Scutellaria tuberosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059352.1 · 3–76 bp · −
psbA · PQ059352.1 · 364–1,422 bp · −
trnK-UUU · PQ059352.1 · 1,663–4,250 bp · −
matK · PQ059352.1 · 1,958–3,493 bp · −
rps16 · PQ059352.1 · 5,157–6,413 bp · −
trnQ-UUG · PQ059352.1 · 7,169–7,240 bp · −
trnS-GCU · PQ059352.1 · 8,368–8,455 bp · −
atpA · PQ059352.1 · 10,238–11,761 bp · −
atpF · PQ059352.1 · 11,835–13,061 bp · −
atpH · PQ059352.1 · 13,419–13,664 bp · −
atpI · PQ059352.1 · 14,667–15,410 bp · −
rps2 · PQ059352.1 · 15,751–16,461 bp · −
rpoC2 · PQ059352.1 · 16,678–20,883 bp · −
rpoC1 · PQ059352.1 · 21,038–23,866 bp · −
rpoB · PQ059352.1 · 23,893–27,105 bp · −
psbM · PQ059352.1 · 30,229–30,342 bp · −
trnD-GUC · PQ059352.1 · 30,868–30,941 bp · −
trnY-GUA · PQ059352.1 · 31,055–31,138 bp · −
trnE-UUC · PQ059352.1 · 31,198–31,270 bp · −
trnS-UGA · PQ059352.1 · 35,906–35,997 bp · −
trnfM-CAU · PQ059352.1 · 37,000–37,073 bp · −
rps14 · PQ059352.1 · 37,223–37,525 bp · −
psaB · PQ059352.1 · 37,651–39,855 bp · −
psaA · PQ059352.1 · 39,881–42,133 bp · −
ycf3 · PQ059352.1 · 42,807–44,730 bp · −
rps4 · PQ059352.1 · 45,987–46,592 bp · −
trnT-UGU · PQ059352.1 · 46,930–47,002 bp · −
ndhJ · PQ059352.1 · 49,276–49,752 bp · −
ndhK · PQ059352.1 · 49,860–50,537 bp · −
ndhC · PQ059352.1 · 50,590–50,952 bp · −
trnV-UAC · PQ059352.1 · 51,951–52,603 bp · −
atpE · PQ059352.1 · 53,067–53,468 bp · −
atpB · PQ059352.1 · 53,465–54,952 bp · −
psbJ · PQ059352.1 · 64,673–64,795 bp · −
psbL · PQ059352.1 · 64,929–65,150 bp · −
psbF · PQ059352.1 · 65,069–65,188 bp · −
psbE · PQ059352.1 · 65,203–65,454 bp · −
trnW-CCA · PQ059352.1 · 66,866–66,939 bp · −
trnP-UGG · PQ059352.1 · 67,109–67,182 bp · −
rpl20 · PQ059352.1 · 68,983–69,369 bp · −
rps12 · PQ059352.1 · 70,170–70,283 bp · −
rps12 · PQ059352.1 · 97,502–98,292 bp · −
clpP · PQ059352.1 · 70,425–72,356 bp · −
psbN · PQ059352.1 · 74,736–74,867 bp · −
rpoA · PQ059352.1 · 78,232–79,245 bp · −
rps11 · PQ059352.1 · 79,317–79,733 bp · −
rpl36 · PQ059352.1 · 79,835–79,948 bp · −
infA · PQ059352.1 · 80,044–80,277 bp · −
rps8 · PQ059352.1 · 80,398–80,808 bp · −
rpl14 · PQ059352.1 · 80,977–81,345 bp · −
rpl16 · PQ059352.1 · 81,472–82,697 bp · −
rps3 · PQ059352.1 · 82,852–83,514 bp · −
rpl22 · PQ059352.1 · 83,516–83,971 bp · −
rps19 · PQ059352.1 · 84,031–84,309 bp · −
rpl2 · PQ059352.1 · 84,364–85,846 bp · −
rpl23 · PQ059352.1 · 85,865–86,146 bp · −
trnI-CAU · PQ059352.1 · 86,306–86,379 bp · −
trnL-CAA · PQ059352.1 · 93,872–93,952 bp · −
ndhB · PQ059352.1 · 94,495–96,706 bp · −
rps7 · PQ059352.1 · 96,981–97,448 bp · −
trnN-GUU · PQ059352.1 · 108,331–108,402 bp · −
ndhF · PQ059352.1 · 109,479–111,725 bp · −
ndhD · PQ059352.1 · 114,224–115,726 bp · −
psaC · PQ059352.1 · 115,846–116,091 bp · −
ndhE · PQ059352.1 · 116,348–116,653 bp · −
ndhG · PQ059352.1 · 116,874–117,404 bp · −
ndhI · PQ059352.1 · 117,726–118,226 bp · −
ndhA · PQ059352.1 · 118,307–120,397 bp · −
ndhH · PQ059352.1 · 120,399–121,610 bp · −
rps15 · PQ059352.1 · 121,683–121,955 bp · −
ycf1 · PQ059352.1 · 122,223–127,877 bp · −
trnR-ACG · PQ059352.1 · 128,714–128,787 bp · −
rrn5 · PQ059352.1 · 129,022–129,142 bp · −
rrn4.5 · PQ059352.1 · 129,390–129,492 bp · −
rrn23 · PQ059352.1 · 129,591–132,403 bp · −
trnA-UGC · PQ059352.1 · 132,573–133,455 bp · −
trnI-GAU · PQ059352.1 · 133,520–134,540 bp · −
ycf68 · PQ059352.1 · 134,146–134,385 bp · −
rrn16 · PQ059352.1 · 134,839–136,329 bp · −
trnV-GAC · PQ059352.1 · 136,557–136,628 bp · −
ycf15 · PQ059352.1 · 142,882–143,079 bp · −
ycf2 · PQ059352.1 · 143,221–150,030 bp · −
psbK · PQ059352.1 · 7,565–7,750 bp · +
psbI · PQ059352.1 · 8,141–8,251 bp · +
trnG-UCC · PQ059352.1 · 9,144–9,895 bp · +
trnR-UCU · PQ059352.1 · 10,070–10,141 bp · +
trnC-GCA · PQ059352.1 · 28,276–28,346 bp · +
petN · PQ059352.1 · 29,060–29,149 bp · +
trnT-GGU · PQ059352.1 · 31,846–31,917 bp · +
psbD · PQ059352.1 · 33,241–34,302 bp · +
psbC · PQ059352.1 · 34,250–35,671 bp · +
psbZ · PQ059352.1 · 36,318–36,506 bp · +
trnG-GCC · PQ059352.1 · 36,778–36,848 bp · +
trnS-GGA · PQ059352.1 · 45,615–45,701 bp · +
trnL-UAA · PQ059352.1 · 47,681–48,249 bp · +
trnF-GAA · PQ059352.1 · 48,555–48,627 bp · +
trnM-CAU · PQ059352.1 · 52,785–52,857 bp · +
rbcL · PQ059352.1 · 55,703–57,166 bp · +
accD · PQ059352.1 · 57,896–59,362 bp · +
psaI · PQ059352.1 · 60,068–60,178 bp · +
ycf4 · PQ059352.1 · 60,612–61,166 bp · +
cemA · PQ059352.1 · 61,908–62,507 bp · +
petA · PQ059352.1 · 62,714–63,676 bp · +
petL · PQ059352.1 · 66,363–66,458 bp · +
petG · PQ059352.1 · 66,634–66,747 bp · +
psaJ · PQ059352.1 · 67,455–67,589 bp · +
rpl33 · PQ059352.1 · 68,067–68,267 bp · +
rps18 · PQ059352.1 · 68,442–68,747 bp · +
rps12 · PQ059352.1 · 138,206–138,996 bp · +
psbB · PQ059352.1 · 72,831–74,357 bp · +
psbT · PQ059352.1 · 74,560–74,661 bp · +
psbH · PQ059352.1 · 74,971–75,192 bp · +
petB · PQ059352.1 · 75,317–76,679 bp · +
petD · PQ059352.1 · 76,868–78,069 bp · +
ycf2 · PQ059352.1 · 86,468–93,277 bp · +
ycf15 · PQ059352.1 · 93,419–93,616 bp · +
trnV-GAC · PQ059352.1 · 99,870–99,941 bp · +
rrn16 · PQ059352.1 · 100,169–101,659 bp · +
trnI-GAU · PQ059352.1 · 101,958–102,978 bp · +
trnA-UGC · PQ059352.1 · 103,043–103,925 bp · +
rrn23 · PQ059352.1 · 104,095–106,907 bp · +
rrn4.5 · PQ059352.1 · 107,006–107,108 bp · +
rrn5 · PQ059352.1 · 107,356–107,476 bp · +
trnR-ACG · PQ059352.1 · 107,711–107,784 bp · +
rpl32 · PQ059352.1 · 112,247–112,423 bp · +
trnL-UAG · PQ059352.1 · 112,844–112,923 bp · +
ccsA · PQ059352.1 · 113,017–113,991 bp · +
trnN-GUU · PQ059352.1 · 128,096–128,167 bp · +
rps7 · PQ059352.1 · 139,050–139,517 bp · +
ndhB · PQ059352.1 · 139,792–142,003 bp · +
trnL-CAA · PQ059352.1 · 142,546–142,626 bp · +
trnI-CAU · PQ059352.1 · 150,119–150,192 bp · +
rpl23 · PQ059352.1 · 150,352–150,633 bp · +
rpl2 · PQ059352.1 · 150,652–152,134 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tuberosa
ANNOTATED PLASTOME
PQ059352.1
152,229 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38057 76114 114172 152229 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1663 4250 2588 Locate
matK gene − 1958 3493 1536 Locate
rps16 gene − 5157 6413 1257 Locate
trnQ-UUG gene − 7169 7240 72 Locate
psbK gene + 7565 7750 186 Locate
psbI gene + 8141 8251 111 Locate
trnS-GCU gene − 8368 8455 88 Locate
trnG-UCC gene + 9144 9895 752 Locate
trnR-UCU gene + 10070 10141 72 Locate
atpA gene − 10238 11761 1524 Locate
atpF gene − 11835 13061 1227 Locate
atpH gene − 13419 13664 246 Locate
atpI gene − 14667 15410 744 Locate
rps2 gene − 15751 16461 711 Locate
rpoC2 gene − 16678 20883 4206 Locate
rpoC1 gene − 21038 23866 2829 Locate
rpoB gene − 23893 27105 3213 Locate
trnC-GCA gene + 28276 28346 71 Locate
petN gene + 29060 29149 90 Locate
psbM gene − 30229 30342 114 Locate
trnD-GUC gene − 30868 30941 74 Locate
trnY-GUA gene − 31055 31138 84 Locate
trnE-UUC gene − 31198 31270 73 Locate
trnT-GGU gene + 31846 31917 72 Locate
psbD gene + 33241 34302 1062 Locate
psbC gene + 34250 35671 1422 Locate
trnS-UGA gene − 35906 35997 92 Locate
psbZ gene + 36318 36506 189 Locate
trnG-GCC gene + 36778 36848 71 Locate
trnfM-CAU gene − 37000 37073 74 Locate
rps14 gene − 37223 37525 303 Locate
psaB gene − 37651 39855 2205 Locate
psaA gene − 39881 42133 2253 Locate
ycf3 gene − 42807 44730 1924 Locate
trnS-GGA gene + 45615 45701 87 Locate
rps4 gene − 45987 46592 606 Locate
trnT-UGU gene − 46930 47002 73 Locate
trnL-UAA gene + 47681 48249 569 Locate
trnF-GAA gene + 48555 48627 73 Locate
ndhJ gene − 49276 49752 477 Locate
ndhK gene − 49860 50537 678 Locate
ndhC gene − 50590 50952 363 Locate
trnV-UAC gene − 51951 52603 653 Locate
trnM-CAU gene + 52785 52857 73 Locate
atpE gene − 53067 53468 402 Locate
atpB gene − 53465 54952 1488 Locate
rbcL gene + 55703 57166 1464 Locate
accD gene + 57896 59362 1467 Locate
psaI gene + 60068 60178 111 Locate
ycf4 gene + 60612 61166 555 Locate
cemA gene + 61908 62507 600 Locate
petA gene + 62714 63676 963 Locate
psbJ gene − 64673 64795 123 Locate
psbL gene − 64929 65150 222 Locate
psbF gene − 65069 65188 120 Locate
psbE gene − 65203 65454 252 Locate
petL gene + 66363 66458 96 Locate
petG gene + 66634 66747 114 Locate
trnW-CCA gene − 66866 66939 74 Locate
trnP-UGG gene − 67109 67182 74 Locate
psaJ gene + 67455 67589 135 Locate
rpl33 gene + 68067 68267 201 Locate
rps18 gene + 68442 68747 306 Locate
rpl20 gene − 68983 69369 387 Locate
rps12 gene − 70170 70283 114 Locate
clpP gene − 70425 72356 1932 Locate
psbB gene + 72831 74357 1527 Locate
psbT gene + 74560 74661 102 Locate
psbN gene − 74736 74867 132 Locate
psbH gene + 74971 75192 222 Locate
petB gene + 75317 76679 1363 Locate
petD gene + 76868 78069 1202 Locate
rpoA gene − 78232 79245 1014 Locate
rps11 gene − 79317 79733 417 Locate
rpl36 gene − 79835 79948 114 Locate
infA gene − 80044 80277 234 Locate
rps8 gene − 80398 80808 411 Locate
rpl14 gene − 80977 81345 369 Locate
rpl16 gene − 81472 82697 1226 Locate
rps3 gene − 82852 83514 663 Locate
rpl22 gene − 83516 83971 456 Locate
rps19 gene − 84031 84309 279 Locate
rpl2 gene − 84364 85846 1483 Locate
rpl23 gene − 85865 86146 282 Locate
trnI-CAU gene − 86306 86379 74 Locate
ycf2 gene + 86468 93277 6810 Locate
ycf15 gene + 93419 93616 198 Locate
trnL-CAA gene − 93872 93952 81 Locate
ndhB gene − 94495 96706 2212 Locate
rps7 gene − 96981 97448 468 Locate
rps12 gene − 97502 98292 791 Locate
trnV-GAC gene + 99870 99941 72 Locate
rrn16 gene + 100169 101659 1491 Locate
trnI-GAU gene + 101958 102978 1021 Locate
trnA-UGC gene + 103043 103925 883 Locate
rrn23 gene + 104095 106907 2813 Locate
rrn4.5 gene + 107006 107108 103 Locate
rrn5 gene + 107356 107476 121 Locate
trnR-ACG gene + 107711 107784 74 Locate
trnN-GUU gene − 108331 108402 72 Locate
ndhF gene − 109479 111725 2247 Locate
rpl32 gene + 112247 112423 177 Locate
trnL-UAG gene + 112844 112923 80 Locate
ccsA gene + 113017 113991 975 Locate
ndhD gene − 114224 115726 1503 Locate
psaC gene − 115846 116091 246 Locate
ndhE gene − 116348 116653 306 Locate
ndhG gene − 116874 117404 531 Locate
ndhI gene − 117726 118226 501 Locate
ndhA gene − 118307 120397 2091 Locate
ndhH gene − 120399 121610 1212 Locate
rps15 gene − 121683 121955 273 Locate
ycf1 gene − 122223 127877 5655 Locate
trnN-GUU gene + 128096 128167 72 Locate
trnR-ACG gene − 128714 128787 74 Locate
rrn5 gene − 129022 129142 121 Locate
rrn4.5 gene − 129390 129492 103 Locate
rrn23 gene − 129591 132403 2813 Locate
trnA-UGC gene − 132573 133455 883 Locate
trnI-GAU gene − 133520 134540 1021 Locate
ycf68 gene − 134146 134385 240 Locate
rrn16 gene − 134839 136329 1491 Locate
trnV-GAC gene − 136557 136628 72 Locate
rps12 gene + 138206 138996 791 Locate
rps7 gene + 139050 139517 468 Locate
ndhB gene + 139792 142003 2212 Locate
trnL-CAA gene + 142546 142626 81 Locate
ycf15 gene − 142882 143079 198 Locate
ycf2 gene − 143221 150030 6810 Locate
trnI-CAU gene + 150119 150192 74 Locate
rpl23 gene + 150352 150633 282 Locate
rpl2 gene + 150652 152134 1483 Locate
Status Available
Accession PQ059352.1
Length 152,229 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources