027 273 Locate
ycf1 gene − 122301 127874 5574 Locate
trnN-GUU gene + 128093 128164 72 Locate
trnR-ACG gene − 128711 128784 74 Locate
rrn5 gene − 129009 129129 121 Locate
rrn4.5 gene − 129377 129479 103 Locate
rrn23 gene − 129578 132390 2813 Locate
trnA-UGC gene − 132553 133438 886 Locate
trnI-GAU gene − 133503 134523 1021 Locate
ycf68 gene − 134129 134368 240 Locate
rrn16 gene − 134822 136312 1491 Locate
trnV-GAC gene − 136540 136611 72 Locate
rps12 gene + 138174 138964 791 Locate
rps7 gene + 139018 139485 468 Locate
ndhB gene + 139814 141971 2158 Locate
trnL-CAA gene + 142514 142594 81 Locate
ycf15 gene − 142848 143045 198 Locate
ycf2 gene − 143187 149987 6801 Locate
trnI-CAU gene + 150076 150149 74 Locate
rpl23 gene + 150309 150590 282 Locate
rpl2 gene + 150609 152091 1483 Locate
Status Available
Accession PQ058272.1
Length 152,185 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 0
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources