Scutellaria theobromina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059239.1 · 4–77 bp · −
psbA · PQ059239.1 · 374–1,432 bp · −
trnK-UUU · PQ059239.1 · 1,674–4,255 bp · −
matK · PQ059239.1 · 1,964–3,490 bp · −
rps16 · PQ059239.1 · 5,158–6,318 bp · −
trnQ-UUG · PQ059239.1 · 7,053–7,124 bp · −
trnS-GCU · PQ059239.1 · 8,255–8,342 bp · −
atpA · PQ059239.1 · 10,142–11,665 bp · −
atpF · PQ059239.1 · 11,747–12,976 bp · −
atpH · PQ059239.1 · 13,332–13,577 bp · −
atpI · PQ059239.1 · 14,565–15,308 bp · −
rps2 · PQ059239.1 · 15,654–16,364 bp · −
rpoC2 · PQ059239.1 · 16,580–20,785 bp · −
rpoC1 · PQ059239.1 · 20,940–23,776 bp · −
rpoB · PQ059239.1 · 23,803–27,015 bp · −
psbM · PQ059239.1 · 30,095–30,199 bp · −
trnD-GUC · PQ059239.1 · 30,724–30,797 bp · −
trnY-GUA · PQ059239.1 · 30,911–30,994 bp · −
trnE-UUC · PQ059239.1 · 31,054–31,126 bp · −
trnS-UGA · PQ059239.1 · 35,745–35,836 bp · −
trnfM-CAU · PQ059239.1 · 36,832–36,905 bp · −
rps14 · PQ059239.1 · 37,060–37,362 bp · −
psaB · PQ059239.1 · 37,491–39,695 bp · −
psaA · PQ059239.1 · 39,721–41,973 bp · −
ycf3 · PQ059239.1 · 42,678–44,602 bp · −
rps4 · PQ059239.1 · 45,847–46,452 bp · −
trnT-UGU · PQ059239.1 · 46,794–46,866 bp · −
ndhJ · PQ059239.1 · 49,128–49,604 bp · −
ndhK · PQ059239.1 · 49,713–50,474 bp · −
ndhC · PQ059239.1 · 50,444–50,806 bp · −
trnV-UAC · PQ059239.1 · 51,792–52,444 bp · −
atpE · PQ059239.1 · 52,899–53,300 bp · −
atpB · PQ059239.1 · 53,297–54,793 bp · −
psbJ · PQ059239.1 · 64,529–64,651 bp · −
psbL · PQ059239.1 · 64,785–65,006 bp · −
psbF · PQ059239.1 · 64,925–65,044 bp · −
psbE · PQ059239.1 · 65,059–65,310 bp · −
trnW-CCA · PQ059239.1 · 66,691–66,764 bp · −
trnP-UGG · PQ059239.1 · 66,934–67,007 bp · −
rpl20 · PQ059239.1 · 68,812–69,198 bp · −
rps12 · PQ059239.1 · 69,993–70,106 bp · −
rps12 · PQ059239.1 · 97,254–98,044 bp · −
clpP · PQ059239.1 · 70,248–72,176 bp · −
psbN · PQ059239.1 · 74,514–74,645 bp · −
rpoA · PQ059239.1 · 78,208–79,008 bp · −
rps11 · PQ059239.1 · 79,080–79,496 bp · −
rpl36 · PQ059239.1 · 79,598–79,711 bp · −
infA · PQ059239.1 · 79,806–80,039 bp · −
rps8 · PQ059239.1 · 80,163–80,573 bp · −
rpl14 · PQ059239.1 · 80,726–81,094 bp · −
rpl16 · PQ059239.1 · 81,221–82,454 bp · −
rps3 · PQ059239.1 · 82,610–83,272 bp · −
rpl22 · PQ059239.1 · 83,274–83,729 bp · −
rps19 · PQ059239.1 · 83,789–84,067 bp · −
rpl2 · PQ059239.1 · 84,122–85,603 bp · −
rpl23 · PQ059239.1 · 85,622–85,903 bp · −
trnI-CAU · PQ059239.1 · 86,063–86,136 bp · −
trnL-CAA · PQ059239.1 · 93,624–93,704 bp · −
ndhB · PQ059239.1 · 94,247–96,404 bp · −
rps7 · PQ059239.1 · 96,733–97,200 bp · −
trnN-GUU · PQ059239.1 · 108,073–108,144 bp · −
ndhF · PQ059239.1 · 109,201–111,462 bp · −
ndhD · PQ059239.1 · 113,825–115,354 bp · −
psaC · PQ059239.1 · 115,455–115,700 bp · −
ndhE · PQ059239.1 · 115,956–116,261 bp · −
ndhG · PQ059239.1 · 116,478–117,008 bp · −
ndhI · PQ059239.1 · 117,375–117,875 bp · −
ndhA · PQ059239.1 · 117,961–120,082 bp · −
ndhH · PQ059239.1 · 120,084–121,295 bp · −
rps15 · PQ059239.1 · 121,362–121,634 bp · −
ycf1 · PQ059239.1 · 121,832–127,468 bp · −
trnR-ACG · PQ059239.1 · 128,307–128,380 bp · −
rrn5 · PQ059239.1 · 128,615–128,735 bp · −
rrn4.5 · PQ059239.1 · 128,983–129,085 bp · −
rrn23 · PQ059239.1 · 129,184–131,995 bp · −
trnA-UGC · PQ059239.1 · 132,158–133,043 bp · −
trnI-GAU · PQ059239.1 · 133,108–134,128 bp · −
ycf68 · PQ059239.1 · 133,680–133,973 bp · −
rrn16 · PQ059239.1 · 134,427–135,917 bp · −
trnV-GAC · PQ059239.1 · 136,144–136,215 bp · −
ycf15 · PQ059239.1 · 142,467–142,664 bp · −
ycf2 · PQ059239.1 · 142,806–149,606 bp · −
psbK · PQ059239.1 · 7,449–7,634 bp · +
psbI · PQ059239.1 · 8,025–8,135 bp · +
trnG-UCC · PQ059239.1 · 9,043–9,799 bp · +
trnR-UCU · PQ059239.1 · 9,974–10,045 bp · +
trnC-GCA · PQ059239.1 · 28,176–28,246 bp · +
petN · PQ059239.1 · 28,963–29,052 bp · +
trnT-GGU · PQ059239.1 · 31,702–31,773 bp · +
psbD · PQ059239.1 · 33,079–34,140 bp · +
psbC · PQ059239.1 · 34,088–35,509 bp · +
psbZ · PQ059239.1 · 36,152–36,340 bp · +
trnG-GCC · PQ059239.1 · 36,617–36,687 bp · +
trnS-GGA · PQ059239.1 · 45,485–45,571 bp · +
trnL-UAA · PQ059239.1 · 47,547–48,106 bp · +
trnF-GAA · PQ059239.1 · 48,408–48,480 bp · +
trnM-CAU · PQ059239.1 · 52,633–52,705 bp · +
rbcL · PQ059239.1 · 55,544–57,007 bp · +
accD · PQ059239.1 · 57,722–59,200 bp · +
psaI · PQ059239.1 · 59,906–60,016 bp · +
ycf4 · PQ059239.1 · 60,450–61,004 bp · +
cemA · PQ059239.1 · 61,752–62,351 bp · +
petA · PQ059239.1 · 62,558–63,520 bp · +
petL · PQ059239.1 · 66,188–66,283 bp · +
petG · PQ059239.1 · 66,459–66,572 bp · +
psaJ · PQ059239.1 · 67,216–67,413 bp · +
rpl33 · PQ059239.1 · 67,897–68,097 bp · +
rps18 · PQ059239.1 · 68,272–68,577 bp · +
rps12 · PQ059239.1 · 137,787–138,577 bp · +
psbB · PQ059239.1 · 72,628–74,154 bp · +
psbT · PQ059239.1 · 74,346–74,453 bp · +
psbH · PQ059239.1 · 74,749–74,970 bp · +
petB · PQ059239.1 · 75,095–76,464 bp · +
petD · PQ059239.1 · 76,647–77,853 bp · +
ycf2 · PQ059239.1 · 86,225–93,025 bp · +
ycf15 · PQ059239.1 · 93,167–93,364 bp · +
trnV-GAC · PQ059239.1 · 99,616–99,687 bp · +
rrn16 · PQ059239.1 · 99,914–101,404 bp · +
trnI-GAU · PQ059239.1 · 101,703–102,723 bp · +
trnA-UGC · PQ059239.1 · 102,788–103,673 bp · +
rrn23 · PQ059239.1 · 103,836–106,647 bp · +
rrn4.5 · PQ059239.1 · 106,746–106,848 bp · +
rrn5 · PQ059239.1 · 107,096–107,216 bp · +
trnR-ACG · PQ059239.1 · 107,451–107,524 bp · +
rpl32 · PQ059239.1 · 111,790–111,966 bp · +
trnL-UAG · PQ059239.1 · 112,413–112,492 bp · +
ccsA · PQ059239.1 · 112,594–113,568 bp · +
trnN-GUU · PQ059239.1 · 127,687–127,758 bp · +
rps7 · PQ059239.1 · 138,631–139,098 bp · +
ndhB · PQ059239.1 · 139,427–141,584 bp · +
trnL-CAA · PQ059239.1 · 142,127–142,207 bp · +
trnI-CAU · PQ059239.1 · 149,695–149,768 bp · +
rpl23 · PQ059239.1 · 149,928–150,209 bp · +
rpl2 · PQ059239.1 · 150,228–151,709 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria theobromina
ANNOTATED PLASTOME
PQ059239.1
151,809 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37952 75904 113857 151809 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5158 6318 1161 Locate
trnQ-UUG gene − 7053 7124 72 Locate
psbK gene + 7449 7634 186 Locate
psbI gene + 8025 8135 111 Locate
trnS-GCU gene − 8255 8342 88 Locate
trnG-UCC gene + 9043 9799 757 Locate
trnR-UCU gene + 9974 10045 72 Locate
atpA gene − 10142 11665 1524 Locate
atpF gene − 11747 12976 1230 Locate
atpH gene − 13332 13577 246 Locate
atpI gene − 14565 15308 744 Locate
rps2 gene − 15654 16364 711 Locate
rpoC2 gene − 16580 20785 4206 Locate
rpoC1 gene − 20940 23776 2837 Locate
rpoB gene − 23803 27015 3213 Locate
trnC-GCA gene + 28176 28246 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30095 30199 105 Locate
trnD-GUC gene − 30724 30797 74 Locate
trnY-GUA gene − 30911 30994 84 Locate
trnE-UUC gene − 31054 31126 73 Locate
trnT-GGU gene + 31702 31773 72 Locate
psbD gene + 33079 34140 1062 Locate
psbC gene + 34088 35509 1422 Locate
trnS-UGA gene − 35745 35836 92 Locate
psbZ gene + 36152 36340 189 Locate
trnG-GCC gene + 36617 36687 71 Locate
trnfM-CAU gene − 36832 36905 74 Locate
rps14 gene − 37060 37362 303 Locate
psaB gene − 37491 39695 2205 Locate
psaA gene − 39721 41973 2253 Locate
ycf3 gene − 42678 44602 1925 Locate
trnS-GGA gene + 45485 45571 87 Locate
rps4 gene − 45847 46452 606 Locate
trnT-UGU gene − 46794 46866 73 Locate
trnL-UAA gene + 47547 48106 560 Locate
trnF-GAA gene + 48408 48480 73 Locate
ndhJ gene − 49128 49604 477 Locate
ndhK gene − 49713 50474 762 Locate
ndhC gene − 50444 50806 363 Locate
trnV-UAC gene − 51792 52444 653 Locate
trnM-CAU gene + 52633 52705 73 Locate
atpE gene − 52899 53300 402 Locate
atpB gene − 53297 54793 1497 Locate
rbcL gene + 55544 57007 1464 Locate
accD gene + 57722 59200 1479 Locate
psaI gene + 59906 60016 111 Locate
ycf4 gene + 60450 61004 555 Locate
cemA gene + 61752 62351 600 Locate
petA gene + 62558 63520 963 Locate
psbJ gene − 64529 64651 123 Locate
psbL gene − 64785 65006 222 Locate
psbF gene − 64925 65044 120 Locate
psbE gene − 65059 65310 252 Locate
petL gene + 66188 66283 96 Locate
petG gene + 66459 66572 114 Locate
trnW-CCA gene − 66691 66764 74 Locate
trnP-UGG gene − 66934 67007 74 Locate
psaJ gene + 67216 67413 198 Locate
rpl33 gene + 67897 68097 201 Locate
rps18 gene + 68272 68577 306 Locate
rpl20 gene − 68812 69198 387 Locate
rps12 gene − 69993 70106 114 Locate
clpP gene − 70248 72176 1929 Locate
psbB gene + 72628 74154 1527 Locate
psbT gene + 74346 74453 108 Locate
psbN gene − 74514 74645 132 Locate
psbH gene + 74749 74970 222 Locate
petB gene + 75095 76464 1370 Locate
petD gene + 76647 77853 1207 Locate
rpoA gene − 78208 79008 801 Locate
rps11 gene − 79080 79496 417 Locate
rpl36 gene − 79598 79711 114 Locate
infA gene − 79806 80039 234 Locate
rps8 gene − 80163 80573 411 Locate
rpl14 gene − 80726 81094 369 Locate
rpl16 gene − 81221 82454 1234 Locate
rps3 gene − 82610 83272 663 Locate
rpl22 gene − 83274 83729 456 Locate
rps19 gene − 83789 84067 279 Locate
rpl2 gene − 84122 85603 1482 Locate
rpl23 gene − 85622 85903 282 Locate
trnI-CAU gene − 86063 86136 74 Locate
ycf2 gene + 86225 93025 6801 Locate
ycf15 gene + 93167 93364 198 Locate
trnL-CAA gene − 93624 93704 81 Locate
ndhB gene − 94247 96404 2158 Locate
rps7 gene − 96733 97200 468 Locate
rps12 gene − 97254 98044 791 Locate
trnV-GAC gene + 99616 99687 72 Locate
rrn16 gene + 99914 101404 1491 Locate
trnI-GAU gene + 101703 102723 1021 Locate
trnA-UGC gene + 102788 103673 886 Locate
rrn23 gene + 103836 106647 2812 Locate
rrn4.5 gene + 106746 106848 103 Locate
rrn5 gene + 107096 107216 121 Locate
trnR-ACG gene + 107451 107524 74 Locate
trnN-GUU gene − 108073 108144 72 Locate
ndhF gene − 109201 111462 2262 Locate
rpl32 gene + 111790 111966 177 Locate
trnL-UAG gene + 112413 112492 80 Locate
ccsA gene + 112594 113568 975 Locate
ndhD gene − 113825 115354 1530 Locate
psaC gene − 115455 115700 246 Locate
ndhE gene − 115956 116261 306 Locate
ndhG gene − 116478 117008 531 Locate
ndhI gene − 117375 117875 501 Locate
ndhA gene − 117961 120082 2122 Locate
ndhH gene − 120084 121295 1212 Locate
rps15 gene − 121362 121634 273 Locate
ycf1 gene − 121832 127468 5637 Locate
trnN-GUU gene + 127687 127758 72 Locate
trnR-ACG gene − 128307 128380 74 Locate
rrn5 gene − 128615 128735 121 Locate
rrn4.5 gene − 128983 129085 103 Locate
rrn23 gene − 129184 131995 2812 Locate
trnA-UGC gene − 132158 133043 886 Locate
trnI-GAU gene − 133108 134128 1021 Locate
ycf68 gene − 133680 133973 294 Locate
rrn16 gene − 134427 135917 1491 Locate
trnV-GAC gene − 136144 136215 72 Locate
rps12 gene + 137787 138577 791 Locate
rps7 gene + 138631 139098 468 Locate
ndhB gene + 139427 141584 2158 Locate
trnL-CAA gene + 142127 142207 81 Locate
ycf15 gene − 142467 142664 198 Locate
ycf2 gene − 142806 149606 6801 Locate
trnI-CAU gene + 149695 149768 74 Locate
rpl23 gene + 149928 150209 282 Locate
rpl2 gene + 150228 151709 1482 Locate
Status Available
Accession PQ059239.1
Length 151,809 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources