Scutellaria stocksii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059230.1 · 4–77 bp · −
psbA · PQ059230.1 · 374–1,432 bp · −
trnK-UUU · PQ059230.1 · 1,683–4,265 bp · −
matK · PQ059230.1 · 1,973–3,499 bp · −
rps16 · PQ059230.1 · 5,165–6,323 bp · −
trnQ-UUG · PQ059230.1 · 7,448–7,519 bp · −
trnS-GCU · PQ059230.1 · 8,647–8,734 bp · −
atpA · PQ059230.1 · 10,531–12,054 bp · −
atpF · PQ059230.1 · 12,136–13,365 bp · −
atpH · PQ059230.1 · 13,726–13,971 bp · −
atpI · PQ059230.1 · 14,959–15,702 bp · −
rps2 · PQ059230.1 · 16,049–16,759 bp · −
rpoC2 · PQ059230.1 · 16,976–21,181 bp · −
rpoC1 · PQ059230.1 · 21,336–24,177 bp · −
rpoB · PQ059230.1 · 24,204–27,416 bp · −
psbM · PQ059230.1 · 30,502–30,606 bp · −
trnD-GUC · PQ059230.1 · 31,132–31,205 bp · −
trnY-GUA · PQ059230.1 · 31,319–31,402 bp · −
trnE-UUC · PQ059230.1 · 31,462–31,534 bp · −
trnS-UGA · PQ059230.1 · 36,136–36,227 bp · −
trnfM-CAU · PQ059230.1 · 37,227–37,300 bp · −
rps14 · PQ059230.1 · 37,455–37,757 bp · −
psaB · PQ059230.1 · 37,886–40,090 bp · −
psaA · PQ059230.1 · 40,116–42,368 bp · −
ycf3 · PQ059230.1 · 43,066–44,986 bp · −
rps4 · PQ059230.1 · 46,224–46,829 bp · −
trnT-UGU · PQ059230.1 · 47,171–47,243 bp · −
ndhJ · PQ059230.1 · 49,519–49,995 bp · −
ndhK · PQ059230.1 · 50,104–50,781 bp · −
ndhC · PQ059230.1 · 50,835–51,197 bp · −
trnV-UAC · PQ059230.1 · 52,175–52,827 bp · −
atpE · PQ059230.1 · 53,282–53,683 bp · −
atpB · PQ059230.1 · 53,680–55,176 bp · −
psbJ · PQ059230.1 · 64,928–65,050 bp · −
psbL · PQ059230.1 · 65,184–65,300 bp · −
psbF · PQ059230.1 · 65,324–65,443 bp · −
psbE · PQ059230.1 · 65,458–65,709 bp · −
trnW-CCA · PQ059230.1 · 67,088–67,161 bp · −
trnP-UGG · PQ059230.1 · 67,331–67,404 bp · −
rpl20 · PQ059230.1 · 69,204–69,590 bp · −
rps12 · PQ059230.1 · 70,385–70,498 bp · −
rps12 · PQ059230.1 · 97,661–98,451 bp · −
clpP · PQ059230.1 · 70,641–72,570 bp · −
psbN · PQ059230.1 · 74,914–75,045 bp · −
rpoA · PQ059230.1 · 78,609–79,409 bp · −
rps11 · PQ059230.1 · 79,481–79,897 bp · −
rpl36 · PQ059230.1 · 79,999–80,112 bp · −
infA · PQ059230.1 · 80,207–80,440 bp · −
rps8 · PQ059230.1 · 80,562–80,972 bp · −
rpl14 · PQ059230.1 · 81,124–81,492 bp · −
rpl16 · PQ059230.1 · 81,619–82,852 bp · −
rps3 · PQ059230.1 · 83,008–83,670 bp · −
rpl22 · PQ059230.1 · 83,672–84,127 bp · −
rps19 · PQ059230.1 · 84,187–84,465 bp · −
rpl2 · PQ059230.1 · 84,520–86,001 bp · −
rpl23 · PQ059230.1 · 86,020–86,301 bp · −
trnI-CAU · PQ059230.1 · 86,461–86,534 bp · −
trnL-CAA · PQ059230.1 · 94,031–94,111 bp · −
ndhB · PQ059230.1 · 94,654–96,811 bp · −
rps7 · PQ059230.1 · 97,140–97,607 bp · −
trnN-GUU · PQ059230.1 · 108,481–108,552 bp · −
ndhF · PQ059230.1 · 109,609–111,870 bp · −
ndhD · PQ059230.1 · 114,217–115,746 bp · −
psaC · PQ059230.1 · 115,846–116,091 bp · −
ndhE · PQ059230.1 · 116,347–116,652 bp · −
ndhG · PQ059230.1 · 116,869–117,399 bp · −
ndhI · PQ059230.1 · 117,766–118,266 bp · −
ndhA · PQ059230.1 · 118,347–120,468 bp · −
ndhH · PQ059230.1 · 120,470–121,681 bp · −
rps15 · PQ059230.1 · 121,752–122,024 bp · −
ycf1 · PQ059230.1 · 122,222–127,858 bp · −
trnR-ACG · PQ059230.1 · 128,697–128,770 bp · −
rrn5 · PQ059230.1 · 129,005–129,125 bp · −
rrn4.5 · PQ059230.1 · 129,373–129,475 bp · −
rrn23 · PQ059230.1 · 129,574–132,385 bp · −
trnA-UGC · PQ059230.1 · 132,548–133,433 bp · −
trnI-GAU · PQ059230.1 · 133,498–134,518 bp · −
ycf68 · PQ059230.1 · 134,070–134,363 bp · −
rrn16 · PQ059230.1 · 134,817–136,307 bp · −
trnV-GAC · PQ059230.1 · 136,534–136,605 bp · −
ycf15 · PQ059230.1 · 142,858–143,106 bp · −
ycf2 · PQ059230.1 · 143,197–150,006 bp · −
psbK · PQ059230.1 · 7,844–8,029 bp · +
psbI · PQ059230.1 · 8,419–8,529 bp · +
trnG-UCC · PQ059230.1 · 9,432–10,188 bp · +
trnR-UCU · PQ059230.1 · 10,363–10,434 bp · +
trnC-GCA · PQ059230.1 · 28,577–28,647 bp · +
petN · PQ059230.1 · 29,359–29,448 bp · +
trnT-GGU · PQ059230.1 · 32,110–32,181 bp · +
psbD · PQ059230.1 · 33,470–34,531 bp · +
psbC · PQ059230.1 · 34,479–35,900 bp · +
psbZ · PQ059230.1 · 36,543–36,731 bp · +
trnG-GCC · PQ059230.1 · 37,010–37,080 bp · +
trnS-GGA · PQ059230.1 · 45,862–45,948 bp · +
trnL-UAA · PQ059230.1 · 47,929–48,488 bp · +
trnF-GAA · PQ059230.1 · 48,793–48,865 bp · +
trnM-CAU · PQ059230.1 · 53,016–53,088 bp · +
rbcL · PQ059230.1 · 55,928–57,391 bp · +
accD · PQ059230.1 · 58,118–59,596 bp · +
psaI · PQ059230.1 · 60,303–60,413 bp · +
ycf4 · PQ059230.1 · 60,847–61,401 bp · +
cemA · PQ059230.1 · 62,149–62,748 bp · +
petA · PQ059230.1 · 62,955–63,917 bp · +
petL · PQ059230.1 · 66,585–66,680 bp · +
petG · PQ059230.1 · 66,856–66,969 bp · +
psaJ · PQ059230.1 · 67,677–67,811 bp · +
rpl33 · PQ059230.1 · 68,289–68,489 bp · +
rps18 · PQ059230.1 · 68,664–68,969 bp · +
rps12 · PQ059230.1 · 138,178–138,968 bp · +
psbB · PQ059230.1 · 73,029–74,555 bp · +
psbT · PQ059230.1 · 74,746–74,853 bp · +
psbH · PQ059230.1 · 75,149–75,370 bp · +
petB · PQ059230.1 · 75,495–76,867 bp · +
petD · PQ059230.1 · 77,050–78,254 bp · +
ycf2 · PQ059230.1 · 86,623–93,432 bp · +
ycf15 · PQ059230.1 · 93,523–93,771 bp · +
trnV-GAC · PQ059230.1 · 100,024–100,095 bp · +
rrn16 · PQ059230.1 · 100,322–101,812 bp · +
trnI-GAU · PQ059230.1 · 102,111–103,131 bp · +
trnA-UGC · PQ059230.1 · 103,196–104,081 bp · +
rrn23 · PQ059230.1 · 104,244–107,055 bp · +
rrn4.5 · PQ059230.1 · 107,154–107,256 bp · +
rrn5 · PQ059230.1 · 107,504–107,624 bp · +
trnR-ACG · PQ059230.1 · 107,859–107,932 bp · +
rpl32 · PQ059230.1 · 112,198–112,374 bp · +
trnL-UAG · PQ059230.1 · 112,820–112,899 bp · +
ccsA · PQ059230.1 · 112,985–113,959 bp · +
trnN-GUU · PQ059230.1 · 128,077–128,148 bp · +
rps7 · PQ059230.1 · 139,022–139,489 bp · +
ndhB · PQ059230.1 · 139,818–141,975 bp · +
trnL-CAA · PQ059230.1 · 142,518–142,598 bp · +
trnI-CAU · PQ059230.1 · 150,095–150,168 bp · +
rpl23 · PQ059230.1 · 150,328–150,609 bp · +
rpl2 · PQ059230.1 · 150,628–152,109 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria stocksii
ANNOTATED PLASTOME
PQ059230.1
152,209 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38052 76104 114157 152209 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1683 4265 2583 Locate
matK gene − 1973 3499 1527 Locate
rps16 gene − 5165 6323 1159 Locate
trnQ-UUG gene − 7448 7519 72 Locate
psbK gene + 7844 8029 186 Locate
psbI gene + 8419 8529 111 Locate
trnS-GCU gene − 8647 8734 88 Locate
trnG-UCC gene + 9432 10188 757 Locate
trnR-UCU gene + 10363 10434 72 Locate
atpA gene − 10531 12054 1524 Locate
atpF gene − 12136 13365 1230 Locate
atpH gene − 13726 13971 246 Locate
atpI gene − 14959 15702 744 Locate
rps2 gene − 16049 16759 711 Locate
rpoC2 gene − 16976 21181 4206 Locate
rpoC1 gene − 21336 24177 2842 Locate
rpoB gene − 24204 27416 3213 Locate
trnC-GCA gene + 28577 28647 71 Locate
petN gene + 29359 29448 90 Locate
psbM gene − 30502 30606 105 Locate
trnD-GUC gene − 31132 31205 74 Locate
trnY-GUA gene − 31319 31402 84 Locate
trnE-UUC gene − 31462 31534 73 Locate
trnT-GGU gene + 32110 32181 72 Locate
psbD gene + 33470 34531 1062 Locate
psbC gene + 34479 35900 1422 Locate
trnS-UGA gene − 36136 36227 92 Locate
psbZ gene + 36543 36731 189 Locate
trnG-GCC gene + 37010 37080 71 Locate
trnfM-CAU gene − 37227 37300 74 Locate
rps14 gene − 37455 37757 303 Locate
psaB gene − 37886 40090 2205 Locate
psaA gene − 40116 42368 2253 Locate
ycf3 gene − 43066 44986 1921 Locate
trnS-GGA gene + 45862 45948 87 Locate
rps4 gene − 46224 46829 606 Locate
trnT-UGU gene − 47171 47243 73 Locate
trnL-UAA gene + 47929 48488 560 Locate
trnF-GAA gene + 48793 48865 73 Locate
ndhJ gene − 49519 49995 477 Locate
ndhK gene − 50104 50781 678 Locate
ndhC gene − 50835 51197 363 Locate
trnV-UAC gene − 52175 52827 653 Locate
trnM-CAU gene + 53016 53088 73 Locate
atpE gene − 53282 53683 402 Locate
atpB gene − 53680 55176 1497 Locate
rbcL gene + 55928 57391 1464 Locate
accD gene + 58118 59596 1479 Locate
psaI gene + 60303 60413 111 Locate
ycf4 gene + 60847 61401 555 Locate
cemA gene + 62149 62748 600 Locate
petA gene + 62955 63917 963 Locate
psbJ gene − 64928 65050 123 Locate
psbL gene − 65184 65300 117 Locate
psbF gene − 65324 65443 120 Locate
psbE gene − 65458 65709 252 Locate
petL gene + 66585 66680 96 Locate
petG gene + 66856 66969 114 Locate
trnW-CCA gene − 67088 67161 74 Locate
trnP-UGG gene − 67331 67404 74 Locate
psaJ gene + 67677 67811 135 Locate
rpl33 gene + 68289 68489 201 Locate
rps18 gene + 68664 68969 306 Locate
rpl20 gene − 69204 69590 387 Locate
rps12 gene − 70385 70498 114 Locate
clpP gene − 70641 72570 1930 Locate
psbB gene + 73029 74555 1527 Locate
psbT gene + 74746 74853 108 Locate
psbN gene − 74914 75045 132 Locate
psbH gene + 75149 75370 222 Locate
petB gene + 75495 76867 1373 Locate
petD gene + 77050 78254 1205 Locate
rpoA gene − 78609 79409 801 Locate
rps11 gene − 79481 79897 417 Locate
rpl36 gene − 79999 80112 114 Locate
infA gene − 80207 80440 234 Locate
rps8 gene − 80562 80972 411 Locate
rpl14 gene − 81124 81492 369 Locate
rpl16 gene − 81619 82852 1234 Locate
rps3 gene − 83008 83670 663 Locate
rpl22 gene − 83672 84127 456 Locate
rps19 gene − 84187 84465 279 Locate
rpl2 gene − 84520 86001 1482 Locate
rpl23 gene − 86020 86301 282 Locate
trnI-CAU gene − 86461 86534 74 Locate
ycf2 gene + 86623 93432 6810 Locate
ycf15 gene + 93523 93771 249 Locate
trnL-CAA gene − 94031 94111 81 Locate
ndhB gene − 94654 96811 2158 Locate
rps7 gene − 97140 97607 468 Locate
rps12 gene − 97661 98451 791 Locate
trnV-GAC gene + 100024 100095 72 Locate
rrn16 gene + 100322 101812 1491 Locate
trnI-GAU gene + 102111 103131 1021 Locate
trnA-UGC gene + 103196 104081 886 Locate
rrn23 gene + 104244 107055 2812 Locate
rrn4.5 gene + 107154 107256 103 Locate
rrn5 gene + 107504 107624 121 Locate
trnR-ACG gene + 107859 107932 74 Locate
trnN-GUU gene − 108481 108552 72 Locate
ndhF gene − 109609 111870 2262 Locate
rpl32 gene + 112198 112374 177 Locate
trnL-UAG gene + 112820 112899 80 Locate
ccsA gene + 112985 113959 975 Locate
ndhD gene − 114217 115746 1530 Locate
psaC gene − 115846 116091 246 Locate
ndhE gene − 116347 116652 306 Locate
ndhG gene − 116869 117399 531 Locate
ndhI gene − 117766 118266 501 Locate
ndhA gene − 118347 120468 2122 Locate
ndhH gene − 120470 121681 1212 Locate
rps15 gene − 121752 122024 273 Locate
ycf1 gene − 122222 127858 5637 Locate
trnN-GUU gene + 128077 128148 72 Locate
trnR-ACG gene − 128697 128770 74 Locate
rrn5 gene − 129005 129125 121 Locate
rrn4.5 gene − 129373 129475 103 Locate
rrn23 gene − 129574 132385 2812 Locate
trnA-UGC gene − 132548 133433 886 Locate
trnI-GAU gene − 133498 134518 1021 Locate
ycf68 gene − 134070 134363 294 Locate
rrn16 gene − 134817 136307 1491 Locate
trnV-GAC gene − 136534 136605 72 Locate
rps12 gene + 138178 138968 791 Locate
rps7 gene + 139022 139489 468 Locate
ndhB gene + 139818 141975 2158 Locate
trnL-CAA gene + 142518 142598 81 Locate
ycf15 gene − 142858 143106 249 Locate
ycf2 gene − 143197 150006 6810 Locate
trnI-CAU gene + 150095 150168 74 Locate
rpl23 gene + 150328 150609 282 Locate
rpl2 gene + 150628 152109 1482 Locate
Status Available
Accession PQ059230.1
Length 152,209 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources