Scutellaria strigillosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420956.1 · 3–76 bp · −
psbA · MW420956.1 · 380–1,438 bp · −
trnK-UUU · MW420956.1 · 1,675–4,254 bp · −
matK · MW420956.1 · 1,966–3,501 bp · −
rps16 · MW420956.1 · 5,162–6,330 bp · −
trnQ-UUC · MW420956.1 · 7,461–7,532 bp · −
trnS-GCU · MW420956.1 · 8,661–8,748 bp · −
atpA · MW420956.1 · 10,538–12,061 bp · −
atpF · MW420956.1 · 12,135–13,372 bp · −
atpH · MW420956.1 · 13,741–13,986 bp · −
atpI · MW420956.1 · 14,977–15,720 bp · −
rps2 · MW420956.1 · 16,069–16,779 bp · −
rpoC2 · MW420956.1 · 16,996–21,201 bp · −
rpoC1 · MW420956.1 · 21,356–24,192 bp · −
rpoB · MW420956.1 · 24,219–27,431 bp · −
psbM · MW420956.1 · 30,493–30,597 bp · −
trnD-GUC · MW420956.1 · 31,123–31,196 bp · −
trnY-GUA · MW420956.1 · 31,310–31,393 bp · −
trnE-UUC · MW420956.1 · 31,453–31,525 bp · −
trnS-UCA · MW420956.1 · 36,154–36,246 bp · −
trnfM-CAU · MW420956.1 · 37,244–37,317 bp · −
rps14 · MW420956.1 · 37,467–37,769 bp · −
psaB · MW420956.1 · 37,897–40,101 bp · −
psaA · MW420956.1 · 40,127–42,379 bp · −
ycf3 · MW420956.1 · 43,056–44,979 bp · −
rps4 · MW420956.1 · 46,238–46,843 bp · −
trnT-UGU · MW420956.1 · 47,182–47,254 bp · −
ndhJ · MW420956.1 · 49,536–50,012 bp · −
ndhK · MW420956.1 · 50,120–50,797 bp · −
ndhC · MW420956.1 · 50,850–51,212 bp · −
trnV-UAC · MW420956.1 · 52,209–52,861 bp · −
atpE · MW420956.1 · 53,324–53,725 bp · −
atpB · MW420956.1 · 53,722–55,209 bp · −
pabJ · MW420956.1 · 64,966–65,088 bp · −
psbL · MW420956.1 · 65,222–65,338 bp · −
psbF · MW420956.1 · 65,362–65,481 bp · −
psbE · MW420956.1 · 65,496–65,747 bp · −
trnW-CCA · MW420956.1 · 67,158–67,231 bp · −
trnP-UGG · MW420956.1 · 67,401–67,474 bp · −
rpl20 · MW420956.1 · 69,270–69,656 bp · −
rps12 · MW420956.1 · 70,445–70,570 bp · −
rps12 · MW420956.1 · 97,791–98,581 bp · −
clpP · MW420956.1 · 70,713–72,647 bp · −
psbN · MW420956.1 · 75,015–75,146 bp · −
rpoA · MW420956.1 · 78,514–79,527 bp · −
rps11 · MW420956.1 · 79,599–80,015 bp · −
rpl36 · MW420956.1 · 80,117–80,230 bp · −
infA · MW420956.1 · 80,326–80,559 bp · −
rps8 · MW420956.1 · 80,679–81,089 bp · −
rpl14 · MW420956.1 · 81,248–81,616 bp · −
rpl16 · MW420956.1 · 81,743–82,986 bp · −
rps3 · MW420956.1 · 83,141–83,803 bp · −
rpl22 · MW420956.1 · 83,805–84,260 bp · −
rps19 · MW420956.1 · 84,320–84,598 bp · −
rpl2 · MW420956.1 · 84,653–86,135 bp · −
rpl23 · MW420956.1 · 86,154–86,435 bp · −
trnI-CAU · MW420956.1 · 86,595–86,668 bp · −
trnL-CAA · MW420956.1 · 94,161–94,241 bp · −
ndhB · MW420956.1 · 94,784–96,995 bp · −
rps7 · MW420956.1 · 97,270–97,737 bp · −
ndhF · MW420956.1 · 109,764–112,004 bp · −
ndhD · MW420956.1 · 114,527–116,056 bp · −
psaC · MW420956.1 · 116,148–116,393 bp · −
ndhE · MW420956.1 · 116,655–116,960 bp · −
ndhG · MW420956.1 · 117,181–117,711 bp · −
ndhI · MW420956.1 · 118,075–118,575 bp · −
ndhA · MW420956.1 · 118,656–120,747 bp · −
ndhH · MW420956.1 · 120,749–121,930 bp · −
rps15 · MW420956.1 · 122,033–122,305 bp · −
ycf1 · MW420956.1 · 122,576–128,119 bp · −
trnR-ACG · MW420956.1 · 129,060–129,133 bp · −
rrn5 · MW420956.1 · 129,368–129,488 bp · −
rrn4.5 · MW420956.1 · 129,736–129,838 bp · −
rrn23 · MW420956.1 · 129,937–132,749 bp · −
trnA-UGC · MW420956.1 · 132,919–133,804 bp · −
trnI-GAU · MW420956.1 · 133,870–134,889 bp · −
rrn16 · MW420956.1 · 135,188–136,678 bp · −
trnV-GAC · MW420956.1 · 136,906–136,977 bp · −
ycf15 · MW420956.1 · 143,231–143,428 bp · −
ycf2 · MW420956.1 · 143,570–150,379 bp · −
psbK · MW420956.1 · 7,857–8,042 bp · +
psbI · MW420956.1 · 8,433–8,543 bp · +
trnG-CGA · MW420956.1 · 9,436–10,195 bp · +
trnR-UCU · MW420956.1 · 10,370–10,441 bp · +
trnC-GCA · MW420956.1 · 28,595–28,665 bp · +
petN · MW420956.1 · 29,376–29,465 bp · +
trnT-GGU · MW420956.1 · 32,108–32,179 bp · +
psbD · MW420956.1 · 33,481–34,542 bp · +
psbC · MW420956.1 · 34,490–35,911 bp · +
psbZ · MW420956.1 · 36,566–36,754 bp · +
trnG-GCC · MW420956.1 · 37,026–37,096 bp · +
trnS-GGA · MW420956.1 · 45,866–45,952 bp · +
trnL-UAA · MW420956.1 · 47,940–48,509 bp · +
trnF-GAA · MW420956.1 · 48,815–48,887 bp · +
trnM-CAU · MW420956.1 · 53,042–53,114 bp · +
rbcL · MW420956.1 · 55,982–57,424 bp · +
accD · MW420956.1 · 58,135–59,601 bp · +
psaI · MW420956.1 · 60,332–60,442 bp · +
ycf4 · MW420956.1 · 60,876–61,430 bp · +
cemA · MW420956.1 · 62,119–62,778 bp · +
petA · MW420956.1 · 62,985–63,947 bp · +
petL · MW420956.1 · 66,656–66,751 bp · +
petG · MW420956.1 · 66,926–67,039 bp · +
psbJ · MW420956.1 · 67,746–67,880 bp · +
rpl33 · MW420956.1 · 68,352–68,552 bp · +
rps18 · MW420956.1 · 68,727–69,032 bp · +
rps12 · MW420956.1 · 138,555–139,345 bp · +
psbB · MW420956.1 · 73,122–74,648 bp · +
psbT · MW420956.1 · 74,840–74,941 bp · +
psbH · MW420956.1 · 75,250–75,471 bp · +
petB · MW420956.1 · 75,596–76,961 bp · +
petD · MW420956.1 · 77,150–78,351 bp · +
ycf2 · MW420956.1 · 86,757–93,566 bp · +
ycf15 · MW420956.1 · 93,708–93,905 bp · +
trnV-GAC · MW420956.1 · 100,159–100,230 bp · +
rrn16 · MW420956.1 · 100,458–101,948 bp · +
trnI-GAU · MW420956.1 · 102,247–103,266 bp · +
trnA-UGC · MW420956.1 · 103,332–104,217 bp · +
rrn23 · MW420956.1 · 104,387–107,199 bp · +
rrn4.5 · MW420956.1 · 107,298–107,400 bp · +
rrn5 · MW420956.1 · 107,648–107,768 bp · +
trnR-ACG · MW420956.1 · 108,003–108,076 bp · +
trnN-GUU · MW420956.1 · 108,623–108,694 bp · +
rpl32 · MW420956.1 · 112,521–112,697 bp · +
trnL-UAG · MW420956.1 · 113,144–113,223 bp · +
ccsA · MW420956.1 · 113,320–114,294 bp · +
trnN-GUU · MW420956.1 · 128,442–128,513 bp · +
rps7 · MW420956.1 · 139,399–139,866 bp · +
ndhB · MW420956.1 · 140,141–142,352 bp · +
trnL-CAA · MW420956.1 · 142,895–142,975 bp · +
trnI-CAU · MW420956.1 · 150,468–150,541 bp · +
rpl23 · MW420956.1 · 150,701–150,982 bp · +
rpl2 · MW420956.1 · 151,001–152,483 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria strigillosa
ANNOTATED PLASTOME
MW420956.1
152,578 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38144 76289 114434 152578 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1675 4254 2580 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5162 6330 1169 Locate
trnQ-UUC gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8433 8543 111 Locate
trnS-GCU gene − 8661 8748 88 Locate
trnG-CGA gene + 9436 10195 760 Locate
trnR-UCU gene + 10370 10441 72 Locate
atpA gene − 10538 12061 1524 Locate
atpF gene − 12135 13372 1238 Locate
atpH gene − 13741 13986 246 Locate
atpI gene − 14977 15720 744 Locate
rps2 gene − 16069 16779 711 Locate
rpoC2 gene − 16996 21201 4206 Locate
rpoC1 gene − 21356 24192 2837 Locate
rpoB gene − 24219 27431 3213 Locate
trnC-GCA gene + 28595 28665 71 Locate
petN gene + 29376 29465 90 Locate
psbM gene − 30493 30597 105 Locate
trnD-GUC gene − 31123 31196 74 Locate
trnY-GUA gene − 31310 31393 84 Locate
trnE-UUC gene − 31453 31525 73 Locate
trnT-GGU gene + 32108 32179 72 Locate
psbD gene + 33481 34542 1062 Locate
psbC gene + 34490 35911 1422 Locate
trnS-UCA gene − 36154 36246 93 Locate
psbZ gene + 36566 36754 189 Locate
trnG-GCC gene + 37026 37096 71 Locate
trnfM-CAU gene − 37244 37317 74 Locate
rps14 gene − 37467 37769 303 Locate
psaB gene − 37897 40101 2205 Locate
psaA gene − 40127 42379 2253 Locate
ycf3 gene − 43056 44979 1924 Locate
trnS-GGA gene + 45866 45952 87 Locate
rps4 gene − 46238 46843 606 Locate
trnT-UGU gene − 47182 47254 73 Locate
trnL-UAA gene + 47940 48509 570 Locate
trnF-GAA gene + 48815 48887 73 Locate
ndhJ gene − 49536 50012 477 Locate
ndhK gene − 50120 50797 678 Locate
ndhC gene − 50850 51212 363 Locate
trnV-UAC gene − 52209 52861 653 Locate
trnM-CAU gene + 53042 53114 73 Locate
atpE gene − 53324 53725 402 Locate
atpB gene − 53722 55209 1488 Locate
rbcL gene + 55982 57424 1443 Locate
accD gene + 58135 59601 1467 Locate
psaI gene + 60332 60442 111 Locate
ycf4 gene + 60876 61430 555 Locate
cemA gene + 62119 62778 660 Locate
petA gene + 62985 63947 963 Locate
pabJ gene − 64966 65088 123 Locate
psbL gene − 65222 65338 117 Locate
psbF gene − 65362 65481 120 Locate
psbE gene − 65496 65747 252 Locate
petL gene + 66656 66751 96 Locate
petG gene + 66926 67039 114 Locate
trnW-CCA gene − 67158 67231 74 Locate
trnP-UGG gene − 67401 67474 74 Locate
psbJ gene + 67746 67880 135 Locate
rpl33 gene + 68352 68552 201 Locate
rps18 gene + 68727 69032 306 Locate
rpl20 gene − 69270 69656 387 Locate
rps12 gene − 70445 70570 126 Locate
clpP gene − 70713 72647 1935 Locate
psbB gene + 73122 74648 1527 Locate
psbT gene + 74840 74941 102 Locate
psbN gene − 75015 75146 132 Locate
psbH gene + 75250 75471 222 Locate
petB gene + 75596 76961 1366 Locate
petD gene + 77150 78351 1202 Locate
rpoA gene − 78514 79527 1014 Locate
rps11 gene − 79599 80015 417 Locate
rpl36 gene − 80117 80230 114 Locate
infA gene − 80326 80559 234 Locate
rps8 gene − 80679 81089 411 Locate
rpl14 gene − 81248 81616 369 Locate
rpl16 gene − 81743 82986 1244 Locate
rps3 gene − 83141 83803 663 Locate
rpl22 gene − 83805 84260 456 Locate
rps19 gene − 84320 84598 279 Locate
rpl2 gene − 84653 86135 1483 Locate
rpl23 gene − 86154 86435 282 Locate
trnI-CAU gene − 86595 86668 74 Locate
ycf2 gene + 86757 93566 6810 Locate
ycf15 gene + 93708 93905 198 Locate
trnL-CAA gene − 94161 94241 81 Locate
ndhB gene − 94784 96995 2212 Locate
rps7 gene − 97270 97737 468 Locate
rps12 gene − 97791 98581 791 Locate
trnV-GAC gene + 100159 100230 72 Locate
rrn16 gene + 100458 101948 1491 Locate
trnI-GAU gene + 102247 103266 1020 Locate
trnA-UGC gene + 103332 104217 886 Locate
rrn23 gene + 104387 107199 2813 Locate
rrn4.5 gene + 107298 107400 103 Locate
rrn5 gene + 107648 107768 121 Locate
trnR-ACG gene + 108003 108076 74 Locate
trnN-GUU gene + 108623 108694 72 Locate
ndhF gene − 109764 112004 2241 Locate
rpl32 gene + 112521 112697 177 Locate
trnL-UAG gene + 113144 113223 80 Locate
ccsA gene + 113320 114294 975 Locate
ndhD gene − 114527 116056 1530 Locate
psaC gene − 116148 116393 246 Locate
ndhE gene − 116655 116960 306 Locate
ndhG gene − 117181 117711 531 Locate
ndhI gene − 118075 118575 501 Locate
ndhA gene − 118656 120747 2092 Locate
ndhH gene − 120749 121930 1182 Locate
rps15 gene − 122033 122305 273 Locate
ycf1 gene − 122576 128119 5544 Locate
trnN-GUU gene + 128442 128513 72 Locate
trnR-ACG gene − 129060 129133 74 Locate
rrn5 gene − 129368 129488 121 Locate
rrn4.5 gene − 129736 129838 103 Locate
rrn23 gene − 129937 132749 2813 Locate
trnA-UGC gene − 132919 133804 886 Locate
trnI-GAU gene − 133870 134889 1020 Locate
rrn16 gene − 135188 136678 1491 Locate
trnV-GAC gene − 136906 136977 72 Locate
rps12 gene + 138555 139345 791 Locate
rps7 gene + 139399 139866 468 Locate
ndhB gene + 140141 142352 2212 Locate
trnL-CAA gene + 142895 142975 81 Locate
ycf15 gene − 143231 143428 198 Locate
ycf2 gene − 143570 150379 6810 Locate
trnI-CAU gene + 150468 150541 74 Locate
rpl23 gene + 150701 150982 282 Locate
rpl2 gene + 151001 152483 1483 Locate
Status Available
Accession MW420956.1
Length 152,578 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources