Scutellaria striatella chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130065.1 · 10–83 bp · −
psbA · PZ130065.1 · 381–1,439 bp · −
trnK-UUU · PZ130065.1 · 1,681–4,263 bp · −
matK · PZ130065.1 · 1,971–3,497 bp · −
rps16 · PZ130065.1 · 5,164–6,322 bp · −
trnQ-UUG · PZ130065.1 · 7,433–7,504 bp · −
trnS-GCU · PZ130065.1 · 8,623–8,710 bp · −
atpA · PZ130065.1 · 10,500–12,023 bp · −
atpF · PZ130065.1 · 12,105–13,333 bp · −
atpH · PZ130065.1 · 13,697–13,942 bp · −
atpI · PZ130065.1 · 14,930–15,673 bp · −
rps2 · PZ130065.1 · 16,019–16,729 bp · −
rpoC2 · PZ130065.1 · 16,944–21,149 bp · −
rpoC1 · PZ130065.1 · 21,304–24,138 bp · −
rpoB · PZ130065.1 · 24,165–27,377 bp · −
psbM · PZ130065.1 · 30,415–30,519 bp · −
trnD-GUC · PZ130065.1 · 31,045–31,118 bp · −
trnY-GUA · PZ130065.1 · 31,232–31,315 bp · −
trnE-UUC · PZ130065.1 · 31,375–31,447 bp · −
trnS-UGA · PZ130065.1 · 36,068–36,159 bp · −
trnfM-CAU · PZ130065.1 · 37,158–37,231 bp · −
rps14 · PZ130065.1 · 37,385–37,687 bp · −
psaB · PZ130065.1 · 37,816–40,020 bp · −
psaA · PZ130065.1 · 40,046–42,298 bp · −
ycf3 · PZ130065.1 · 42,996–44,918 bp · −
rps4 · PZ130065.1 · 46,169–46,774 bp · −
trnT-UGU · PZ130065.1 · 47,115–47,187 bp · −
ndhJ · PZ130065.1 · 49,460–49,936 bp · −
ndhK · PZ130065.1 · 50,045–50,806 bp · −
ndhC · PZ130065.1 · 50,776–51,138 bp · −
trnV-UAC · PZ130065.1 · 52,124–52,776 bp · −
atpE · PZ130065.1 · 53,231–53,632 bp · −
atpB · PZ130065.1 · 53,629–55,125 bp · −
psbJ · PZ130065.1 · 64,869–64,991 bp · −
psbL · PZ130065.1 · 65,125–65,241 bp · −
psbF · PZ130065.1 · 65,265–65,384 bp · −
psbE · PZ130065.1 · 65,399–65,650 bp · −
trnW-CCA · PZ130065.1 · 67,026–67,099 bp · −
trnP-UGG · PZ130065.1 · 67,269–67,342 bp · −
rpl20 · PZ130065.1 · 69,138–69,524 bp · −
rps12 · PZ130065.1 · 70,307–70,432 bp · −
rps12 · PZ130065.1 · 97,600–98,390 bp · −
clpP · PZ130065.1 · 70,574–72,503 bp · −
psbN · PZ130065.1 · 74,848–74,979 bp · −
rpoA · PZ130065.1 · 78,546–79,346 bp · −
rps11 · PZ130065.1 · 79,418–79,834 bp · −
rpl36 · PZ130065.1 · 79,936–80,049 bp · −
infA · PZ130065.1 · 80,144–80,377 bp · −
rps8 · PZ130065.1 · 80,500–80,910 bp · −
rpl14 · PZ130065.1 · 81,063–81,431 bp · −
rpl16 · PZ130065.1 · 81,558–82,791 bp · −
rps3 · PZ130065.1 · 82,947–83,609 bp · −
rpl22 · PZ130065.1 · 83,611–84,066 bp · −
rps19 · PZ130065.1 · 84,126–84,404 bp · −
rpl2 · PZ130065.1 · 84,459–85,940 bp · −
rpl23 · PZ130065.1 · 85,959–86,240 bp · −
trnI-CAU · PZ130065.1 · 86,400–86,473 bp · −
trnL-CAA · PZ130065.1 · 93,970–94,050 bp · −
ndhB · PZ130065.1 · 94,593–96,804 bp · −
rps7 · PZ130065.1 · 97,079–97,546 bp · −
trnN-GUU · PZ130065.1 · 108,430–108,501 bp · −
ndhF · PZ130065.1 · 109,558–111,819 bp · −
ndhD · PZ130065.1 · 114,185–115,714 bp · −
psaC · PZ130065.1 · 115,815–116,060 bp · −
ndhE · PZ130065.1 · 116,316–116,621 bp · −
ndhG · PZ130065.1 · 116,838–117,368 bp · −
ndhI · PZ130065.1 · 117,728–118,228 bp · −
ndhA · PZ130065.1 · 118,309–120,430 bp · −
ndhH · PZ130065.1 · 120,432–121,613 bp · −
rps15 · PZ130065.1 · 121,710–121,982 bp · −
ycf1 · PZ130065.1 · 122,171–127,807 bp · −
trnR-ACG · PZ130065.1 · 128,646–128,719 bp · −
rrn5 · PZ130065.1 · 128,954–129,074 bp · −
rrn4.5 · PZ130065.1 · 129,322–129,424 bp · −
rrn23 · PZ130065.1 · 129,523–132,334 bp · −
trnA-UGC · PZ130065.1 · 132,504–133,393 bp · −
trnI-GAU · PZ130065.1 · 133,458–134,478 bp · −
ycf68 · PZ130065.1 · 134,030–134,323 bp · −
rrn16 · PZ130065.1 · 134,777–136,267 bp · −
trnV-GAC · PZ130065.1 · 136,494–136,565 bp · −
ycf15 · PZ130065.1 · 142,817–143,014 bp · −
ycf2 · PZ130065.1 · 143,156–149,965 bp · −
psbK · PZ130065.1 · 7,829–8,014 bp · +
psbI · PZ130065.1 · 8,403–8,513 bp · +
trnG-UCC · PZ130065.1 · 9,401–10,157 bp · +
trnR-UCU · PZ130065.1 · 10,332–10,403 bp · +
trnC-GCA · PZ130065.1 · 28,537–28,607 bp · +
petN · PZ130065.1 · 29,326–29,415 bp · +
trnT-GGU · PZ130065.1 · 32,023–32,094 bp · +
psbD · PZ130065.1 · 33,402–34,463 bp · +
psbC · PZ130065.1 · 34,411–35,832 bp · +
psbZ · PZ130065.1 · 36,475–36,663 bp · +
trnG-GCC · PZ130065.1 · 36,941–37,011 bp · +
trnS-GGA · PZ130065.1 · 45,807–45,893 bp · +
trnL-UAA · PZ130065.1 · 47,872–48,431 bp · +
trnF-GAA · PZ130065.1 · 48,740–48,812 bp · +
trnM-CAU · PZ130065.1 · 52,965–53,037 bp · +
rbcL · PZ130065.1 · 55,877–57,340 bp · +
accD · PZ130065.1 · 58,060–59,538 bp · +
psaI · PZ130065.1 · 60,246–60,356 bp · +
ycf4 · PZ130065.1 · 60,790–61,344 bp · +
cemA · PZ130065.1 · 62,093–62,692 bp · +
petA · PZ130065.1 · 62,899–63,861 bp · +
petL · PZ130065.1 · 66,524–66,619 bp · +
petG · PZ130065.1 · 66,794–66,907 bp · +
psaJ · PZ130065.1 · 67,551–67,748 bp · +
rpl33 · PZ130065.1 · 68,224–68,424 bp · +
rps18 · PZ130065.1 · 68,598–68,903 bp · +
rps12 · PZ130065.1 · 138,137–138,927 bp · +
psbB · PZ130065.1 · 72,964–74,490 bp · +
psbT · PZ130065.1 · 74,680–74,787 bp · +
psbH · PZ130065.1 · 75,083–75,304 bp · +
petB · PZ130065.1 · 75,429–76,797 bp · +
petD · PZ130065.1 · 76,980–78,191 bp · +
ycf2 · PZ130065.1 · 86,562–93,371 bp · +
ycf15 · PZ130065.1 · 93,513–93,710 bp · +
trnV-GAC · PZ130065.1 · 99,962–100,033 bp · +
rrn16 · PZ130065.1 · 100,260–101,750 bp · +
trnI-GAU · PZ130065.1 · 102,049–103,069 bp · +
trnA-UGC · PZ130065.1 · 103,134–104,023 bp · +
rrn23 · PZ130065.1 · 104,193–107,004 bp · +
rrn4.5 · PZ130065.1 · 107,103–107,205 bp · +
rrn5 · PZ130065.1 · 107,453–107,573 bp · +
trnR-ACG · PZ130065.1 · 107,808–107,881 bp · +
rpl32 · PZ130065.1 · 112,147–112,323 bp · +
trnL-UAG · PZ130065.1 · 112,771–112,850 bp · +
ccsA · PZ130065.1 · 112,952–113,929 bp · +
trnN-GUU · PZ130065.1 · 128,026–128,097 bp · +
rps7 · PZ130065.1 · 138,981–139,448 bp · +
ndhB · PZ130065.1 · 139,723–141,934 bp · +
trnL-CAA · PZ130065.1 · 142,477–142,557 bp · +
trnI-CAU · PZ130065.1 · 150,054–150,127 bp · +
rpl23 · PZ130065.1 · 150,287–150,568 bp · +
rpl2 · PZ130065.1 · 150,587–152,068 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria striatella
ANNOTATED PLASTOME
PZ130065.1
152,168 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38042 76084 114126 152168 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1681 4263 2583 Locate
matK gene − 1971 3497 1527 Locate
rps16 gene − 5164 6322 1159 Locate
trnQ-UUG gene − 7433 7504 72 Locate
psbK gene + 7829 8014 186 Locate
psbI gene + 8403 8513 111 Locate
trnS-GCU gene − 8623 8710 88 Locate
trnG-UCC gene + 9401 10157 757 Locate
trnR-UCU gene + 10332 10403 72 Locate
atpA gene − 10500 12023 1524 Locate
atpF gene − 12105 13333 1229 Locate
atpH gene − 13697 13942 246 Locate
atpI gene − 14930 15673 744 Locate
rps2 gene − 16019 16729 711 Locate
rpoC2 gene − 16944 21149 4206 Locate
rpoC1 gene − 21304 24138 2835 Locate
rpoB gene − 24165 27377 3213 Locate
trnC-GCA gene + 28537 28607 71 Locate
petN gene + 29326 29415 90 Locate
psbM gene − 30415 30519 105 Locate
trnD-GUC gene − 31045 31118 74 Locate
trnY-GUA gene − 31232 31315 84 Locate
trnE-UUC gene − 31375 31447 73 Locate
trnT-GGU gene + 32023 32094 72 Locate
psbD gene + 33402 34463 1062 Locate
psbC gene + 34411 35832 1422 Locate
trnS-UGA gene − 36068 36159 92 Locate
psbZ gene + 36475 36663 189 Locate
trnG-GCC gene + 36941 37011 71 Locate
trnfM-CAU gene − 37158 37231 74 Locate
rps14 gene − 37385 37687 303 Locate
psaB gene − 37816 40020 2205 Locate
psaA gene − 40046 42298 2253 Locate
ycf3 gene − 42996 44918 1923 Locate
trnS-GGA gene + 45807 45893 87 Locate
rps4 gene − 46169 46774 606 Locate
trnT-UGU gene − 47115 47187 73 Locate
trnL-UAA gene + 47872 48431 560 Locate
trnF-GAA gene + 48740 48812 73 Locate
ndhJ gene − 49460 49936 477 Locate
ndhK gene − 50045 50806 762 Locate
ndhC gene − 50776 51138 363 Locate
trnV-UAC gene − 52124 52776 653 Locate
trnM-CAU gene + 52965 53037 73 Locate
atpE gene − 53231 53632 402 Locate
atpB gene − 53629 55125 1497 Locate
rbcL gene + 55877 57340 1464 Locate
accD gene + 58060 59538 1479 Locate
psaI gene + 60246 60356 111 Locate
ycf4 gene + 60790 61344 555 Locate
cemA gene + 62093 62692 600 Locate
petA gene + 62899 63861 963 Locate
psbJ gene − 64869 64991 123 Locate
psbL gene − 65125 65241 117 Locate
psbF gene − 65265 65384 120 Locate
psbE gene − 65399 65650 252 Locate
petL gene + 66524 66619 96 Locate
petG gene + 66794 66907 114 Locate
trnW-CCA gene − 67026 67099 74 Locate
trnP-UGG gene − 67269 67342 74 Locate
psaJ gene + 67551 67748 198 Locate
rpl33 gene + 68224 68424 201 Locate
rps18 gene + 68598 68903 306 Locate
rpl20 gene − 69138 69524 387 Locate
rps12 gene − 70307 70432 126 Locate
clpP gene − 70574 72503 1930 Locate
psbB gene + 72964 74490 1527 Locate
psbT gene + 74680 74787 108 Locate
psbN gene − 74848 74979 132 Locate
psbH gene + 75083 75304 222 Locate
petB gene + 75429 76797 1369 Locate
petD gene + 76980 78191 1212 Locate
rpoA gene − 78546 79346 801 Locate
rps11 gene − 79418 79834 417 Locate
rpl36 gene − 79936 80049 114 Locate
infA gene − 80144 80377 234 Locate
rps8 gene − 80500 80910 411 Locate
rpl14 gene − 81063 81431 369 Locate
rpl16 gene − 81558 82791 1234 Locate
rps3 gene − 82947 83609 663 Locate
rpl22 gene − 83611 84066 456 Locate
rps19 gene − 84126 84404 279 Locate
rpl2 gene − 84459 85940 1482 Locate
rpl23 gene − 85959 86240 282 Locate
trnI-CAU gene − 86400 86473 74 Locate
ycf2 gene + 86562 93371 6810 Locate
ycf15 gene + 93513 93710 198 Locate
trnL-CAA gene − 93970 94050 81 Locate
ndhB gene − 94593 96804 2212 Locate
rps7 gene − 97079 97546 468 Locate
rps12 gene − 97600 98390 791 Locate
trnV-GAC gene + 99962 100033 72 Locate
rrn16 gene + 100260 101750 1491 Locate
trnI-GAU gene + 102049 103069 1021 Locate
trnA-UGC gene + 103134 104023 890 Locate
rrn23 gene + 104193 107004 2812 Locate
rrn4.5 gene + 107103 107205 103 Locate
rrn5 gene + 107453 107573 121 Locate
trnR-ACG gene + 107808 107881 74 Locate
trnN-GUU gene − 108430 108501 72 Locate
ndhF gene − 109558 111819 2262 Locate
rpl32 gene + 112147 112323 177 Locate
trnL-UAG gene + 112771 112850 80 Locate
ccsA gene + 112952 113929 978 Locate
ndhD gene − 114185 115714 1530 Locate
psaC gene − 115815 116060 246 Locate
ndhE gene − 116316 116621 306 Locate
ndhG gene − 116838 117368 531 Locate
ndhI gene − 117728 118228 501 Locate
ndhA gene − 118309 120430 2122 Locate
ndhH gene − 120432 121613 1182 Locate
rps15 gene − 121710 121982 273 Locate
ycf1 gene − 122171 127807 5637 Locate
trnN-GUU gene + 128026 128097 72 Locate
trnR-ACG gene − 128646 128719 74 Locate
rrn5 gene − 128954 129074 121 Locate
rrn4.5 gene − 129322 129424 103 Locate
rrn23 gene − 129523 132334 2812 Locate
trnA-UGC gene − 132504 133393 890 Locate
trnI-GAU gene − 133458 134478 1021 Locate
ycf68 gene − 134030 134323 294 Locate
rrn16 gene − 134777 136267 1491 Locate
trnV-GAC gene − 136494 136565 72 Locate
rps12 gene + 138137 138927 791 Locate
rps7 gene + 138981 139448 468 Locate
ndhB gene + 139723 141934 2212 Locate
trnL-CAA gene + 142477 142557 81 Locate
ycf15 gene − 142817 143014 198 Locate
ycf2 gene − 143156 149965 6810 Locate
trnI-CAU gene + 150054 150127 74 Locate
rpl23 gene + 150287 150568 282 Locate
rpl2 gene + 150587 152068 1482 Locate
Status Available
Accession PZ130065.1
Length 152,168 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources