Scutellaria tomentosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420943.1 · 4–77 bp · −
psbA · MW420943.1 · 374–1,432 bp · −
trnK-UUU · MW420943.1 · 1,678–4,251 bp · −
matK · MW420943.1 · 1,964–3,490 bp · −
rps16 · MW420943.1 · 5,158–6,315 bp · −
trnQ-UUC · MW420943.1 · 7,056–7,127 bp · −
trnS-GCU · MW420943.1 · 8,256–8,343 bp · −
atpA · MW420943.1 · 10,145–11,668 bp · −
atpF · MW420943.1 · 11,750–12,979 bp · −
atpH · MW420943.1 · 13,340–13,585 bp · −
atpI · MW420943.1 · 14,573–15,316 bp · −
rps2 · MW420943.1 · 15,662–16,372 bp · −
rpoC2 · MW420943.1 · 16,588–20,793 bp · −
rpoC1 · MW420943.1 · 20,948–23,777 bp · −
rpoB · MW420943.1 · 23,804–27,016 bp · −
psbM · MW420943.1 · 30,061–30,165 bp · −
trnD-GUC · MW420943.1 · 30,691–30,764 bp · −
trnY-GUA · MW420943.1 · 30,879–30,962 bp · −
trnE-UUC · MW420943.1 · 31,022–31,094 bp · −
trnS-UCA · MW420943.1 · 35,712–35,804 bp · −
trnfM-CAU · MW420943.1 · 36,801–36,874 bp · −
rps14 · MW420943.1 · 37,029–37,331 bp · −
psaB · MW420943.1 · 37,460–39,664 bp · −
psaA · MW420943.1 · 39,690–41,942 bp · −
ycf3 · MW420943.1 · 42,645–44,567 bp · −
rps4 · MW420943.1 · 45,812–46,417 bp · −
trnT-UGU · MW420943.1 · 46,759–46,831 bp · −
ndhJ · MW420943.1 · 49,093–49,569 bp · −
ndhK · MW420943.1 · 49,678–50,355 bp · −
ndhC · MW420943.1 · 50,409–50,771 bp · −
trnV-UAC · MW420943.1 · 51,757–52,409 bp · −
atpE · MW420943.1 · 52,864–53,265 bp · −
atpB · MW420943.1 · 53,262–54,758 bp · −
pabJ · MW420943.1 · 64,489–64,611 bp · −
psbL · MW420943.1 · 64,745–64,861 bp · −
psbF · MW420943.1 · 64,885–65,004 bp · −
psbE · MW420943.1 · 65,019–65,270 bp · −
trnW-CCA · MW420943.1 · 66,651–66,724 bp · −
trnP-UGG · MW420943.1 · 66,894–66,967 bp · −
rpl20 · MW420943.1 · 68,772–69,158 bp · −
rps12 · MW420943.1 · 69,941–70,066 bp · −
rps12 · MW420943.1 · 97,218–98,008 bp · −
clpP · MW420943.1 · 70,208–72,135 bp · −
psbN · MW420943.1 · 74,473–74,604 bp · −
rpoA · MW420943.1 · 77,975–78,967 bp · −
rps11 · MW420943.1 · 79,039–79,455 bp · −
rpl36 · MW420943.1 · 79,557–79,670 bp · −
infA · MW420943.1 · 79,765–79,998 bp · −
rps8 · MW420943.1 · 80,122–80,532 bp · −
rpl14 · MW420943.1 · 80,685–81,053 bp · −
rpl16 · MW420943.1 · 81,180–82,418 bp · −
rps3 · MW420943.1 · 82,574–83,236 bp · −
rpl22 · MW420943.1 · 83,238–83,693 bp · −
rps19 · MW420943.1 · 83,753–84,031 bp · −
rpl2 · MW420943.1 · 84,086–85,567 bp · −
rpl23 · MW420943.1 · 85,586–85,867 bp · −
trnI-CAU · MW420943.1 · 86,027–86,100 bp · −
trnL-CAA · MW420943.1 · 93,588–93,668 bp · −
ndhB · MW420943.1 · 94,211–96,422 bp · −
rps7 · MW420943.1 · 96,697–97,164 bp · −
ndhF · MW420943.1 · 109,174–111,435 bp · −
ndhD · MW420943.1 · 113,786–115,315 bp · −
psaC · MW420943.1 · 115,416–115,661 bp · −
ndhE · MW420943.1 · 115,917–116,222 bp · −
ndhG · MW420943.1 · 116,439–116,969 bp · −
ndhI · MW420943.1 · 117,336–117,836 bp · −
ndhA · MW420943.1 · 117,922–120,043 bp · −
ndhH · MW420943.1 · 120,045–121,226 bp · −
rps15 · MW420943.1 · 121,323–121,595 bp · −
ycf1 · MW420943.1 · 121,791–127,316 bp · −
trnR-ACG · MW420943.1 · 128,266–128,339 bp · −
rrn5 · MW420943.1 · 128,574–128,694 bp · −
rrn4.5 · MW420943.1 · 128,942–129,044 bp · −
rrn23 · MW420943.1 · 129,143–131,954 bp · −
trnA-UGC · MW420943.1 · 132,124–133,011 bp · −
trnI-GAU · MW420943.1 · 133,077–134,096 bp · −
rrn16 · MW420943.1 · 134,395–135,885 bp · −
trnV-GAC · MW420943.1 · 136,112–136,183 bp · −
ycf15 · MW420943.1 · 142,435–142,632 bp · −
ycf2 · MW420943.1 · 142,774–149,574 bp · −
psbK · MW420943.1 · 7,452–7,637 bp · +
psbI · MW420943.1 · 8,028–8,138 bp · +
trnG-CGA · MW420943.1 · 9,046–9,802 bp · +
trnR-UCU · MW420943.1 · 9,977–10,048 bp · +
trnC-GCA · MW420943.1 · 28,177–28,247 bp · +
petN · MW420943.1 · 28,963–29,052 bp · +
trnT-GGU · MW420943.1 · 31,670–31,741 bp · +
psbD · MW420943.1 · 33,047–34,108 bp · +
psbC · MW420943.1 · 34,056–35,477 bp · +
psbZ · MW420943.1 · 36,120–36,308 bp · +
trnG-GCC · MW420943.1 · 36,582–36,652 bp · +
trnS-GGA · MW420943.1 · 45,450–45,536 bp · +
trnL-UAA · MW420943.1 · 47,512–48,072 bp · +
trnF-GAA · MW420943.1 · 48,372–48,444 bp · +
trnM-CAU · MW420943.1 · 52,598–52,670 bp · +
rbcL · MW420943.1 · 55,530–56,972 bp · +
accD · MW420943.1 · 57,681–59,159 bp · +
psaI · MW420943.1 · 59,866–59,976 bp · +
ycf4 · MW420943.1 · 60,410–60,964 bp · +
cemA · MW420943.1 · 61,653–62,312 bp · +
petA · MW420943.1 · 62,519–63,481 bp · +
petL · MW420943.1 · 66,148–66,243 bp · +
petG · MW420943.1 · 66,419–66,532 bp · +
psbJ · MW420943.1 · 67,239–67,373 bp · +
rpl33 · MW420943.1 · 67,857–68,057 bp · +
rps18 · MW420943.1 · 68,232–68,537 bp · +
rps12 · MW420943.1 · 137,755–138,545 bp · +
psbB · MW420943.1 · 72,587–74,113 bp · +
psbT · MW420943.1 · 74,305–74,412 bp · +
psbH · MW420943.1 · 74,708–74,929 bp · +
petB · MW420943.1 · 75,054–76,423 bp · +
petD · MW420943.1 · 76,606–77,812 bp · +
ycf2 · MW420943.1 · 86,189–92,989 bp · +
ycf15 · MW420943.1 · 93,131–93,328 bp · +
trnV-GAC · MW420943.1 · 99,580–99,651 bp · +
rrn16 · MW420943.1 · 99,878–101,368 bp · +
trnI-GAU · MW420943.1 · 101,667–102,686 bp · +
trnA-UGC · MW420943.1 · 102,752–103,639 bp · +
rrn23 · MW420943.1 · 103,809–106,620 bp · +
rrn4.5 · MW420943.1 · 106,719–106,821 bp · +
rrn5 · MW420943.1 · 107,069–107,189 bp · +
trnR-ACG · MW420943.1 · 107,424–107,497 bp · +
trnN-GUU · MW420943.1 · 108,046–108,117 bp · +
rpl32 · MW420943.1 · 111,763–111,939 bp · +
trnL-UAG · MW420943.1 · 112,387–112,466 bp · +
ccsA · MW420943.1 · 112,555–113,529 bp · +
trnN-GUU · MW420943.1 · 127,646–127,717 bp · +
rps7 · MW420943.1 · 138,599–139,066 bp · +
ndhB · MW420943.1 · 139,341–141,552 bp · +
trnL-CAA · MW420943.1 · 142,095–142,175 bp · +
trnI-CAU · MW420943.1 · 149,663–149,736 bp · +
rpl23 · MW420943.1 · 149,896–150,177 bp · +
rpl2 · MW420943.1 · 150,196–151,677 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tomentosa
ANNOTATED PLASTOME
MW420943.1
151,777 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37944 75888 113833 151777 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4251 2574 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5158 6315 1158 Locate
trnQ-UUC gene − 7056 7127 72 Locate
psbK gene + 7452 7637 186 Locate
psbI gene + 8028 8138 111 Locate
trnS-GCU gene − 8256 8343 88 Locate
trnG-CGA gene + 9046 9802 757 Locate
trnR-UCU gene + 9977 10048 72 Locate
atpA gene − 10145 11668 1524 Locate
atpF gene − 11750 12979 1230 Locate
atpH gene − 13340 13585 246 Locate
atpI gene − 14573 15316 744 Locate
rps2 gene − 15662 16372 711 Locate
rpoC2 gene − 16588 20793 4206 Locate
rpoC1 gene − 20948 23777 2830 Locate
rpoB gene − 23804 27016 3213 Locate
trnC-GCA gene + 28177 28247 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30061 30165 105 Locate
trnD-GUC gene − 30691 30764 74 Locate
trnY-GUA gene − 30879 30962 84 Locate
trnE-UUC gene − 31022 31094 73 Locate
trnT-GGU gene + 31670 31741 72 Locate
psbD gene + 33047 34108 1062 Locate
psbC gene + 34056 35477 1422 Locate
trnS-UCA gene − 35712 35804 93 Locate
psbZ gene + 36120 36308 189 Locate
trnG-GCC gene + 36582 36652 71 Locate
trnfM-CAU gene − 36801 36874 74 Locate
rps14 gene − 37029 37331 303 Locate
psaB gene − 37460 39664 2205 Locate
psaA gene − 39690 41942 2253 Locate
ycf3 gene − 42645 44567 1923 Locate
trnS-GGA gene + 45450 45536 87 Locate
rps4 gene − 45812 46417 606 Locate
trnT-UGU gene − 46759 46831 73 Locate
trnL-UAA gene + 47512 48072 561 Locate
trnF-GAA gene + 48372 48444 73 Locate
ndhJ gene − 49093 49569 477 Locate
ndhK gene − 49678 50355 678 Locate
ndhC gene − 50409 50771 363 Locate
trnV-UAC gene − 51757 52409 653 Locate
trnM-CAU gene + 52598 52670 73 Locate
atpE gene − 52864 53265 402 Locate
atpB gene − 53262 54758 1497 Locate
rbcL gene + 55530 56972 1443 Locate
accD gene + 57681 59159 1479 Locate
psaI gene + 59866 59976 111 Locate
ycf4 gene + 60410 60964 555 Locate
cemA gene + 61653 62312 660 Locate
petA gene + 62519 63481 963 Locate
pabJ gene − 64489 64611 123 Locate
psbL gene − 64745 64861 117 Locate
psbF gene − 64885 65004 120 Locate
psbE gene − 65019 65270 252 Locate
petL gene + 66148 66243 96 Locate
petG gene + 66419 66532 114 Locate
trnW-CCA gene − 66651 66724 74 Locate
trnP-UGG gene − 66894 66967 74 Locate
psbJ gene + 67239 67373 135 Locate
rpl33 gene + 67857 68057 201 Locate
rps18 gene + 68232 68537 306 Locate
rpl20 gene − 68772 69158 387 Locate
rps12 gene − 69941 70066 126 Locate
clpP gene − 70208 72135 1928 Locate
psbB gene + 72587 74113 1527 Locate
psbT gene + 74305 74412 108 Locate
psbN gene − 74473 74604 132 Locate
psbH gene + 74708 74929 222 Locate
petB gene + 75054 76423 1370 Locate
petD gene + 76606 77812 1207 Locate
rpoA gene − 77975 78967 993 Locate
rps11 gene − 79039 79455 417 Locate
rpl36 gene − 79557 79670 114 Locate
infA gene − 79765 79998 234 Locate
rps8 gene − 80122 80532 411 Locate
rpl14 gene − 80685 81053 369 Locate
rpl16 gene − 81180 82418 1239 Locate
rps3 gene − 82574 83236 663 Locate
rpl22 gene − 83238 83693 456 Locate
rps19 gene − 83753 84031 279 Locate
rpl2 gene − 84086 85567 1482 Locate
rpl23 gene − 85586 85867 282 Locate
trnI-CAU gene − 86027 86100 74 Locate
ycf2 gene + 86189 92989 6801 Locate
ycf15 gene + 93131 93328 198 Locate
trnL-CAA gene − 93588 93668 81 Locate
ndhB gene − 94211 96422 2212 Locate
rps7 gene − 96697 97164 468 Locate
rps12 gene − 97218 98008 791 Locate
trnV-GAC gene + 99580 99651 72 Locate
rrn16 gene + 99878 101368 1491 Locate
trnI-GAU gene + 101667 102686 1020 Locate
trnA-UGC gene + 102752 103639 888 Locate
rrn23 gene + 103809 106620 2812 Locate
rrn4.5 gene + 106719 106821 103 Locate
rrn5 gene + 107069 107189 121 Locate
trnR-ACG gene + 107424 107497 74 Locate
trnN-GUU gene + 108046 108117 72 Locate
ndhF gene − 109174 111435 2262 Locate
rpl32 gene + 111763 111939 177 Locate
trnL-UAG gene + 112387 112466 80 Locate
ccsA gene + 112555 113529 975 Locate
ndhD gene − 113786 115315 1530 Locate
psaC gene − 115416 115661 246 Locate
ndhE gene − 115917 116222 306 Locate
ndhG gene − 116439 116969 531 Locate
ndhI gene − 117336 117836 501 Locate
ndhA gene − 117922 120043 2122 Locate
ndhH gene − 120045 121226 1182 Locate
rps15 gene − 121323 121595 273 Locate
ycf1 gene − 121791 127316 5526 Locate
trnN-GUU gene + 127646 127717 72 Locate
trnR-ACG gene − 128266 128339 74 Locate
rrn5 gene − 128574 128694 121 Locate
rrn4.5 gene − 128942 129044 103 Locate
rrn23 gene − 129143 131954 2812 Locate
trnA-UGC gene − 132124 133011 888 Locate
trnI-GAU gene − 133077 134096 1020 Locate
rrn16 gene − 134395 135885 1491 Locate
trnV-GAC gene − 136112 136183 72 Locate
rps12 gene + 137755 138545 791 Locate
rps7 gene + 138599 139066 468 Locate
ndhB gene + 139341 141552 2212 Locate
trnL-CAA gene + 142095 142175 81 Locate
ycf15 gene − 142435 142632 198 Locate
ycf2 gene − 142774 149574 6801 Locate
trnI-CAU gene + 149663 149736 74 Locate
rpl23 gene + 149896 150177 282 Locate
rpl2 gene + 150196 151677 1482 Locate
Status Available
Accession MW420943.1
Length 151,777 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources