Scutellaria subcaespitosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058249.1 · 10–83 bp · −
psbA · PQ058249.1 · 381–1,439 bp · −
trnK-UUU · PQ058249.1 · 1,681–4,262 bp · −
matK · PQ058249.1 · 1,971–3,497 bp · −
rps16 · PQ058249.1 · 5,163–6,320 bp · −
trnQ-UUG · PQ058249.1 · 7,468–7,539 bp · −
trnS-GCU · PQ058249.1 · 8,670–8,757 bp · −
atpA · PQ058249.1 · 10,550–12,073 bp · −
atpF · PQ058249.1 · 12,156–13,384 bp · −
atpH · PQ058249.1 · 13,748–13,993 bp · −
atpI · PQ058249.1 · 14,981–15,724 bp · −
rps2 · PQ058249.1 · 16,069–16,905 bp · −
rpoC2 · PQ058249.1 · 16,993–21,198 bp · −
rpoC1 · PQ058249.1 · 21,353–24,194 bp · −
rpoB · PQ058249.1 · 24,221–27,433 bp · −
psbM · PQ058249.1 · 30,454–30,558 bp · −
trnD-GUC · PQ058249.1 · 31,080–31,153 bp · −
trnY-GUA · PQ058249.1 · 31,267–31,350 bp · −
trnE-UUC · PQ058249.1 · 31,410–31,482 bp · −
trnS-UGA · PQ058249.1 · 36,099–36,190 bp · −
trnfM-CAU · PQ058249.1 · 37,190–37,263 bp · −
rps14 · PQ058249.1 · 37,418–37,720 bp · −
psaB · PQ058249.1 · 37,850–40,054 bp · −
psaA · PQ058249.1 · 40,080–42,332 bp · −
ycf3 · PQ058249.1 · 43,047–44,970 bp · −
rps4 · PQ058249.1 · 46,216–46,821 bp · −
trnT-UGU · PQ058249.1 · 47,163–47,235 bp · −
ndhJ · PQ058249.1 · 49,486–49,962 bp · −
ndhK · PQ058249.1 · 50,071–50,832 bp · −
ndhC · PQ058249.1 · 50,802–51,164 bp · −
trnV-UAC · PQ058249.1 · 52,141–52,793 bp · −
atpE · PQ058249.1 · 53,248–53,649 bp · −
atpB · PQ058249.1 · 53,646–55,142 bp · −
psbJ · PQ058249.1 · 64,878–65,000 bp · −
psbL · PQ058249.1 · 65,134–65,250 bp · −
psbF · PQ058249.1 · 65,274–65,393 bp · −
psbE · PQ058249.1 · 65,408–65,659 bp · −
trnW-CCA · PQ058249.1 · 67,038–67,111 bp · −
trnP-UGG · PQ058249.1 · 67,281–67,354 bp · −
rpl20 · PQ058249.1 · 69,102–69,488 bp · −
rps12 · PQ058249.1 · 70,271–70,396 bp · −
rps12 · PQ058249.1 · 97,538–98,328 bp · −
clpP · PQ058249.1 · 70,539–72,468 bp · −
psbN · PQ058249.1 · 74,805–74,936 bp · −
rpoA · PQ058249.1 · 78,501–79,301 bp · −
rps11 · PQ058249.1 · 79,373–79,789 bp · −
rpl36 · PQ058249.1 · 79,891–80,004 bp · −
infA · PQ058249.1 · 80,099–80,332 bp · −
rps8 · PQ058249.1 · 80,455–80,865 bp · −
rpl14 · PQ058249.1 · 81,017–81,385 bp · −
rpl16 · PQ058249.1 · 81,512–82,729 bp · −
rps3 · PQ058249.1 · 82,885–83,547 bp · −
rpl22 · PQ058249.1 · 83,549–84,004 bp · −
rps19 · PQ058249.1 · 84,064–84,342 bp · −
rpl2 · PQ058249.1 · 84,397–85,878 bp · −
rpl23 · PQ058249.1 · 85,897–86,178 bp · −
trnI-CAU · PQ058249.1 · 86,338–86,411 bp · −
trnL-CAA · PQ058249.1 · 93,908–93,988 bp · −
ndhB · PQ058249.1 · 94,531–96,742 bp · −
rps7 · PQ058249.1 · 97,017–97,484 bp · −
trnN-GUU · PQ058249.1 · 108,358–108,429 bp · −
ndhF · PQ058249.1 · 109,483–111,747 bp · −
ndhD · PQ058249.1 · 114,100–115,602 bp · −
psaC · PQ058249.1 · 115,730–115,975 bp · −
ndhE · PQ058249.1 · 116,227–116,532 bp · −
ndhG · PQ058249.1 · 116,749–117,279 bp · −
ndhI · PQ058249.1 · 117,645–118,145 bp · −
ndhA · PQ058249.1 · 118,221–120,333 bp · −
ndhH · PQ058249.1 · 120,335–121,516 bp · −
rps15 · PQ058249.1 · 121,613–121,885 bp · −
ycf1 · PQ058249.1 · 122,079–127,715 bp · −
trnR-ACG · PQ058249.1 · 128,554–128,627 bp · −
rrn5 · PQ058249.1 · 128,862–128,982 bp · −
rrn4.5 · PQ058249.1 · 129,230–129,332 bp · −
rrn23 · PQ058249.1 · 129,431–132,242 bp · −
trnA-UGC · PQ058249.1 · 132,405–133,291 bp · −
trnI-GAU · PQ058249.1 · 133,356–134,376 bp · −
ycf68 · PQ058249.1 · 133,928–134,221 bp · −
rrn16 · PQ058249.1 · 134,675–136,165 bp · −
trnV-GAC · PQ058249.1 · 136,392–136,463 bp · −
ycf15 · PQ058249.1 · 142,715–142,912 bp · −
ycf2 · PQ058249.1 · 143,054–149,863 bp · −
psbK · PQ058249.1 · 7,864–8,049 bp · +
psbI · PQ058249.1 · 8,438–8,548 bp · +
trnG-UCC · PQ058249.1 · 9,451–10,207 bp · +
trnR-UCU · PQ058249.1 · 10,382–10,453 bp · +
trnC-GCA · PQ058249.1 · 28,594–28,664 bp · +
petN · PQ058249.1 · 29,381–29,470 bp · +
trnT-GGU · PQ058249.1 · 32,058–32,129 bp · +
psbD · PQ058249.1 · 33,433–34,494 bp · +
psbC · PQ058249.1 · 34,442–35,863 bp · +
psbZ · PQ058249.1 · 36,506–36,694 bp · +
trnG-GCC · PQ058249.1 · 36,969–37,039 bp · +
trnS-GGA · PQ058249.1 · 45,854–45,940 bp · +
trnL-UAA · PQ058249.1 · 47,909–48,468 bp · +
trnF-GAA · PQ058249.1 · 48,773–48,845 bp · +
trnM-CAU · PQ058249.1 · 52,982–53,054 bp · +
rbcL · PQ058249.1 · 55,894–57,357 bp · +
accD · PQ058249.1 · 58,071–59,549 bp · +
psaI · PQ058249.1 · 60,256–60,366 bp · +
ycf4 · PQ058249.1 · 60,800–61,354 bp · +
cemA · PQ058249.1 · 62,103–62,702 bp · +
petA · PQ058249.1 · 62,909–63,871 bp · +
petL · PQ058249.1 · 66,535–66,630 bp · +
petG · PQ058249.1 · 66,806–66,919 bp · +
psaJ · PQ058249.1 · 67,563–67,760 bp · +
rpl33 · PQ058249.1 · 68,237–68,437 bp · +
rps18 · PQ058249.1 · 68,612–68,917 bp · +
rps12 · PQ058249.1 · 138,035–138,825 bp · +
psbB · PQ058249.1 · 72,920–74,446 bp · +
psbT · PQ058249.1 · 74,637–74,744 bp · +
psbH · PQ058249.1 · 75,040–75,261 bp · +
petB · PQ058249.1 · 75,386–76,758 bp · +
petD · PQ058249.1 · 76,941–78,146 bp · +
ycf2 · PQ058249.1 · 86,500–93,309 bp · +
ycf15 · PQ058249.1 · 93,451–93,648 bp · +
trnV-GAC · PQ058249.1 · 99,900–99,971 bp · +
rrn16 · PQ058249.1 · 100,198–101,688 bp · +
trnI-GAU · PQ058249.1 · 101,987–103,007 bp · +
trnA-UGC · PQ058249.1 · 103,072–103,958 bp · +
rrn23 · PQ058249.1 · 104,121–106,932 bp · +
rrn4.5 · PQ058249.1 · 107,031–107,133 bp · +
rrn5 · PQ058249.1 · 107,381–107,501 bp · +
trnR-ACG · PQ058249.1 · 107,736–107,809 bp · +
rpl32 · PQ058249.1 · 112,075–112,251 bp · +
trnL-UAG · PQ058249.1 · 112,702–112,781 bp · +
ccsA · PQ058249.1 · 112,887–113,861 bp · +
trnN-GUU · PQ058249.1 · 127,934–128,005 bp · +
rps7 · PQ058249.1 · 138,879–139,346 bp · +
ndhB · PQ058249.1 · 139,621–141,832 bp · +
trnL-CAA · PQ058249.1 · 142,375–142,455 bp · +
trnI-CAU · PQ058249.1 · 149,952–150,025 bp · +
rpl23 · PQ058249.1 · 150,185–150,466 bp · +
rpl2 · PQ058249.1 · 150,485–151,966 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria subcaespitosa
ANNOTATED PLASTOME
PQ058249.1
152,066 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38016 76033 114050 152066 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1681 4262 2582 Locate
matK gene − 1971 3497 1527 Locate
rps16 gene − 5163 6320 1158 Locate
trnQ-UUG gene − 7468 7539 72 Locate
psbK gene + 7864 8049 186 Locate
psbI gene + 8438 8548 111 Locate
trnS-GCU gene − 8670 8757 88 Locate
trnG-UCC gene + 9451 10207 757 Locate
trnR-UCU gene + 10382 10453 72 Locate
atpA gene − 10550 12073 1524 Locate
atpF gene − 12156 13384 1229 Locate
atpH gene − 13748 13993 246 Locate
atpI gene − 14981 15724 744 Locate
rps2 gene − 16069 16905 837 Locate
rpoC2 gene − 16993 21198 4206 Locate
rpoC1 gene − 21353 24194 2842 Locate
rpoB gene − 24221 27433 3213 Locate
trnC-GCA gene + 28594 28664 71 Locate
petN gene + 29381 29470 90 Locate
psbM gene − 30454 30558 105 Locate
trnD-GUC gene − 31080 31153 74 Locate
trnY-GUA gene − 31267 31350 84 Locate
trnE-UUC gene − 31410 31482 73 Locate
trnT-GGU gene + 32058 32129 72 Locate
psbD gene + 33433 34494 1062 Locate
psbC gene + 34442 35863 1422 Locate
trnS-UGA gene − 36099 36190 92 Locate
psbZ gene + 36506 36694 189 Locate
trnG-GCC gene + 36969 37039 71 Locate
trnfM-CAU gene − 37190 37263 74 Locate
rps14 gene − 37418 37720 303 Locate
psaB gene − 37850 40054 2205 Locate
psaA gene − 40080 42332 2253 Locate
ycf3 gene − 43047 44970 1924 Locate
trnS-GGA gene + 45854 45940 87 Locate
rps4 gene − 46216 46821 606 Locate
trnT-UGU gene − 47163 47235 73 Locate
trnL-UAA gene + 47909 48468 560 Locate
trnF-GAA gene + 48773 48845 73 Locate
ndhJ gene − 49486 49962 477 Locate
ndhK gene − 50071 50832 762 Locate
ndhC gene − 50802 51164 363 Locate
trnV-UAC gene − 52141 52793 653 Locate
trnM-CAU gene + 52982 53054 73 Locate
atpE gene − 53248 53649 402 Locate
atpB gene − 53646 55142 1497 Locate
rbcL gene + 55894 57357 1464 Locate
accD gene + 58071 59549 1479 Locate
psaI gene + 60256 60366 111 Locate
ycf4 gene + 60800 61354 555 Locate
cemA gene + 62103 62702 600 Locate
petA gene + 62909 63871 963 Locate
psbJ gene − 64878 65000 123 Locate
psbL gene − 65134 65250 117 Locate
psbF gene − 65274 65393 120 Locate
psbE gene − 65408 65659 252 Locate
petL gene + 66535 66630 96 Locate
petG gene + 66806 66919 114 Locate
trnW-CCA gene − 67038 67111 74 Locate
trnP-UGG gene − 67281 67354 74 Locate
psaJ gene + 67563 67760 198 Locate
rpl33 gene + 68237 68437 201 Locate
rps18 gene + 68612 68917 306 Locate
rpl20 gene − 69102 69488 387 Locate
rps12 gene − 70271 70396 126 Locate
clpP gene − 70539 72468 1930 Locate
psbB gene + 72920 74446 1527 Locate
psbT gene + 74637 74744 108 Locate
psbN gene − 74805 74936 132 Locate
psbH gene + 75040 75261 222 Locate
petB gene + 75386 76758 1373 Locate
petD gene + 76941 78146 1206 Locate
rpoA gene − 78501 79301 801 Locate
rps11 gene − 79373 79789 417 Locate
rpl36 gene − 79891 80004 114 Locate
infA gene − 80099 80332 234 Locate
rps8 gene − 80455 80865 411 Locate
rpl14 gene − 81017 81385 369 Locate
rpl16 gene − 81512 82729 1218 Locate
rps3 gene − 82885 83547 663 Locate
rpl22 gene − 83549 84004 456 Locate
rps19 gene − 84064 84342 279 Locate
rpl2 gene − 84397 85878 1482 Locate
rpl23 gene − 85897 86178 282 Locate
trnI-CAU gene − 86338 86411 74 Locate
ycf2 gene + 86500 93309 6810 Locate
ycf15 gene + 93451 93648 198 Locate
trnL-CAA gene − 93908 93988 81 Locate
ndhB gene − 94531 96742 2212 Locate
rps7 gene − 97017 97484 468 Locate
rps12 gene − 97538 98328 791 Locate
trnV-GAC gene + 99900 99971 72 Locate
rrn16 gene + 100198 101688 1491 Locate
trnI-GAU gene + 101987 103007 1021 Locate
trnA-UGC gene + 103072 103958 887 Locate
rrn23 gene + 104121 106932 2812 Locate
rrn4.5 gene + 107031 107133 103 Locate
rrn5 gene + 107381 107501 121 Locate
trnR-ACG gene + 107736 107809 74 Locate
trnN-GUU gene − 108358 108429 72 Locate
ndhF gene − 109483 111747 2265 Locate
rpl32 gene + 112075 112251 177 Locate
trnL-UAG gene + 112702 112781 80 Locate
ccsA gene + 112887 113861 975 Locate
ndhD gene − 114100 115602 1503 Locate
psaC gene − 115730 115975 246 Locate
ndhE gene − 116227 116532 306 Locate
ndhG gene − 116749 117279 531 Locate
ndhI gene − 117645 118145 501 Locate
ndhA gene − 118221 120333 2113 Locate
ndhH gene − 120335 121516 1182 Locate
rps15 gene − 121613 121885 273 Locate
ycf1 gene − 122079 127715 5637 Locate
trnN-GUU gene + 127934 128005 72 Locate
trnR-ACG gene − 128554 128627 74 Locate
rrn5 gene − 128862 128982 121 Locate
rrn4.5 gene − 129230 129332 103 Locate
rrn23 gene − 129431 132242 2812 Locate
trnA-UGC gene − 132405 133291 887 Locate
trnI-GAU gene − 133356 134376 1021 Locate
ycf68 gene − 133928 134221 294 Locate
rrn16 gene − 134675 136165 1491 Locate
trnV-GAC gene − 136392 136463 72 Locate
rps12 gene + 138035 138825 791 Locate
rps7 gene + 138879 139346 468 Locate
ndhB gene + 139621 141832 2212 Locate
trnL-CAA gene + 142375 142455 81 Locate
ycf15 gene − 142715 142912 198 Locate
ycf2 gene − 143054 149863 6810 Locate
trnI-CAU gene + 149952 150025 74 Locate
rpl23 gene + 150185 150466 282 Locate
rpl2 gene + 150485 151966 1482 Locate
Status Available
Accession PQ058249.1
Length 152,066 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources