Scutellaria tenera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059191.1 · 3–76 bp · −
psbA · PQ059191.1 · 365–1,423 bp · −
trnK-UUU · PQ059191.1 · 1,665–4,253 bp · −
matK · PQ059191.1 · 1,960–3,495 bp · −
rps16 · PQ059191.1 · 5,135–6,308 bp · −
trnQ-UUG · PQ059191.1 · 7,331–7,402 bp · −
trnS-GCU · PQ059191.1 · 8,533–8,620 bp · −
atpA · PQ059191.1 · 10,401–11,924 bp · −
atpF · PQ059191.1 · 12,007–13,234 bp · −
atpH · PQ059191.1 · 13,590–13,835 bp · −
atpI · PQ059191.1 · 14,831–15,574 bp · −
rps2 · PQ059191.1 · 15,923–16,759 bp · −
rpoC2 · PQ059191.1 · 16,850–21,055 bp · −
rpoC1 · PQ059191.1 · 21,210–24,038 bp · −
rpoB · PQ059191.1 · 24,065–27,277 bp · −
psbM · PQ059191.1 · 30,323–30,427 bp · −
trnD-GUC · PQ059191.1 · 30,954–31,027 bp · −
trnY-GUA · PQ059191.1 · 31,141–31,224 bp · −
trnE-UUC · PQ059191.1 · 31,284–31,356 bp · −
trnS-UGA · PQ059191.1 · 35,975–36,066 bp · −
trnfM-CAU · PQ059191.1 · 37,069–37,142 bp · −
rps14 · PQ059191.1 · 37,292–37,594 bp · −
psaB · PQ059191.1 · 37,722–39,926 bp · −
psaA · PQ059191.1 · 39,952–42,204 bp · −
ycf3 · PQ059191.1 · 42,874–44,800 bp · −
rps4 · PQ059191.1 · 46,057–46,662 bp · −
trnT-UGU · PQ059191.1 · 47,016–47,088 bp · −
ndhJ · PQ059191.1 · 49,363–49,839 bp · −
ndhK · PQ059191.1 · 49,947–50,624 bp · −
ndhC · PQ059191.1 · 50,677–51,039 bp · −
trnV-UAC · PQ059191.1 · 51,895–52,547 bp · −
atpE · PQ059191.1 · 53,016–53,417 bp · −
atpB · PQ059191.1 · 53,414–54,901 bp · −
psbJ · PQ059191.1 · 64,450–64,572 bp · −
psbL · PQ059191.1 · 64,706–64,927 bp · −
psbF · PQ059191.1 · 64,846–64,965 bp · −
psbE · PQ059191.1 · 64,980–65,231 bp · −
trnW-CCA · PQ059191.1 · 66,643–66,716 bp · −
trnP-UGG · PQ059191.1 · 66,886–66,959 bp · −
rpl20 · PQ059191.1 · 68,756–69,142 bp · −
rps12 · PQ059191.1 · 69,943–70,056 bp · −
rps12 · PQ059191.1 · 97,255–98,045 bp · −
clpP · PQ059191.1 · 70,199–72,132 bp · −
psbN · PQ059191.1 · 74,492–74,623 bp · −
rpoA · PQ059191.1 · 78,199–78,999 bp · −
rps11 · PQ059191.1 · 79,071–79,487 bp · −
rpl36 · PQ059191.1 · 79,589–79,702 bp · −
infA · PQ059191.1 · 79,798–80,031 bp · −
rps8 · PQ059191.1 · 80,151–80,561 bp · −
rpl14 · PQ059191.1 · 80,730–81,098 bp · −
rpl16 · PQ059191.1 · 81,225–82,458 bp · −
rps3 · PQ059191.1 · 82,613–83,275 bp · −
rpl22 · PQ059191.1 · 83,277–83,732 bp · −
rps19 · PQ059191.1 · 83,792–84,070 bp · −
rpl2 · PQ059191.1 · 84,125–85,607 bp · −
rpl23 · PQ059191.1 · 85,626–85,907 bp · −
trnI-CAU · PQ059191.1 · 86,067–86,140 bp · −
trnL-CAA · PQ059191.1 · 93,633–93,713 bp · −
ndhB · PQ059191.1 · 94,256–96,405 bp · −
rps7 · PQ059191.1 · 96,734–97,201 bp · −
trnN-GUU · PQ059191.1 · 108,085–108,156 bp · −
ndhF · PQ059191.1 · 109,233–111,473 bp · −
ndhD · PQ059191.1 · 113,999–115,501 bp · −
psaC · PQ059191.1 · 115,621–115,866 bp · −
ndhE · PQ059191.1 · 116,123–116,428 bp · −
ndhG · PQ059191.1 · 116,649–117,179 bp · −
ndhI · PQ059191.1 · 117,544–118,044 bp · −
ndhA · PQ059191.1 · 118,125–120,216 bp · −
ndhH · PQ059191.1 · 120,218–121,429 bp · −
rps15 · PQ059191.1 · 121,502–121,834 bp · −
ycf1 · PQ059191.1 · 122,041–127,686 bp · −
trnR-ACG · PQ059191.1 · 128,523–128,596 bp · −
rrn5 · PQ059191.1 · 128,831–128,951 bp · −
rrn4.5 · PQ059191.1 · 129,199–129,301 bp · −
rrn23 · PQ059191.1 · 129,400–132,212 bp · −
trnA-UGC · PQ059191.1 · 132,382–133,265 bp · −
trnI-GAU · PQ059191.1 · 133,330–134,350 bp · −
ycf68 · PQ059191.1 · 133,956–134,195 bp · −
rrn16 · PQ059191.1 · 134,649–136,139 bp · −
trnV-GAC · PQ059191.1 · 136,367–136,438 bp · −
ycf15 · PQ059191.1 · 142,684–142,881 bp · −
ycf2 · PQ059191.1 · 143,023–149,832 bp · −
psbK · PQ059191.1 · 7,727–7,912 bp · +
psbI · PQ059191.1 · 8,304–8,414 bp · +
trnG-UCC · PQ059191.1 · 9,302–10,062 bp · +
trnR-UCU · PQ059191.1 · 10,233–10,304 bp · +
trnC-GCA · PQ059191.1 · 28,446–28,516 bp · +
petN · PQ059191.1 · 29,228–29,317 bp · +
trnT-GGU · PQ059191.1 · 31,932–32,003 bp · +
psbD · PQ059191.1 · 33,309–34,370 bp · +
psbC · PQ059191.1 · 34,318–35,739 bp · +
psbZ · PQ059191.1 · 36,386–36,574 bp · +
trnG-GCC · PQ059191.1 · 36,846–36,916 bp · +
trnS-GGA · PQ059191.1 · 45,685–45,771 bp · +
trnL-UAA · PQ059191.1 · 47,775–48,336 bp · +
trnF-GAA · PQ059191.1 · 48,643–48,715 bp · +
trnM-CAU · PQ059191.1 · 52,728–52,800 bp · +
rbcL · PQ059191.1 · 55,651–57,114 bp · +
accD · PQ059191.1 · 57,848–59,314 bp · +
psaI · PQ059191.1 · 59,847–59,957 bp · +
ycf4 · PQ059191.1 · 60,391–60,945 bp · +
cemA · PQ059191.1 · 61,683–62,282 bp · +
petA · PQ059191.1 · 62,489–63,451 bp · +
petL · PQ059191.1 · 66,140–66,235 bp · +
petG · PQ059191.1 · 66,411–66,524 bp · +
psaJ · PQ059191.1 · 67,232–67,366 bp · +
rpl33 · PQ059191.1 · 67,840–68,040 bp · +
rps18 · PQ059191.1 · 68,215–68,520 bp · +
rps12 · PQ059191.1 · 138,016–138,806 bp · +
psbB · PQ059191.1 · 72,599–74,125 bp · +
psbT · PQ059191.1 · 74,317–74,418 bp · +
psbH · PQ059191.1 · 74,727–74,948 bp · +
petB · PQ059191.1 · 75,073–76,442 bp · +
petD · PQ059191.1 · 76,631–77,832 bp · +
ycf2 · PQ059191.1 · 86,229–93,038 bp · +
ycf15 · PQ059191.1 · 93,180–93,377 bp · +
trnV-GAC · PQ059191.1 · 99,623–99,694 bp · +
rrn16 · PQ059191.1 · 99,922–101,412 bp · +
trnI-GAU · PQ059191.1 · 101,711–102,731 bp · +
trnA-UGC · PQ059191.1 · 102,796–103,679 bp · +
rrn23 · PQ059191.1 · 103,849–106,661 bp · +
rrn4.5 · PQ059191.1 · 106,760–106,862 bp · +
rrn5 · PQ059191.1 · 107,110–107,230 bp · +
trnR-ACG · PQ059191.1 · 107,465–107,538 bp · +
rpl32 · PQ059191.1 · 111,994–112,170 bp · +
trnL-UAG · PQ059191.1 · 112,615–112,694 bp · +
ccsA · PQ059191.1 · 112,792–113,766 bp · +
trnN-GUU · PQ059191.1 · 127,905–127,976 bp · +
rps7 · PQ059191.1 · 138,860–139,327 bp · +
ndhB · PQ059191.1 · 139,656–141,805 bp · +
trnL-CAA · PQ059191.1 · 142,348–142,428 bp · +
trnI-CAU · PQ059191.1 · 149,921–149,994 bp · +
rpl23 · PQ059191.1 · 150,154–150,435 bp · +
rpl2 · PQ059191.1 · 150,454–151,936 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tenera
ANNOTATED PLASTOME
PQ059191.1
152,031 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38008 76016 114023 152031 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5135 6308 1174 Locate
trnQ-UUG gene − 7331 7402 72 Locate
psbK gene + 7727 7912 186 Locate
psbI gene + 8304 8414 111 Locate
trnS-GCU gene − 8533 8620 88 Locate
trnG-UCC gene + 9302 10062 761 Locate
trnR-UCU gene + 10233 10304 72 Locate
atpA gene − 10401 11924 1524 Locate
atpF gene − 12007 13234 1228 Locate
atpH gene − 13590 13835 246 Locate
atpI gene − 14831 15574 744 Locate
rps2 gene − 15923 16759 837 Locate
rpoC2 gene − 16850 21055 4206 Locate
rpoC1 gene − 21210 24038 2829 Locate
rpoB gene − 24065 27277 3213 Locate
trnC-GCA gene + 28446 28516 71 Locate
petN gene + 29228 29317 90 Locate
psbM gene − 30323 30427 105 Locate
trnD-GUC gene − 30954 31027 74 Locate
trnY-GUA gene − 31141 31224 84 Locate
trnE-UUC gene − 31284 31356 73 Locate
trnT-GGU gene + 31932 32003 72 Locate
psbD gene + 33309 34370 1062 Locate
psbC gene + 34318 35739 1422 Locate
trnS-UGA gene − 35975 36066 92 Locate
psbZ gene + 36386 36574 189 Locate
trnG-GCC gene + 36846 36916 71 Locate
trnfM-CAU gene − 37069 37142 74 Locate
rps14 gene − 37292 37594 303 Locate
psaB gene − 37722 39926 2205 Locate
psaA gene − 39952 42204 2253 Locate
ycf3 gene − 42874 44800 1927 Locate
trnS-GGA gene + 45685 45771 87 Locate
rps4 gene − 46057 46662 606 Locate
trnT-UGU gene − 47016 47088 73 Locate
trnL-UAA gene + 47775 48336 562 Locate
trnF-GAA gene + 48643 48715 73 Locate
ndhJ gene − 49363 49839 477 Locate
ndhK gene − 49947 50624 678 Locate
ndhC gene − 50677 51039 363 Locate
trnV-UAC gene − 51895 52547 653 Locate
trnM-CAU gene + 52728 52800 73 Locate
atpE gene − 53016 53417 402 Locate
atpB gene − 53414 54901 1488 Locate
rbcL gene + 55651 57114 1464 Locate
accD gene + 57848 59314 1467 Locate
psaI gene + 59847 59957 111 Locate
ycf4 gene + 60391 60945 555 Locate
cemA gene + 61683 62282 600 Locate
petA gene + 62489 63451 963 Locate
psbJ gene − 64450 64572 123 Locate
psbL gene − 64706 64927 222 Locate
psbF gene − 64846 64965 120 Locate
psbE gene − 64980 65231 252 Locate
petL gene + 66140 66235 96 Locate
petG gene + 66411 66524 114 Locate
trnW-CCA gene − 66643 66716 74 Locate
trnP-UGG gene − 66886 66959 74 Locate
psaJ gene + 67232 67366 135 Locate
rpl33 gene + 67840 68040 201 Locate
rps18 gene + 68215 68520 306 Locate
rpl20 gene − 68756 69142 387 Locate
rps12 gene − 69943 70056 114 Locate
clpP gene − 70199 72132 1934 Locate
psbB gene + 72599 74125 1527 Locate
psbT gene + 74317 74418 102 Locate
psbN gene − 74492 74623 132 Locate
psbH gene + 74727 74948 222 Locate
petB gene + 75073 76442 1370 Locate
petD gene + 76631 77832 1202 Locate
rpoA gene − 78199 78999 801 Locate
rps11 gene − 79071 79487 417 Locate
rpl36 gene − 79589 79702 114 Locate
infA gene − 79798 80031 234 Locate
rps8 gene − 80151 80561 411 Locate
rpl14 gene − 80730 81098 369 Locate
rpl16 gene − 81225 82458 1234 Locate
rps3 gene − 82613 83275 663 Locate
rpl22 gene − 83277 83732 456 Locate
rps19 gene − 83792 84070 279 Locate
rpl2 gene − 84125 85607 1483 Locate
rpl23 gene − 85626 85907 282 Locate
trnI-CAU gene − 86067 86140 74 Locate
ycf2 gene + 86229 93038 6810 Locate
ycf15 gene + 93180 93377 198 Locate
trnL-CAA gene − 93633 93713 81 Locate
ndhB gene − 94256 96405 2150 Locate
rps7 gene − 96734 97201 468 Locate
rps12 gene − 97255 98045 791 Locate
trnV-GAC gene + 99623 99694 72 Locate
rrn16 gene + 99922 101412 1491 Locate
trnI-GAU gene + 101711 102731 1021 Locate
trnA-UGC gene + 102796 103679 884 Locate
rrn23 gene + 103849 106661 2813 Locate
rrn4.5 gene + 106760 106862 103 Locate
rrn5 gene + 107110 107230 121 Locate
trnR-ACG gene + 107465 107538 74 Locate
trnN-GUU gene − 108085 108156 72 Locate
ndhF gene − 109233 111473 2241 Locate
rpl32 gene + 111994 112170 177 Locate
trnL-UAG gene + 112615 112694 80 Locate
ccsA gene + 112792 113766 975 Locate
ndhD gene − 113999 115501 1503 Locate
psaC gene − 115621 115866 246 Locate
ndhE gene − 116123 116428 306 Locate
ndhG gene − 116649 117179 531 Locate
ndhI gene − 117544 118044 501 Locate
ndhA gene − 118125 120216 2092 Locate
ndhH gene − 120218 121429 1212 Locate
rps15 gene − 121502 121834 333 Locate
ycf1 gene − 122041 127686 5646 Locate
trnN-GUU gene + 127905 127976 72 Locate
trnR-ACG gene − 128523 128596 74 Locate
rrn5 gene − 128831 128951 121 Locate
rrn4.5 gene − 129199 129301 103 Locate
rrn23 gene − 129400 132212 2813 Locate
trnA-UGC gene − 132382 133265 884 Locate
trnI-GAU gene − 133330 134350 1021 Locate
ycf68 gene − 133956 134195 240 Locate
rrn16 gene − 134649 136139 1491 Locate
trnV-GAC gene − 136367 136438 72 Locate
rps12 gene + 138016 138806 791 Locate
rps7 gene + 138860 139327 468 Locate
ndhB gene + 139656 141805 2150 Locate
trnL-CAA gene + 142348 142428 81 Locate
ycf15 gene − 142684 142881 198 Locate
ycf2 gene − 143023 149832 6810 Locate
trnI-CAU gene + 149921 149994 74 Locate
rpl23 gene + 150154 150435 282 Locate
rpl2 gene + 150454 151936 1483 Locate
Status Available
Accession PQ059191.1
Length 152,031 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources