Scutellaria tienchuanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059351.1 · 3–76 bp · −
psbA · PQ059351.1 · 369–1,427 bp · −
trnK-UUU · PQ059351.1 · 1,670–4,258 bp · −
matK · PQ059351.1 · 1,965–3,500 bp · −
rps16 · PQ059351.1 · 5,123–6,291 bp · −
trnQ-UUG · PQ059351.1 · 7,409–7,480 bp · −
trnS-GCU · PQ059351.1 · 8,611–8,698 bp · −
atpA · PQ059351.1 · 10,478–12,001 bp · −
atpF · PQ059351.1 · 12,084–13,313 bp · −
atpH · PQ059351.1 · 13,679–13,924 bp · −
atpI · PQ059351.1 · 14,912–15,655 bp · −
rps2 · PQ059351.1 · 16,004–16,840 bp · −
rpoC2 · PQ059351.1 · 16,931–21,136 bp · −
rpoC1 · PQ059351.1 · 21,291–24,130 bp · −
rpoB · PQ059351.1 · 24,157–27,369 bp · −
psbM · PQ059351.1 · 30,435–30,539 bp · −
trnD-GUC · PQ059351.1 · 31,066–31,139 bp · −
trnY-GUA · PQ059351.1 · 31,253–31,336 bp · −
trnE-UUC · PQ059351.1 · 31,396–31,468 bp · −
trnS-UGA · PQ059351.1 · 36,091–36,182 bp · −
trnfM-CAU · PQ059351.1 · 37,185–37,258 bp · −
rps14 · PQ059351.1 · 37,408–37,710 bp · −
psaB · PQ059351.1 · 37,838–40,042 bp · −
psaA · PQ059351.1 · 40,068–42,320 bp · −
ycf3 · PQ059351.1 · 42,992–44,913 bp · −
rps4 · PQ059351.1 · 46,184–46,789 bp · −
trnT-UGU · PQ059351.1 · 47,133–47,205 bp · −
ndhJ · PQ059351.1 · 49,479–49,955 bp · −
ndhK · PQ059351.1 · 50,063–50,740 bp · −
ndhC · PQ059351.1 · 50,793–51,155 bp · −
trnV-UAC · PQ059351.1 · 52,144–52,796 bp · −
atpE · PQ059351.1 · 53,259–53,660 bp · −
atpB · PQ059351.1 · 53,657–55,144 bp · −
psbJ · PQ059351.1 · 64,890–65,012 bp · −
psbL · PQ059351.1 · 65,146–65,262 bp · −
psbF · PQ059351.1 · 65,286–65,405 bp · −
psbE · PQ059351.1 · 65,420–65,671 bp · −
trnW-CCA · PQ059351.1 · 67,083–67,156 bp · −
trnP-UGG · PQ059351.1 · 67,327–67,400 bp · −
rpl20 · PQ059351.1 · 69,197–69,583 bp · −
rps12 · PQ059351.1 · 70,384–70,497 bp · −
rps12 · PQ059351.1 · 97,721–98,511 bp · −
clpP · PQ059351.1 · 70,640–72,573 bp · −
psbN · PQ059351.1 · 74,933–75,064 bp · −
rpoA · PQ059351.1 · 78,439–79,446 bp · −
rps11 · PQ059351.1 · 79,518–79,934 bp · −
rpl36 · PQ059351.1 · 80,036–80,149 bp · −
infA · PQ059351.1 · 80,245–80,478 bp · −
rps8 · PQ059351.1 · 80,598–81,008 bp · −
rpl14 · PQ059351.1 · 81,178–81,546 bp · −
rpl16 · PQ059351.1 · 81,673–82,916 bp · −
rps3 · PQ059351.1 · 83,071–83,733 bp · −
rpl22 · PQ059351.1 · 83,735–84,190 bp · −
rps19 · PQ059351.1 · 84,250–84,528 bp · −
rpl2 · PQ059351.1 · 84,583–86,065 bp · −
rpl23 · PQ059351.1 · 86,084–86,365 bp · −
trnI-CAU · PQ059351.1 · 86,525–86,598 bp · −
trnL-CAA · PQ059351.1 · 94,091–94,171 bp · −
ndhB · PQ059351.1 · 94,714–96,871 bp · −
rps7 · PQ059351.1 · 97,200–97,667 bp · −
trnN-GUU · PQ059351.1 · 108,548–108,619 bp · −
ndhF · PQ059351.1 · 109,696–111,936 bp · −
ndhD · PQ059351.1 · 114,449–115,951 bp · −
psaC · PQ059351.1 · 116,071–116,316 bp · −
ndhE · PQ059351.1 · 116,573–116,878 bp · −
ndhG · PQ059351.1 · 117,109–117,639 bp · −
ndhI · PQ059351.1 · 118,005–118,505 bp · −
ndhA · PQ059351.1 · 118,586–120,680 bp · −
ndhH · PQ059351.1 · 120,682–121,863 bp · −
rps15 · PQ059351.1 · 121,967–122,239 bp · −
ycf1 · PQ059351.1 · 122,505–128,144 bp · −
trnR-ACG · PQ059351.1 · 128,981–129,054 bp · −
rrn5 · PQ059351.1 · 129,289–129,409 bp · −
rrn4.5 · PQ059351.1 · 129,657–129,759 bp · −
rrn23 · PQ059351.1 · 129,858–132,670 bp · −
trnI-GAU · PQ059351.1 · 133,787–134,807 bp · −
ycf68 · PQ059351.1 · 134,413–134,652 bp · −
rrn16 · PQ059351.1 · 135,106–136,596 bp · −
trnV-GAC · PQ059351.1 · 136,824–136,895 bp · −
ycf15 · PQ059351.1 · 143,149–143,397 bp · −
ycf2 · PQ059351.1 · 143,488–150,297 bp · −
psbK · PQ059351.1 · 7,805–7,990 bp · +
psbI · PQ059351.1 · 8,382–8,492 bp · +
trnG-UCC · PQ059351.1 · 9,375–10,135 bp · +
trnR-UCU · PQ059351.1 · 10,310–10,381 bp · +
trnC-GCA · PQ059351.1 · 28,538–28,608 bp · +
petN · PQ059351.1 · 29,327–29,416 bp · +
trnT-GGU · PQ059351.1 · 32,044–32,115 bp · +
psbD · PQ059351.1 · 33,426–34,487 bp · +
psbC · PQ059351.1 · 34,435–35,856 bp · +
psbZ · PQ059351.1 · 36,502–36,690 bp · +
trnG-GCC · PQ059351.1 · 36,962–37,032 bp · +
trnS-GGA · PQ059351.1 · 45,812–45,898 bp · +
trnL-UAA · PQ059351.1 · 47,890–48,451 bp · +
trnF-GAA · PQ059351.1 · 48,758–48,830 bp · +
trnM-CAU · PQ059351.1 · 52,977–53,049 bp · +
rbcL · PQ059351.1 · 55,887–57,350 bp · +
accD · PQ059351.1 · 58,070–59,536 bp · +
psaI · PQ059351.1 · 60,253–60,363 bp · +
ycf4 · PQ059351.1 · 60,797–61,351 bp · +
cemA · PQ059351.1 · 62,089–62,688 bp · +
petA · PQ059351.1 · 62,895–63,857 bp · +
petL · PQ059351.1 · 66,580–66,675 bp · +
petG · PQ059351.1 · 66,851–66,964 bp · +
psaJ · PQ059351.1 · 67,673–67,807 bp · +
rpl33 · PQ059351.1 · 68,280–68,480 bp · +
rps18 · PQ059351.1 · 68,655–68,960 bp · +
rps12 · PQ059351.1 · 138,473–139,263 bp · +
psbB · PQ059351.1 · 73,040–74,566 bp · +
psbT · PQ059351.1 · 74,758–74,859 bp · +
psbH · PQ059351.1 · 75,168–75,389 bp · +
petB · PQ059351.1 · 75,514–76,883 bp · +
petD · PQ059351.1 · 77,072–78,276 bp · +
ycf2 · PQ059351.1 · 86,687–93,496 bp · +
ycf15 · PQ059351.1 · 93,587–93,835 bp · +
trnV-GAC · PQ059351.1 · 100,089–100,160 bp · +
rrn16 · PQ059351.1 · 100,388–101,878 bp · +
trnI-GAU · PQ059351.1 · 102,177–103,197 bp · +
trnA-UGC · PQ059351.1 · 103,262–104,142 bp · +
rrn23 · PQ059351.1 · 104,312–107,124 bp · +
rrn4.5 · PQ059351.1 · 107,223–107,325 bp · +
rrn5 · PQ059351.1 · 107,573–107,693 bp · +
trnR-ACG · PQ059351.1 · 107,928–108,001 bp · +
rpl32 · PQ059351.1 · 112,457–112,633 bp · +
trnL-UAG · PQ059351.1 · 113,079–113,158 bp · +
ccsA · PQ059351.1 · 113,242–114,216 bp · +
trnN-GUU · PQ059351.1 · 128,363–128,434 bp · +
rps7 · PQ059351.1 · 139,317–139,784 bp · +
ndhB · PQ059351.1 · 140,113–142,270 bp · +
trnL-CAA · PQ059351.1 · 142,813–142,893 bp · +
trnI-CAU · PQ059351.1 · 150,386–150,459 bp · +
rpl23 · PQ059351.1 · 150,619–150,900 bp · +
rpl2 · PQ059351.1 · 150,919–152,401 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tienchuanensis
ANNOTATED PLASTOME
PQ059351.1
152,496 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38124 76248 114372 152496 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1670 4258 2589 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5123 6291 1169 Locate
trnQ-UUG gene − 7409 7480 72 Locate
psbK gene + 7805 7990 186 Locate
psbI gene + 8382 8492 111 Locate
trnS-GCU gene − 8611 8698 88 Locate
trnG-UCC gene + 9375 10135 761 Locate
trnR-UCU gene + 10310 10381 72 Locate
atpA gene − 10478 12001 1524 Locate
atpF gene − 12084 13313 1230 Locate
atpH gene − 13679 13924 246 Locate
atpI gene − 14912 15655 744 Locate
rps2 gene − 16004 16840 837 Locate
rpoC2 gene − 16931 21136 4206 Locate
rpoC1 gene − 21291 24130 2840 Locate
rpoB gene − 24157 27369 3213 Locate
trnC-GCA gene + 28538 28608 71 Locate
petN gene + 29327 29416 90 Locate
psbM gene − 30435 30539 105 Locate
trnD-GUC gene − 31066 31139 74 Locate
trnY-GUA gene − 31253 31336 84 Locate
trnE-UUC gene − 31396 31468 73 Locate
trnT-GGU gene + 32044 32115 72 Locate
psbD gene + 33426 34487 1062 Locate
psbC gene + 34435 35856 1422 Locate
trnS-UGA gene − 36091 36182 92 Locate
psbZ gene + 36502 36690 189 Locate
trnG-GCC gene + 36962 37032 71 Locate
trnfM-CAU gene − 37185 37258 74 Locate
rps14 gene − 37408 37710 303 Locate
psaB gene − 37838 40042 2205 Locate
psaA gene − 40068 42320 2253 Locate
ycf3 gene − 42992 44913 1922 Locate
trnS-GGA gene + 45812 45898 87 Locate
rps4 gene − 46184 46789 606 Locate
trnT-UGU gene − 47133 47205 73 Locate
trnL-UAA gene + 47890 48451 562 Locate
trnF-GAA gene + 48758 48830 73 Locate
ndhJ gene − 49479 49955 477 Locate
ndhK gene − 50063 50740 678 Locate
ndhC gene − 50793 51155 363 Locate
trnV-UAC gene − 52144 52796 653 Locate
trnM-CAU gene + 52977 53049 73 Locate
atpE gene − 53259 53660 402 Locate
atpB gene − 53657 55144 1488 Locate
rbcL gene + 55887 57350 1464 Locate
accD gene + 58070 59536 1467 Locate
psaI gene + 60253 60363 111 Locate
ycf4 gene + 60797 61351 555 Locate
cemA gene + 62089 62688 600 Locate
petA gene + 62895 63857 963 Locate
psbJ gene − 64890 65012 123 Locate
psbL gene − 65146 65262 117 Locate
psbF gene − 65286 65405 120 Locate
psbE gene − 65420 65671 252 Locate
petL gene + 66580 66675 96 Locate
petG gene + 66851 66964 114 Locate
trnW-CCA gene − 67083 67156 74 Locate
trnP-UGG gene − 67327 67400 74 Locate
psaJ gene + 67673 67807 135 Locate
rpl33 gene + 68280 68480 201 Locate
rps18 gene + 68655 68960 306 Locate
rpl20 gene − 69197 69583 387 Locate
rps12 gene − 70384 70497 114 Locate
clpP gene − 70640 72573 1934 Locate
psbB gene + 73040 74566 1527 Locate
psbT gene + 74758 74859 102 Locate
psbN gene − 74933 75064 132 Locate
psbH gene + 75168 75389 222 Locate
petB gene + 75514 76883 1370 Locate
petD gene + 77072 78276 1205 Locate
rpoA gene − 78439 79446 1008 Locate
rps11 gene − 79518 79934 417 Locate
rpl36 gene − 80036 80149 114 Locate
infA gene − 80245 80478 234 Locate
rps8 gene − 80598 81008 411 Locate
rpl14 gene − 81178 81546 369 Locate
rpl16 gene − 81673 82916 1244 Locate
rps3 gene − 83071 83733 663 Locate
rpl22 gene − 83735 84190 456 Locate
rps19 gene − 84250 84528 279 Locate
rpl2 gene − 84583 86065 1483 Locate
rpl23 gene − 86084 86365 282 Locate
trnI-CAU gene − 86525 86598 74 Locate
ycf2 gene + 86687 93496 6810 Locate
ycf15 gene + 93587 93835 249 Locate
trnL-CAA gene − 94091 94171 81 Locate
ndhB gene − 94714 96871 2158 Locate
rps7 gene − 97200 97667 468 Locate
rps12 gene − 97721 98511 791 Locate
trnV-GAC gene + 100089 100160 72 Locate
rrn16 gene + 100388 101878 1491 Locate
trnI-GAU gene + 102177 103197 1021 Locate
trnA-UGC gene + 103262 104142 881 Locate
rrn23 gene + 104312 107124 2813 Locate
rrn4.5 gene + 107223 107325 103 Locate
rrn5 gene + 107573 107693 121 Locate
trnR-ACG gene + 107928 108001 74 Locate
trnN-GUU gene − 108548 108619 72 Locate
ndhF gene − 109696 111936 2241 Locate
rpl32 gene + 112457 112633 177 Locate
trnL-UAG gene + 113079 113158 80 Locate
ccsA gene + 113242 114216 975 Locate
ndhD gene − 114449 115951 1503 Locate
psaC gene − 116071 116316 246 Locate
ndhE gene − 116573 116878 306 Locate
ndhG gene − 117109 117639 531 Locate
ndhI gene − 118005 118505 501 Locate
ndhA gene − 118586 120680 2095 Locate
ndhH gene − 120682 121863 1182 Locate
rps15 gene − 121967 122239 273 Locate
ycf1 gene − 122505 128144 5640 Locate
trnN-GUU gene + 128363 128434 72 Locate
trnR-ACG gene − 128981 129054 74 Locate
rrn5 gene − 129289 129409 121 Locate
rrn4.5 gene − 129657 129759 103 Locate
rrn23 gene − 129858 132670 2813 Locate
trnI-GAU gene − 133787 134807 1021 Locate
ycf68 gene − 134413 134652 240 Locate
rrn16 gene − 135106 136596 1491 Locate
trnV-GAC gene − 136824 136895 72 Locate
rps12 gene + 138473 139263 791 Locate
rps7 gene + 139317 139784 468 Locate
ndhB gene + 140113 142270 2158 Locate
trnL-CAA gene + 142813 142893 81 Locate
ycf15 gene − 143149 143397 249 Locate
ycf2 gene − 143488 150297 6810 Locate
trnI-CAU gene + 150386 150459 74 Locate
rpl23 gene + 150619 150900 282 Locate
rpl2 gene + 150919 152401 1483 Locate
Status Available
Accession PQ059351.1
Length 152,496 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources