Scutellaria suffrutescens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420967.1 · 3–76 bp · −
psbA · MW420967.1 · 378–1,436 bp · −
trnK-UUU · MW420967.1 · 1,673–4,247 bp · −
matK · MW420967.1 · 1,964–3,499 bp · −
rps16 · MW420967.1 · 5,127–6,273 bp · −
trnQ-UUC · MW420967.1 · 7,367–7,438 bp · −
trnS-GCU · MW420967.1 · 8,565–8,652 bp · −
atpA · MW420967.1 · 10,442–11,965 bp · −
atpF · MW420967.1 · 12,050–13,280 bp · −
atpH · MW420967.1 · 13,639–13,884 bp · −
atpI · MW420967.1 · 14,873–15,616 bp · −
rps2 · MW420967.1 · 15,965–16,675 bp · −
rpoC2 · MW420967.1 · 16,887–21,080 bp · −
rpoC1 · MW420967.1 · 21,235–24,066 bp · −
rpoB · MW420967.1 · 24,093–27,305 bp · −
psbM · MW420967.1 · 30,334–30,438 bp · −
trnD-GUC · MW420967.1 · 30,964–31,037 bp · −
trnY-GUA · MW420967.1 · 31,151–31,234 bp · −
trnE-UUC · MW420967.1 · 31,294–31,366 bp · −
trnS-UCA · MW420967.1 · 36,013–36,105 bp · −
trnfM-CAU · MW420967.1 · 37,106–37,179 bp · −
rps14 · MW420967.1 · 37,329–37,631 bp · −
psaB · MW420967.1 · 37,759–39,963 bp · −
psaA · MW420967.1 · 39,989–42,241 bp · −
ycf3 · MW420967.1 · 42,951–44,873 bp · −
rps4 · MW420967.1 · 46,128–46,733 bp · −
trnT-UGU · MW420967.1 · 47,061–47,133 bp · −
ndhJ · MW420967.1 · 49,371–49,847 bp · −
ndhK · MW420967.1 · 49,955–50,632 bp · −
ndhC · MW420967.1 · 50,686–51,048 bp · −
trnV-UAC · MW420967.1 · 52,036–52,688 bp · −
atpE · MW420967.1 · 53,136–53,537 bp · −
atpB · MW420967.1 · 53,534–55,030 bp · −
pabJ · MW420967.1 · 64,740–64,862 bp · −
psbL · MW420967.1 · 64,996–65,112 bp · −
psbF · MW420967.1 · 65,136–65,255 bp · −
psbE · MW420967.1 · 65,270–65,521 bp · −
trnW-CCA · MW420967.1 · 66,933–67,006 bp · −
trnP-UGG · MW420967.1 · 67,170–67,243 bp · −
rpl20 · MW420967.1 · 69,035–69,421 bp · −
rps12 · MW420967.1 · 70,209–70,334 bp · −
rps12 · MW420967.1 · 97,509–98,299 bp · −
clpP · MW420967.1 · 70,476–72,425 bp · −
psbN · MW420967.1 · 74,768–74,899 bp · −
rpoA · MW420967.1 · 78,286–79,299 bp · −
rps11 · MW420967.1 · 79,371–79,787 bp · −
rpl36 · MW420967.1 · 79,889–80,002 bp · −
infA · MW420967.1 · 80,098–80,331 bp · −
rps8 · MW420967.1 · 80,451–80,861 bp · −
rpl14 · MW420967.1 · 81,019–81,387 bp · −
rpl16 · MW420967.1 · 81,517–82,700 bp · −
rps3 · MW420967.1 · 82,855–83,517 bp · −
rpl22 · MW420967.1 · 83,519–83,974 bp · −
rps19 · MW420967.1 · 84,038–84,316 bp · −
rpl2 · MW420967.1 · 84,370–85,852 bp · −
rpl23 · MW420967.1 · 85,871–86,152 bp · −
trnI-CAU · MW420967.1 · 86,312–86,385 bp · −
trnL-CAA · MW420967.1 · 93,867–93,947 bp · −
ndhB · MW420967.1 · 94,503–96,714 bp · −
rps7 · MW420967.1 · 96,988–97,455 bp · −
ndhF · MW420967.1 · 109,456–111,696 bp · −
ndhD · MW420967.1 · 114,225–115,730 bp · −
psaC · MW420967.1 · 115,854–116,099 bp · −
ndhE · MW420967.1 · 116,362–116,667 bp · −
ndhG · MW420967.1 · 116,888–117,418 bp · −
ndhI · MW420967.1 · 117,784–118,284 bp · −
ndhA · MW420967.1 · 118,366–120,463 bp · −
ndhH · MW420967.1 · 120,465–121,646 bp · −
rps15 · MW420967.1 · 121,743–122,015 bp · −
ycf1 · MW420967.1 · 122,289–127,751 bp · −
trnR-ACG · MW420967.1 · 128,699–128,772 bp · −
rrn5 · MW420967.1 · 128,997–129,117 bp · −
rrn4.5 · MW420967.1 · 129,365–129,467 bp · −
rrn23 · MW420967.1 · 129,566–132,378 bp · −
trnA-UGC · MW420967.1 · 132,541–133,425 bp · −
trnI-GAU · MW420967.1 · 133,491–134,510 bp · −
rrn16 · MW420967.1 · 134,809–136,299 bp · −
trnV-GAC · MW420967.1 · 136,527–136,598 bp · −
ycf15 · MW420967.1 · 142,847–143,044 bp · −
ycf2 · MW420967.1 · 143,186–149,986 bp · −
psbK · MW420967.1 · 7,763–7,948 bp · +
psbI · MW420967.1 · 8,345–8,455 bp · +
trnG-CGA · MW420967.1 · 9,343–10,099 bp · +
trnR-UCU · MW420967.1 · 10,274–10,345 bp · +
trnC-GCA · MW420967.1 · 28,463–28,533 bp · +
petN · MW420967.1 · 29,237–29,326 bp · +
trnT-GGU · MW420967.1 · 31,956–32,027 bp · +
psbD · MW420967.1 · 33,332–34,393 bp · +
psbC · MW420967.1 · 34,341–35,762 bp · +
psbZ · MW420967.1 · 36,425–36,613 bp · +
trnG-GCC · MW420967.1 · 36,885–36,955 bp · +
trnS-GGA · MW420967.1 · 45,757–45,843 bp · +
trnL-UAA · MW420967.1 · 47,766–48,327 bp · +
trnF-GAA · MW420967.1 · 48,632–48,704 bp · +
trnM-CAU · MW420967.1 · 52,869–52,941 bp · +
rbcL · MW420967.1 · 55,798–57,240 bp · +
accD · MW420967.1 · 57,969–59,447 bp · +
psaI · MW420967.1 · 60,155–60,265 bp · +
ycf4 · MW420967.1 · 60,692–61,246 bp · +
cemA · MW420967.1 · 61,927–62,586 bp · +
petA · MW420967.1 · 62,792–63,754 bp · +
petL · MW420967.1 · 66,430–66,525 bp · +
petG · MW420967.1 · 66,701–66,814 bp · +
psbJ · MW420967.1 · 67,516–67,650 bp · +
rpl33 · MW420967.1 · 68,122–68,322 bp · +
rps18 · MW420967.1 · 68,496–68,801 bp · +
rps12 · MW420967.1 · 138,161–138,951 bp · +
psbB · MW420967.1 · 72,880–74,406 bp · +
psbT · MW420967.1 · 74,598–74,699 bp · +
psbH · MW420967.1 · 75,003–75,224 bp · +
petB · MW420967.1 · 75,349–76,723 bp · +
petD · MW420967.1 · 76,912–78,123 bp · +
ycf2 · MW420967.1 · 86,474–93,274 bp · +
ycf15 · MW420967.1 · 93,416–93,613 bp · +
trnV-GAC · MW420967.1 · 99,862–99,933 bp · +
rrn16 · MW420967.1 · 100,161–101,651 bp · +
trnI-GAU · MW420967.1 · 101,950–102,969 bp · +
trnA-UGC · MW420967.1 · 103,035–103,919 bp · +
rrn23 · MW420967.1 · 104,082–106,894 bp · +
rrn4.5 · MW420967.1 · 106,993–107,095 bp · +
rrn5 · MW420967.1 · 107,343–107,463 bp · +
trnR-ACG · MW420967.1 · 107,688–107,761 bp · +
trnN-GUU · MW420967.1 · 108,308–108,379 bp · +
rpl32 · MW420967.1 · 112,220–112,396 bp · +
trnL-UAG · MW420967.1 · 112,838–112,917 bp · +
ccsA · MW420967.1 · 113,013–113,987 bp · +
trnN-GUU · MW420967.1 · 128,081–128,152 bp · +
rps7 · MW420967.1 · 139,005–139,472 bp · +
ndhB · MW420967.1 · 139,746–141,957 bp · +
trnL-CAA · MW420967.1 · 142,513–142,593 bp · +
trnI-CAU · MW420967.1 · 150,075–150,148 bp · +
rpl23 · MW420967.1 · 150,308–150,589 bp · +
rpl2 · MW420967.1 · 150,608–152,090 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria suffrutescens
ANNOTATED PLASTOME
MW420967.1
152,184 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38046 76092 114138 152184 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1673 4247 2575 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5127 6273 1147 Locate
trnQ-UUC gene − 7367 7438 72 Locate
psbK gene + 7763 7948 186 Locate
psbI gene + 8345 8455 111 Locate
trnS-GCU gene − 8565 8652 88 Locate
trnG-CGA gene + 9343 10099 757 Locate
trnR-UCU gene + 10274 10345 72 Locate
atpA gene − 10442 11965 1524 Locate
atpF gene − 12050 13280 1231 Locate
atpH gene − 13639 13884 246 Locate
atpI gene − 14873 15616 744 Locate
rps2 gene − 15965 16675 711 Locate
rpoC2 gene − 16887 21080 4194 Locate
rpoC1 gene − 21235 24066 2832 Locate
rpoB gene − 24093 27305 3213 Locate
trnC-GCA gene + 28463 28533 71 Locate
petN gene + 29237 29326 90 Locate
psbM gene − 30334 30438 105 Locate
trnD-GUC gene − 30964 31037 74 Locate
trnY-GUA gene − 31151 31234 84 Locate
trnE-UUC gene − 31294 31366 73 Locate
trnT-GGU gene + 31956 32027 72 Locate
psbD gene + 33332 34393 1062 Locate
psbC gene + 34341 35762 1422 Locate
trnS-UCA gene − 36013 36105 93 Locate
psbZ gene + 36425 36613 189 Locate
trnG-GCC gene + 36885 36955 71 Locate
trnfM-CAU gene − 37106 37179 74 Locate
rps14 gene − 37329 37631 303 Locate
psaB gene − 37759 39963 2205 Locate
psaA gene − 39989 42241 2253 Locate
ycf3 gene − 42951 44873 1923 Locate
trnS-GGA gene + 45757 45843 87 Locate
rps4 gene − 46128 46733 606 Locate
trnT-UGU gene − 47061 47133 73 Locate
trnL-UAA gene + 47766 48327 562 Locate
trnF-GAA gene + 48632 48704 73 Locate
ndhJ gene − 49371 49847 477 Locate
ndhK gene − 49955 50632 678 Locate
ndhC gene − 50686 51048 363 Locate
trnV-UAC gene − 52036 52688 653 Locate
trnM-CAU gene + 52869 52941 73 Locate
atpE gene − 53136 53537 402 Locate
atpB gene − 53534 55030 1497 Locate
rbcL gene + 55798 57240 1443 Locate
accD gene + 57969 59447 1479 Locate
psaI gene + 60155 60265 111 Locate
ycf4 gene + 60692 61246 555 Locate
cemA gene + 61927 62586 660 Locate
petA gene + 62792 63754 963 Locate
pabJ gene − 64740 64862 123 Locate
psbL gene − 64996 65112 117 Locate
psbF gene − 65136 65255 120 Locate
psbE gene − 65270 65521 252 Locate
petL gene + 66430 66525 96 Locate
petG gene + 66701 66814 114 Locate
trnW-CCA gene − 66933 67006 74 Locate
trnP-UGG gene − 67170 67243 74 Locate
psbJ gene + 67516 67650 135 Locate
rpl33 gene + 68122 68322 201 Locate
rps18 gene + 68496 68801 306 Locate
rpl20 gene − 69035 69421 387 Locate
rps12 gene − 70209 70334 126 Locate
clpP gene − 70476 72425 1950 Locate
psbB gene + 72880 74406 1527 Locate
psbT gene + 74598 74699 102 Locate
psbN gene − 74768 74899 132 Locate
psbH gene + 75003 75224 222 Locate
petB gene + 75349 76723 1375 Locate
petD gene + 76912 78123 1212 Locate
rpoA gene − 78286 79299 1014 Locate
rps11 gene − 79371 79787 417 Locate
rpl36 gene − 79889 80002 114 Locate
infA gene − 80098 80331 234 Locate
rps8 gene − 80451 80861 411 Locate
rpl14 gene − 81019 81387 369 Locate
rpl16 gene − 81517 82700 1184 Locate
rps3 gene − 82855 83517 663 Locate
rpl22 gene − 83519 83974 456 Locate
rps19 gene − 84038 84316 279 Locate
rpl2 gene − 84370 85852 1483 Locate
rpl23 gene − 85871 86152 282 Locate
trnI-CAU gene − 86312 86385 74 Locate
ycf2 gene + 86474 93274 6801 Locate
ycf15 gene + 93416 93613 198 Locate
trnL-CAA gene − 93867 93947 81 Locate
ndhB gene − 94503 96714 2212 Locate
rps7 gene − 96988 97455 468 Locate
rps12 gene − 97509 98299 791 Locate
trnV-GAC gene + 99862 99933 72 Locate
rrn16 gene + 100161 101651 1491 Locate
trnI-GAU gene + 101950 102969 1020 Locate
trnA-UGC gene + 103035 103919 885 Locate
rrn23 gene + 104082 106894 2813 Locate
rrn4.5 gene + 106993 107095 103 Locate
rrn5 gene + 107343 107463 121 Locate
trnR-ACG gene + 107688 107761 74 Locate
trnN-GUU gene + 108308 108379 72 Locate
ndhF gene − 109456 111696 2241 Locate
rpl32 gene + 112220 112396 177 Locate
trnL-UAG gene + 112838 112917 80 Locate
ccsA gene + 113013 113987 975 Locate
ndhD gene − 114225 115730 1506 Locate
psaC gene − 115854 116099 246 Locate
ndhE gene − 116362 116667 306 Locate
ndhG gene − 116888 117418 531 Locate
ndhI gene − 117784 118284 501 Locate
ndhA gene − 118366 120463 2098 Locate
ndhH gene − 120465 121646 1182 Locate
rps15 gene − 121743 122015 273 Locate
ycf1 gene − 122289 127751 5463 Locate
trnN-GUU gene + 128081 128152 72 Locate
trnR-ACG gene − 128699 128772 74 Locate
rrn5 gene − 128997 129117 121 Locate
rrn4.5 gene − 129365 129467 103 Locate
rrn23 gene − 129566 132378 2813 Locate
trnA-UGC gene − 132541 133425 885 Locate
trnI-GAU gene − 133491 134510 1020 Locate
rrn16 gene − 134809 136299 1491 Locate
trnV-GAC gene − 136527 136598 72 Locate
rps12 gene + 138161 138951 791 Locate
rps7 gene + 139005 139472 468 Locate
ndhB gene + 139746 141957 2212 Locate
trnL-CAA gene + 142513 142593 81 Locate
ycf15 gene − 142847 143044 198 Locate
ycf2 gene − 143186 149986 6801 Locate
trnI-CAU gene + 150075 150148 74 Locate
rpl23 gene + 150308 150589 282 Locate
rpl2 gene + 150608 152090 1483 Locate
Status Available
Accession MW420967.1
Length 152,184 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources