Scutellaria tuminensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059353.1 · 3–76 bp · −
psbA · PQ059353.1 · 380–1,438 bp · −
trnK-UUU · PQ059353.1 · 1,671–4,258 bp · −
matK · PQ059353.1 · 1,966–3,501 bp · −
rps16 · PQ059353.1 · 5,162–6,330 bp · −
trnQ-UUG · PQ059353.1 · 7,461–7,532 bp · −
trnS-GCU · PQ059353.1 · 8,661–8,748 bp · −
atpA · PQ059353.1 · 10,538–12,061 bp · −
atpF · PQ059353.1 · 12,135–13,362 bp · −
atpH · PQ059353.1 · 13,732–13,977 bp · −
atpI · PQ059353.1 · 14,974–15,717 bp · −
rps2 · PQ059353.1 · 16,066–16,902 bp · −
rpoC2 · PQ059353.1 · 16,993–21,198 bp · −
rpoC1 · PQ059353.1 · 21,353–24,189 bp · −
rpoB · PQ059353.1 · 24,216–27,428 bp · −
psbM · PQ059353.1 · 30,490–30,594 bp · −
trnD-GUC · PQ059353.1 · 31,120–31,193 bp · −
trnY-GUA · PQ059353.1 · 31,307–31,390 bp · −
trnE-UUC · PQ059353.1 · 31,450–31,522 bp · −
trnS-UGA · PQ059353.1 · 36,153–36,244 bp · −
trnfM-CAU · PQ059353.1 · 37,241–37,314 bp · −
rps14 · PQ059353.1 · 37,464–37,766 bp · −
psaB · PQ059353.1 · 37,894–40,098 bp · −
psaA · PQ059353.1 · 40,124–42,376 bp · −
ycf3 · PQ059353.1 · 43,053–44,976 bp · −
rps4 · PQ059353.1 · 46,235–46,840 bp · −
trnT-UGU · PQ059353.1 · 47,179–47,251 bp · −
ndhJ · PQ059353.1 · 49,533–50,009 bp · −
ndhK · PQ059353.1 · 50,117–50,794 bp · −
ndhC · PQ059353.1 · 50,847–51,209 bp · −
trnV-UAC · PQ059353.1 · 52,206–52,858 bp · −
atpE · PQ059353.1 · 53,321–53,722 bp · −
atpB · PQ059353.1 · 53,719–55,206 bp · −
psbJ · PQ059353.1 · 64,963–65,085 bp · −
psbL · PQ059353.1 · 65,219–65,440 bp · −
psbF · PQ059353.1 · 65,359–65,478 bp · −
psbE · PQ059353.1 · 65,493–65,744 bp · −
trnW-CCA · PQ059353.1 · 67,155–67,228 bp · −
trnP-UGG · PQ059353.1 · 67,398–67,471 bp · −
rpl20 · PQ059353.1 · 69,267–69,653 bp · −
rps12 · PQ059353.1 · 70,455–70,568 bp · −
rps12 · PQ059353.1 · 97,788–98,578 bp · −
clpP · PQ059353.1 · 70,711–72,644 bp · −
psbN · PQ059353.1 · 75,012–75,143 bp · −
rpoA · PQ059353.1 · 78,511–79,524 bp · −
rps11 · PQ059353.1 · 79,596–80,012 bp · −
rpl36 · PQ059353.1 · 80,114–80,227 bp · −
infA · PQ059353.1 · 80,323–80,556 bp · −
rps8 · PQ059353.1 · 80,676–81,086 bp · −
rpl14 · PQ059353.1 · 81,245–81,613 bp · −
rpl16 · PQ059353.1 · 81,740–82,983 bp · −
rps3 · PQ059353.1 · 83,138–83,800 bp · −
rpl22 · PQ059353.1 · 83,802–84,257 bp · −
rps19 · PQ059353.1 · 84,317–84,595 bp · −
rpl2 · PQ059353.1 · 84,650–86,132 bp · −
rpl23 · PQ059353.1 · 86,151–86,432 bp · −
trnI-CAU · PQ059353.1 · 86,592–86,665 bp · −
trnL-CAA · PQ059353.1 · 94,158–94,238 bp · −
ndhB · PQ059353.1 · 94,781–96,938 bp · −
rps7 · PQ059353.1 · 97,267–97,734 bp · −
trnN-GUU · PQ059353.1 · 108,620–108,691 bp · −
ndhF · PQ059353.1 · 109,761–112,001 bp · −
ndhD · PQ059353.1 · 114,524–116,047 bp · −
psaC · PQ059353.1 · 116,146–116,391 bp · −
ndhE · PQ059353.1 · 116,653–116,958 bp · −
ndhG · PQ059353.1 · 117,179–117,709 bp · −
ndhI · PQ059353.1 · 118,073–118,573 bp · −
ndhA · PQ059353.1 · 118,654–120,745 bp · −
ndhH · PQ059353.1 · 120,747–121,928 bp · −
rps15 · PQ059353.1 · 122,031–122,303 bp · −
ycf1 · PQ059353.1 · 122,574–128,327 bp · −
trnR-ACG · PQ059353.1 · 129,058–129,131 bp · −
rrn5 · PQ059353.1 · 129,366–129,486 bp · −
rrn4.5 · PQ059353.1 · 129,734–129,836 bp · −
rrn23 · PQ059353.1 · 129,935–132,747 bp · −
trnA-UGC · PQ059353.1 · 132,917–133,802 bp · −
trnI-GAU · PQ059353.1 · 133,867–134,887 bp · −
ycf68 · PQ059353.1 · 134,493–134,732 bp · −
rrn16 · PQ059353.1 · 135,186–136,676 bp · −
trnV-GAC · PQ059353.1 · 136,904–136,975 bp · −
ycf15 · PQ059353.1 · 143,229–143,426 bp · −
ycf2 · PQ059353.1 · 143,568–150,377 bp · −
psbK · PQ059353.1 · 7,857–8,042 bp · +
psbI · PQ059353.1 · 8,433–8,543 bp · +
trnG-UCC · PQ059353.1 · 9,436–10,195 bp · +
trnR-UCU · PQ059353.1 · 10,370–10,441 bp · +
trnC-GCA · PQ059353.1 · 28,592–28,662 bp · +
petN · PQ059353.1 · 29,373–29,462 bp · +
trnT-GGU · PQ059353.1 · 32,106–32,177 bp · +
psbD · PQ059353.1 · 33,479–34,540 bp · +
psbC · PQ059353.1 · 34,488–35,909 bp · +
psbZ · PQ059353.1 · 36,564–36,752 bp · +
trnG-GCC · PQ059353.1 · 37,024–37,094 bp · +
trnS-GGA · PQ059353.1 · 45,863–45,949 bp · +
trnL-UAA · PQ059353.1 · 47,937–48,505 bp · +
trnF-GAA · PQ059353.1 · 48,812–48,884 bp · +
trnM-CAU · PQ059353.1 · 53,039–53,111 bp · +
rbcL · PQ059353.1 · 55,958–57,421 bp · +
accD · PQ059353.1 · 58,132–59,598 bp · +
psaI · PQ059353.1 · 60,329–60,439 bp · +
ycf4 · PQ059353.1 · 60,873–61,427 bp · +
cemA · PQ059353.1 · 62,176–62,775 bp · +
petA · PQ059353.1 · 62,982–63,944 bp · +
petL · PQ059353.1 · 66,653–66,748 bp · +
petG · PQ059353.1 · 66,923–67,036 bp · +
psaJ · PQ059353.1 · 67,743–67,877 bp · +
rpl33 · PQ059353.1 · 68,349–68,549 bp · +
rps18 · PQ059353.1 · 68,724–69,029 bp · +
rps12 · PQ059353.1 · 138,553–139,343 bp · +
psbB · PQ059353.1 · 73,119–74,645 bp · +
psbT · PQ059353.1 · 74,837–74,938 bp · +
psbH · PQ059353.1 · 75,247–75,468 bp · +
petB · PQ059353.1 · 75,593–76,958 bp · +
petD · PQ059353.1 · 77,147–78,348 bp · +
ycf2 · PQ059353.1 · 86,754–93,563 bp · +
ycf15 · PQ059353.1 · 93,705–93,902 bp · +
trnV-GAC · PQ059353.1 · 100,156–100,227 bp · +
rrn16 · PQ059353.1 · 100,455–101,945 bp · +
trnI-GAU · PQ059353.1 · 102,244–103,264 bp · +
trnA-UGC · PQ059353.1 · 103,329–104,214 bp · +
rrn23 · PQ059353.1 · 104,384–107,196 bp · +
rrn4.5 · PQ059353.1 · 107,295–107,397 bp · +
rrn5 · PQ059353.1 · 107,645–107,765 bp · +
trnR-ACG · PQ059353.1 · 108,000–108,073 bp · +
rpl32 · PQ059353.1 · 112,518–112,694 bp · +
trnL-UAG · PQ059353.1 · 113,141–113,220 bp · +
ccsA · PQ059353.1 · 113,317–114,291 bp · +
trnN-GUU · PQ059353.1 · 128,440–128,511 bp · +
rps7 · PQ059353.1 · 139,397–139,864 bp · +
ndhB · PQ059353.1 · 140,193–142,350 bp · +
trnL-CAA · PQ059353.1 · 142,893–142,973 bp · +
trnI-CAU · PQ059353.1 · 150,466–150,539 bp · +
rpl23 · PQ059353.1 · 150,699–150,980 bp · +
rpl2 · PQ059353.1 · 150,999–152,481 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tuminensis
ANNOTATED PLASTOME
PQ059353.1
152,576 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38144 76288 114432 152576 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5162 6330 1169 Locate
trnQ-UUG gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8433 8543 111 Locate
trnS-GCU gene − 8661 8748 88 Locate
trnG-UCC gene + 9436 10195 760 Locate
trnR-UCU gene + 10370 10441 72 Locate
atpA gene − 10538 12061 1524 Locate
atpF gene − 12135 13362 1228 Locate
atpH gene − 13732 13977 246 Locate
atpI gene − 14974 15717 744 Locate
rps2 gene − 16066 16902 837 Locate
rpoC2 gene − 16993 21198 4206 Locate
rpoC1 gene − 21353 24189 2837 Locate
rpoB gene − 24216 27428 3213 Locate
trnC-GCA gene + 28592 28662 71 Locate
petN gene + 29373 29462 90 Locate
psbM gene − 30490 30594 105 Locate
trnD-GUC gene − 31120 31193 74 Locate
trnY-GUA gene − 31307 31390 84 Locate
trnE-UUC gene − 31450 31522 73 Locate
trnT-GGU gene + 32106 32177 72 Locate
psbD gene + 33479 34540 1062 Locate
psbC gene + 34488 35909 1422 Locate
trnS-UGA gene − 36153 36244 92 Locate
psbZ gene + 36564 36752 189 Locate
trnG-GCC gene + 37024 37094 71 Locate
trnfM-CAU gene − 37241 37314 74 Locate
rps14 gene − 37464 37766 303 Locate
psaB gene − 37894 40098 2205 Locate
psaA gene − 40124 42376 2253 Locate
ycf3 gene − 43053 44976 1924 Locate
trnS-GGA gene + 45863 45949 87 Locate
rps4 gene − 46235 46840 606 Locate
trnT-UGU gene − 47179 47251 73 Locate
trnL-UAA gene + 47937 48505 569 Locate
trnF-GAA gene + 48812 48884 73 Locate
ndhJ gene − 49533 50009 477 Locate
ndhK gene − 50117 50794 678 Locate
ndhC gene − 50847 51209 363 Locate
trnV-UAC gene − 52206 52858 653 Locate
trnM-CAU gene + 53039 53111 73 Locate
atpE gene − 53321 53722 402 Locate
atpB gene − 53719 55206 1488 Locate
rbcL gene + 55958 57421 1464 Locate
accD gene + 58132 59598 1467 Locate
psaI gene + 60329 60439 111 Locate
ycf4 gene + 60873 61427 555 Locate
cemA gene + 62176 62775 600 Locate
petA gene + 62982 63944 963 Locate
psbJ gene − 64963 65085 123 Locate
psbL gene − 65219 65440 222 Locate
psbF gene − 65359 65478 120 Locate
psbE gene − 65493 65744 252 Locate
petL gene + 66653 66748 96 Locate
petG gene + 66923 67036 114 Locate
trnW-CCA gene − 67155 67228 74 Locate
trnP-UGG gene − 67398 67471 74 Locate
psaJ gene + 67743 67877 135 Locate
rpl33 gene + 68349 68549 201 Locate
rps18 gene + 68724 69029 306 Locate
rpl20 gene − 69267 69653 387 Locate
rps12 gene − 70455 70568 114 Locate
clpP gene − 70711 72644 1934 Locate
psbB gene + 73119 74645 1527 Locate
psbT gene + 74837 74938 102 Locate
psbN gene − 75012 75143 132 Locate
psbH gene + 75247 75468 222 Locate
petB gene + 75593 76958 1366 Locate
petD gene + 77147 78348 1202 Locate
rpoA gene − 78511 79524 1014 Locate
rps11 gene − 79596 80012 417 Locate
rpl36 gene − 80114 80227 114 Locate
infA gene − 80323 80556 234 Locate
rps8 gene − 80676 81086 411 Locate
rpl14 gene − 81245 81613 369 Locate
rpl16 gene − 81740 82983 1244 Locate
rps3 gene − 83138 83800 663 Locate
rpl22 gene − 83802 84257 456 Locate
rps19 gene − 84317 84595 279 Locate
rpl2 gene − 84650 86132 1483 Locate
rpl23 gene − 86151 86432 282 Locate
trnI-CAU gene − 86592 86665 74 Locate
ycf2 gene + 86754 93563 6810 Locate
ycf15 gene + 93705 93902 198 Locate
trnL-CAA gene − 94158 94238 81 Locate
ndhB gene − 94781 96938 2158 Locate
rps7 gene − 97267 97734 468 Locate
rps12 gene − 97788 98578 791 Locate
trnV-GAC gene + 100156 100227 72 Locate
rrn16 gene + 100455 101945 1491 Locate
trnI-GAU gene + 102244 103264 1021 Locate
trnA-UGC gene + 103329 104214 886 Locate
rrn23 gene + 104384 107196 2813 Locate
rrn4.5 gene + 107295 107397 103 Locate
rrn5 gene + 107645 107765 121 Locate
trnR-ACG gene + 108000 108073 74 Locate
trnN-GUU gene − 108620 108691 72 Locate
ndhF gene − 109761 112001 2241 Locate
rpl32 gene + 112518 112694 177 Locate
trnL-UAG gene + 113141 113220 80 Locate
ccsA gene + 113317 114291 975 Locate
ndhD gene − 114524 116047 1524 Locate
psaC gene − 116146 116391 246 Locate
ndhE gene − 116653 116958 306 Locate
ndhG gene − 117179 117709 531 Locate
ndhI gene − 118073 118573 501 Locate
ndhA gene − 118654 120745 2092 Locate
ndhH gene − 120747 121928 1182 Locate
rps15 gene − 122031 122303 273 Locate
ycf1 gene − 122574 128327 5754 Locate
trnN-GUU gene + 128440 128511 72 Locate
trnR-ACG gene − 129058 129131 74 Locate
rrn5 gene − 129366 129486 121 Locate
rrn4.5 gene − 129734 129836 103 Locate
rrn23 gene − 129935 132747 2813 Locate
trnA-UGC gene − 132917 133802 886 Locate
trnI-GAU gene − 133867 134887 1021 Locate
ycf68 gene − 134493 134732 240 Locate
rrn16 gene − 135186 136676 1491 Locate
trnV-GAC gene − 136904 136975 72 Locate
rps12 gene + 138553 139343 791 Locate
rps7 gene + 139397 139864 468 Locate
ndhB gene + 140193 142350 2158 Locate
trnL-CAA gene + 142893 142973 81 Locate
ycf15 gene − 143229 143426 198 Locate
ycf2 gene − 143568 150377 6810 Locate
trnI-CAU gene + 150466 150539 74 Locate
rpl23 gene + 150699 150980 282 Locate
rpl2 gene + 150999 152481 1483 Locate
Status Available
Accession PQ059353.1
Length 152,576 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources