Scutellaria tashiroi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059348.1 · 3–76 bp · −
psbA · PQ059348.1 · 375–1,433 bp · −
trnK-UUU · PQ059348.1 · 1,675–4,263 bp · −
matK · PQ059348.1 · 1,970–3,505 bp · −
rps16 · PQ059348.1 · 5,136–6,305 bp · −
trnQ-UUG · PQ059348.1 · 7,335–7,406 bp · −
trnS-GCU · PQ059348.1 · 8,539–8,626 bp · −
atpA · PQ059348.1 · 10,410–11,933 bp · −
atpF · PQ059348.1 · 12,016–13,243 bp · −
atpH · PQ059348.1 · 13,600–13,845 bp · −
atpI · PQ059348.1 · 14,833–15,576 bp · −
rps2 · PQ059348.1 · 15,925–16,635 bp · −
rpoC2 · PQ059348.1 · 16,852–21,057 bp · −
rpoC1 · PQ059348.1 · 21,212–24,041 bp · −
rpoB · PQ059348.1 · 24,068–27,280 bp · −
psbM · PQ059348.1 · 30,388–30,492 bp · −
trnD-GUC · PQ059348.1 · 31,019–31,092 bp · −
trnY-GUA · PQ059348.1 · 31,206–31,289 bp · −
trnE-UUC · PQ059348.1 · 31,349–31,421 bp · −
trnS-UGA · PQ059348.1 · 35,946–36,037 bp · −
trnfM-CAU · PQ059348.1 · 37,042–37,115 bp · −
rps14 · PQ059348.1 · 37,265–37,567 bp · −
psaB · PQ059348.1 · 37,695–39,899 bp · −
psaA · PQ059348.1 · 39,925–42,177 bp · −
ycf3 · PQ059348.1 · 42,845–44,766 bp · −
rps4 · PQ059348.1 · 46,026–46,631 bp · −
trnT-UGU · PQ059348.1 · 46,972–47,044 bp · −
ndhJ · PQ059348.1 · 49,317–49,793 bp · −
ndhK · PQ059348.1 · 49,901–50,578 bp · −
ndhC · PQ059348.1 · 50,631–50,993 bp · −
trnV-UAC · PQ059348.1 · 51,849–52,501 bp · −
atpE · PQ059348.1 · 52,970–53,371 bp · −
atpB · PQ059348.1 · 53,368–54,855 bp · −
psbJ · PQ059348.1 · 64,482–64,604 bp · −
psbL · PQ059348.1 · 64,738–64,854 bp · −
psbF · PQ059348.1 · 64,878–64,997 bp · −
psbE · PQ059348.1 · 65,012–65,263 bp · −
trnW-CCA · PQ059348.1 · 66,675–66,748 bp · −
trnP-UGG · PQ059348.1 · 66,918–66,991 bp · −
rpl20 · PQ059348.1 · 68,789–69,175 bp · −
rps12 · PQ059348.1 · 69,976–70,089 bp · −
rps12 · PQ059348.1 · 97,303–98,093 bp · −
clpP · PQ059348.1 · 70,232–72,164 bp · −
psbN · PQ059348.1 · 74,534–74,665 bp · −
rpoA · PQ059348.1 · 78,035–79,048 bp · −
rps11 · PQ059348.1 · 79,120–79,536 bp · −
rpl36 · PQ059348.1 · 79,638–79,751 bp · −
infA · PQ059348.1 · 79,847–80,080 bp · −
rps8 · PQ059348.1 · 80,201–80,611 bp · −
rpl14 · PQ059348.1 · 80,781–81,149 bp · −
rpl16 · PQ059348.1 · 81,276–82,498 bp · −
rps3 · PQ059348.1 · 82,653–83,315 bp · −
rpl22 · PQ059348.1 · 83,317–83,772 bp · −
rps19 · PQ059348.1 · 83,832–84,110 bp · −
rpl2 · PQ059348.1 · 84,165–85,647 bp · −
rpl23 · PQ059348.1 · 85,666–85,947 bp · −
trnI-CAU · PQ059348.1 · 86,107–86,180 bp · −
trnL-CAA · PQ059348.1 · 93,673–93,753 bp · −
ndhB · PQ059348.1 · 94,296–96,507 bp · −
rps7 · PQ059348.1 · 96,782–97,249 bp · −
trnN-GUU · PQ059348.1 · 108,124–108,195 bp · −
ndhF · PQ059348.1 · 109,272–111,512 bp · −
ndhD · PQ059348.1 · 114,038–115,561 bp · −
psaC · PQ059348.1 · 115,660–115,905 bp · −
ndhE · PQ059348.1 · 116,162–116,467 bp · −
ndhG · PQ059348.1 · 116,698–117,228 bp · −
ndhI · PQ059348.1 · 117,593–118,093 bp · −
ndhA · PQ059348.1 · 118,174–120,266 bp · −
ndhH · PQ059348.1 · 120,268–121,479 bp · −
rps15 · PQ059348.1 · 121,552–121,884 bp · −
ycf1 · PQ059348.1 · 122,091–127,727 bp · −
trnR-ACG · PQ059348.1 · 128,564–128,637 bp · −
rrn5 · PQ059348.1 · 128,872–128,992 bp · −
rrn4.5 · PQ059348.1 · 129,240–129,342 bp · −
rrn23 · PQ059348.1 · 129,441–132,253 bp · −
trnA-UGC · PQ059348.1 · 132,423–133,305 bp · −
trnI-GAU · PQ059348.1 · 133,370–134,390 bp · −
ycf68 · PQ059348.1 · 133,996–134,235 bp · −
rrn16 · PQ059348.1 · 134,689–136,179 bp · −
trnV-GAC · PQ059348.1 · 136,407–136,478 bp · −
ycf15 · PQ059348.1 · 142,724–142,972 bp · −
ycf2 · PQ059348.1 · 143,063–149,872 bp · −
psbK · PQ059348.1 · 7,731–7,916 bp · +
psbI · PQ059348.1 · 8,308–8,418 bp · +
trnG-UCC · PQ059348.1 · 9,311–10,071 bp · +
trnR-UCU · PQ059348.1 · 10,242–10,313 bp · +
trnC-GCA · PQ059348.1 · 28,439–28,509 bp · +
petN · PQ059348.1 · 29,215–29,304 bp · +
trnT-GGU · PQ059348.1 · 31,901–31,972 bp · +
psbD · PQ059348.1 · 33,280–34,341 bp · +
psbC · PQ059348.1 · 34,289–35,710 bp · +
psbZ · PQ059348.1 · 36,357–36,545 bp · +
trnG-GCC · PQ059348.1 · 36,817–36,887 bp · +
trnS-GGA · PQ059348.1 · 45,654–45,740 bp · +
trnL-UAA · PQ059348.1 · 47,729–48,289 bp · +
trnF-GAA · PQ059348.1 · 48,596–48,668 bp · +
trnM-CAU · PQ059348.1 · 52,682–52,754 bp · +
rbcL · PQ059348.1 · 55,608–57,071 bp · +
accD · PQ059348.1 · 57,810–59,276 bp · +
psaI · PQ059348.1 · 59,851–59,961 bp · +
ycf4 · PQ059348.1 · 60,387–60,941 bp · +
cemA · PQ059348.1 · 61,679–62,278 bp · +
petA · PQ059348.1 · 62,485–63,447 bp · +
petL · PQ059348.1 · 66,172–66,267 bp · +
petG · PQ059348.1 · 66,443–66,556 bp · +
psaJ · PQ059348.1 · 67,264–67,398 bp · +
rpl33 · PQ059348.1 · 67,872–68,072 bp · +
rps18 · PQ059348.1 · 68,247–68,552 bp · +
rps12 · PQ059348.1 · 138,048–138,838 bp · +
psbB · PQ059348.1 · 72,641–74,167 bp · +
psbT · PQ059348.1 · 74,359–74,460 bp · +
psbH · PQ059348.1 · 74,769–74,990 bp · +
petB · PQ059348.1 · 75,115–76,482 bp · +
petD · PQ059348.1 · 76,671–77,872 bp · +
ycf2 · PQ059348.1 · 86,269–93,078 bp · +
ycf15 · PQ059348.1 · 93,169–93,417 bp · +
trnV-GAC · PQ059348.1 · 99,663–99,734 bp · +
rrn16 · PQ059348.1 · 99,962–101,452 bp · +
trnI-GAU · PQ059348.1 · 101,751–102,771 bp · +
trnA-UGC · PQ059348.1 · 102,836–103,718 bp · +
rrn23 · PQ059348.1 · 103,888–106,700 bp · +
rrn4.5 · PQ059348.1 · 106,799–106,901 bp · +
rrn5 · PQ059348.1 · 107,149–107,269 bp · +
trnR-ACG · PQ059348.1 · 107,504–107,577 bp · +
rpl32 · PQ059348.1 · 112,033–112,209 bp · +
trnL-UAG · PQ059348.1 · 112,655–112,734 bp · +
ccsA · PQ059348.1 · 112,831–113,805 bp · +
trnN-GUU · PQ059348.1 · 127,946–128,017 bp · +
rps7 · PQ059348.1 · 138,892–139,359 bp · +
ndhB · PQ059348.1 · 139,634–141,845 bp · +
trnL-CAA · PQ059348.1 · 142,388–142,468 bp · +
trnI-CAU · PQ059348.1 · 149,961–150,034 bp · +
rpl23 · PQ059348.1 · 150,194–150,475 bp · +
rpl2 · PQ059348.1 · 150,494–151,976 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tashiroi
ANNOTATED PLASTOME
PQ059348.1
152,071 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38018 76036 114053 152071 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4263 2589 Locate
matK gene − 1970 3505 1536 Locate
rps16 gene − 5136 6305 1170 Locate
trnQ-UUG gene − 7335 7406 72 Locate
psbK gene + 7731 7916 186 Locate
psbI gene + 8308 8418 111 Locate
trnS-GCU gene − 8539 8626 88 Locate
trnG-UCC gene + 9311 10071 761 Locate
trnR-UCU gene + 10242 10313 72 Locate
atpA gene − 10410 11933 1524 Locate
atpF gene − 12016 13243 1228 Locate
atpH gene − 13600 13845 246 Locate
atpI gene − 14833 15576 744 Locate
rps2 gene − 15925 16635 711 Locate
rpoC2 gene − 16852 21057 4206 Locate
rpoC1 gene − 21212 24041 2830 Locate
rpoB gene − 24068 27280 3213 Locate
trnC-GCA gene + 28439 28509 71 Locate
petN gene + 29215 29304 90 Locate
psbM gene − 30388 30492 105 Locate
trnD-GUC gene − 31019 31092 74 Locate
trnY-GUA gene − 31206 31289 84 Locate
trnE-UUC gene − 31349 31421 73 Locate
trnT-GGU gene + 31901 31972 72 Locate
psbD gene + 33280 34341 1062 Locate
psbC gene + 34289 35710 1422 Locate
trnS-UGA gene − 35946 36037 92 Locate
psbZ gene + 36357 36545 189 Locate
trnG-GCC gene + 36817 36887 71 Locate
trnfM-CAU gene − 37042 37115 74 Locate
rps14 gene − 37265 37567 303 Locate
psaB gene − 37695 39899 2205 Locate
psaA gene − 39925 42177 2253 Locate
ycf3 gene − 42845 44766 1922 Locate
trnS-GGA gene + 45654 45740 87 Locate
rps4 gene − 46026 46631 606 Locate
trnT-UGU gene − 46972 47044 73 Locate
trnL-UAA gene + 47729 48289 561 Locate
trnF-GAA gene + 48596 48668 73 Locate
ndhJ gene − 49317 49793 477 Locate
ndhK gene − 49901 50578 678 Locate
ndhC gene − 50631 50993 363 Locate
trnV-UAC gene − 51849 52501 653 Locate
trnM-CAU gene + 52682 52754 73 Locate
atpE gene − 52970 53371 402 Locate
atpB gene − 53368 54855 1488 Locate
rbcL gene + 55608 57071 1464 Locate
accD gene + 57810 59276 1467 Locate
psaI gene + 59851 59961 111 Locate
ycf4 gene + 60387 60941 555 Locate
cemA gene + 61679 62278 600 Locate
petA gene + 62485 63447 963 Locate
psbJ gene − 64482 64604 123 Locate
psbL gene − 64738 64854 117 Locate
psbF gene − 64878 64997 120 Locate
psbE gene − 65012 65263 252 Locate
petL gene + 66172 66267 96 Locate
petG gene + 66443 66556 114 Locate
trnW-CCA gene − 66675 66748 74 Locate
trnP-UGG gene − 66918 66991 74 Locate
psaJ gene + 67264 67398 135 Locate
rpl33 gene + 67872 68072 201 Locate
rps18 gene + 68247 68552 306 Locate
rpl20 gene − 68789 69175 387 Locate
rps12 gene − 69976 70089 114 Locate
clpP gene − 70232 72164 1933 Locate
psbB gene + 72641 74167 1527 Locate
psbT gene + 74359 74460 102 Locate
psbN gene − 74534 74665 132 Locate
psbH gene + 74769 74990 222 Locate
petB gene + 75115 76482 1368 Locate
petD gene + 76671 77872 1202 Locate
rpoA gene − 78035 79048 1014 Locate
rps11 gene − 79120 79536 417 Locate
rpl36 gene − 79638 79751 114 Locate
infA gene − 79847 80080 234 Locate
rps8 gene − 80201 80611 411 Locate
rpl14 gene − 80781 81149 369 Locate
rpl16 gene − 81276 82498 1223 Locate
rps3 gene − 82653 83315 663 Locate
rpl22 gene − 83317 83772 456 Locate
rps19 gene − 83832 84110 279 Locate
rpl2 gene − 84165 85647 1483 Locate
rpl23 gene − 85666 85947 282 Locate
trnI-CAU gene − 86107 86180 74 Locate
ycf2 gene + 86269 93078 6810 Locate
ycf15 gene + 93169 93417 249 Locate
trnL-CAA gene − 93673 93753 81 Locate
ndhB gene − 94296 96507 2212 Locate
rps7 gene − 96782 97249 468 Locate
rps12 gene − 97303 98093 791 Locate
trnV-GAC gene + 99663 99734 72 Locate
rrn16 gene + 99962 101452 1491 Locate
trnI-GAU gene + 101751 102771 1021 Locate
trnA-UGC gene + 102836 103718 883 Locate
rrn23 gene + 103888 106700 2813 Locate
rrn4.5 gene + 106799 106901 103 Locate
rrn5 gene + 107149 107269 121 Locate
trnR-ACG gene + 107504 107577 74 Locate
trnN-GUU gene − 108124 108195 72 Locate
ndhF gene − 109272 111512 2241 Locate
rpl32 gene + 112033 112209 177 Locate
trnL-UAG gene + 112655 112734 80 Locate
ccsA gene + 112831 113805 975 Locate
ndhD gene − 114038 115561 1524 Locate
psaC gene − 115660 115905 246 Locate
ndhE gene − 116162 116467 306 Locate
ndhG gene − 116698 117228 531 Locate
ndhI gene − 117593 118093 501 Locate
ndhA gene − 118174 120266 2093 Locate
ndhH gene − 120268 121479 1212 Locate
rps15 gene − 121552 121884 333 Locate
ycf1 gene − 122091 127727 5637 Locate
trnN-GUU gene + 127946 128017 72 Locate
trnR-ACG gene − 128564 128637 74 Locate
rrn5 gene − 128872 128992 121 Locate
rrn4.5 gene − 129240 129342 103 Locate
rrn23 gene − 129441 132253 2813 Locate
trnA-UGC gene − 132423 133305 883 Locate
trnI-GAU gene − 133370 134390 1021 Locate
ycf68 gene − 133996 134235 240 Locate
rrn16 gene − 134689 136179 1491 Locate
trnV-GAC gene − 136407 136478 72 Locate
rps12 gene + 138048 138838 791 Locate
rps7 gene + 138892 139359 468 Locate
ndhB gene + 139634 141845 2212 Locate
trnL-CAA gene + 142388 142468 81 Locate
ycf15 gene − 142724 142972 249 Locate
ycf2 gene − 143063 149872 6810 Locate
trnI-CAU gene + 149961 150034 74 Locate
rpl23 gene + 150194 150475 282 Locate
rpl2 gene + 150494 151976 1483 Locate
Status Available
Accession PQ059348.1
Length 152,071 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources