Scutellaria uliginosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058274.1 · 3–76 bp · −
psbA · PQ058274.1 · 377–1,435 bp · −
trnK-UUU · PQ058274.1 · 1,681–4,260 bp · −
matK · PQ058274.1 · 1,968–3,503 bp · −
rps16 · PQ058274.1 · 5,177–6,304 bp · −
trnQ-UUG · PQ058274.1 · 7,438–7,509 bp · −
trnS-GCU · PQ058274.1 · 8,627–8,714 bp · −
atpA · PQ058274.1 · 10,495–12,018 bp · −
atpF · PQ058274.1 · 12,101–13,330 bp · −
atpH · PQ058274.1 · 13,694–13,939 bp · −
atpI · PQ058274.1 · 14,934–15,677 bp · −
rps2 · PQ058274.1 · 16,020–16,730 bp · −
rpoC2 · PQ058274.1 · 16,946–21,151 bp · −
rpoC1 · PQ058274.1 · 21,297–24,132 bp · −
rpoB · PQ058274.1 · 24,159–27,371 bp · −
psbM · PQ058274.1 · 30,416–30,529 bp · −
trnD-GUC · PQ058274.1 · 31,048–31,121 bp · −
trnY-GUA · PQ058274.1 · 31,235–31,318 bp · −
trnE-UUC · PQ058274.1 · 31,378–31,450 bp · −
trnS-UGA · PQ058274.1 · 36,062–36,153 bp · −
trnfM-CAU · PQ058274.1 · 37,148–37,221 bp · −
rps14 · PQ058274.1 · 37,371–37,673 bp · −
psaB · PQ058274.1 · 37,800–40,004 bp · −
psaA · PQ058274.1 · 40,030–42,282 bp · −
ycf3 · PQ058274.1 · 42,982–44,904 bp · −
rps4 · PQ058274.1 · 46,148–46,753 bp · −
trnT-UGU · PQ058274.1 · 47,089–47,161 bp · −
ndhJ · PQ058274.1 · 49,413–49,889 bp · −
ndhK · PQ058274.1 · 49,997–50,674 bp · −
ndhC · PQ058274.1 · 50,727–51,089 bp · −
trnV-UAC · PQ058274.1 · 51,547–52,200 bp · −
atpE · PQ058274.1 · 52,662–53,063 bp · −
atpB · PQ058274.1 · 53,060–54,556 bp · −
psbJ · PQ058274.1 · 64,325–64,447 bp · −
psbL · PQ058274.1 · 64,582–64,803 bp · −
psbF · PQ058274.1 · 64,722–64,841 bp · −
psbE · PQ058274.1 · 64,856–65,107 bp · −
trnW-CCA · PQ058274.1 · 66,509–66,582 bp · −
trnP-UGG · PQ058274.1 · 66,752–66,825 bp · −
rpl20 · PQ058274.1 · 68,662–69,048 bp · −
rps12 · PQ058274.1 · 69,833–69,958 bp · −
rps12 · PQ058274.1 · 97,081–97,871 bp · −
clpP · PQ058274.1 · 70,099–72,044 bp · −
psbN · PQ058274.1 · 74,398–74,529 bp · −
rpoA · PQ058274.1 · 77,868–78,875 bp · −
rps11 · PQ058274.1 · 78,947–79,363 bp · −
rpl36 · PQ058274.1 · 79,464–79,577 bp · −
infA · PQ058274.1 · 79,673–79,906 bp · −
rps8 · PQ058274.1 · 80,022–80,432 bp · −
rpl14 · PQ058274.1 · 80,599–80,967 bp · −
rpl16 · PQ058274.1 · 81,079–82,329 bp · −
rps3 · PQ058274.1 · 82,434–83,096 bp · −
rpl22 · PQ058274.1 · 83,123–83,554 bp · −
rps19 · PQ058274.1 · 83,614–83,892 bp · −
rpl2 · PQ058274.1 · 83,947–85,429 bp · −
rpl23 · PQ058274.1 · 85,448–85,729 bp · −
trnI-CAU · PQ058274.1 · 85,889–85,962 bp · −
trnL-CAA · PQ058274.1 · 93,460–93,540 bp · −
ndhB · PQ058274.1 · 94,074–96,231 bp · −
rps7 · PQ058274.1 · 96,560–97,027 bp · −
trnN-GUU · PQ058274.1 · 107,920–107,991 bp · −
ndhF · PQ058274.1 · 109,068–111,299 bp · −
ndhD · PQ058274.1 · 113,809–115,311 bp · −
psaC · PQ058274.1 · 115,439–115,684 bp · −
ndhE · PQ058274.1 · 115,923–116,228 bp · −
ndhG · PQ058274.1 · 116,450–116,980 bp · −
ndhI · PQ058274.1 · 117,333–117,833 bp · −
ndhA · PQ058274.1 · 117,914–120,012 bp · −
ndhH · PQ058274.1 · 120,014–121,225 bp · −
rps15 · PQ058274.1 · 121,284–121,556 bp · −
ycf1 · PQ058274.1 · 121,843–127,263 bp · −
trnR-ACG · PQ058274.1 · 128,221–128,294 bp · −
rrn5 · PQ058274.1 · 128,529–128,649 bp · −
rrn4.5 · PQ058274.1 · 128,897–128,999 bp · −
rrn23 · PQ058274.1 · 129,098–131,910 bp · −
trnA-UGC · PQ058274.1 · 132,080–132,964 bp · −
trnI-GAU · PQ058274.1 · 133,029–134,048 bp · −
ycf68 · PQ058274.1 · 133,600–133,893 bp · −
rrn16 · PQ058274.1 · 134,347–135,837 bp · −
trnV-GAC · PQ058274.1 · 136,065–136,136 bp · −
ycf15 · PQ058274.1 · 142,385–142,582 bp · −
ycf2 · PQ058274.1 · 142,724–149,533 bp · −
psbK · PQ058274.1 · 7,834–8,019 bp · +
psbI · PQ058274.1 · 8,414–8,524 bp · +
trnG-UCC · PQ058274.1 · 9,394–10,152 bp · +
trnR-UCU · PQ058274.1 · 10,327–10,398 bp · +
trnC-GCA · PQ058274.1 · 28,530–28,600 bp · +
petN · PQ058274.1 · 29,303–29,392 bp · +
trnT-GGU · PQ058274.1 · 32,014–32,085 bp · +
psbD · PQ058274.1 · 33,394–34,455 bp · +
psbC · PQ058274.1 · 34,403–35,824 bp · +
psbZ · PQ058274.1 · 36,473–36,661 bp · +
trnG-GCC · PQ058274.1 · 36,933–37,003 bp · +
trnS-GGA · PQ058274.1 · 45,778–45,864 bp · +
trnL-UAA · PQ058274.1 · 47,842–48,407 bp · +
trnF-GAA · PQ058274.1 · 48,691–48,763 bp · +
trnM-CAU · PQ058274.1 · 52,381–52,453 bp · +
rbcL · PQ058274.1 · 55,314–56,774 bp · +
accD · PQ058274.1 · 57,496–58,974 bp · +
psaI · PQ058274.1 · 59,690–59,800 bp · +
ycf4 · PQ058274.1 · 60,234–60,788 bp · +
cemA · PQ058274.1 · 61,529–62,128 bp · +
petA · PQ058274.1 · 62,335–63,297 bp · +
petL · PQ058274.1 · 66,015–66,110 bp · +
petG · PQ058274.1 · 66,286–66,399 bp · +
psaJ · PQ058274.1 · 67,099–67,233 bp · +
rpl33 · PQ058274.1 · 67,721–67,921 bp · +
rps18 · PQ058274.1 · 68,118–68,423 bp · +
rps12 · PQ058274.1 · 137,713–138,503 bp · +
psbB · PQ058274.1 · 72,507–74,033 bp · +
psbT · PQ058274.1 · 74,229–74,336 bp · +
psbH · PQ058274.1 · 74,633–74,854 bp · +
petB · PQ058274.1 · 74,980–76,306 bp · +
petD · PQ058274.1 · 76,495–77,705 bp · +
ycf2 · PQ058274.1 · 86,051–92,860 bp · +
ycf15 · PQ058274.1 · 93,002–93,199 bp · +
trnV-GAC · PQ058274.1 · 99,448–99,519 bp · +
rrn16 · PQ058274.1 · 99,747–101,237 bp · +
trnI-GAU · PQ058274.1 · 101,536–102,555 bp · +
trnA-UGC · PQ058274.1 · 102,620–103,504 bp · +
rrn23 · PQ058274.1 · 103,674–106,486 bp · +
rrn4.5 · PQ058274.1 · 106,585–106,687 bp · +
rrn5 · PQ058274.1 · 106,935–107,055 bp · +
trnR-ACG · PQ058274.1 · 107,290–107,363 bp · +
rpl32 · PQ058274.1 · 111,821–111,997 bp · +
trnL-UAG · PQ058274.1 · 112,432–112,511 bp · +
ccsA · PQ058274.1 · 112,610–113,584 bp · +
trnN-GUU · PQ058274.1 · 127,593–127,664 bp · +
rps7 · PQ058274.1 · 138,557–139,024 bp · +
ndhB · PQ058274.1 · 139,353–141,510 bp · +
trnL-CAA · PQ058274.1 · 142,044–142,124 bp · +
trnI-CAU · PQ058274.1 · 149,622–149,695 bp · +
rpl23 · PQ058274.1 · 149,855–150,136 bp · +
rpl2 · PQ058274.1 · 150,155–151,637 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria uliginosa
ANNOTATED PLASTOME
PQ058274.1
151,732 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37933 75866 113799 151732 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1681 4260 2580 Locate
matK gene − 1968 3503 1536 Locate
rps16 gene − 5177 6304 1128 Locate
trnQ-UUG gene − 7438 7509 72 Locate
psbK gene + 7834 8019 186 Locate
psbI gene + 8414 8524 111 Locate
trnS-GCU gene − 8627 8714 88 Locate
trnG-UCC gene + 9394 10152 759 Locate
trnR-UCU gene + 10327 10398 72 Locate
atpA gene − 10495 12018 1524 Locate
atpF gene − 12101 13330 1230 Locate
atpH gene − 13694 13939 246 Locate
atpI gene − 14934 15677 744 Locate
rps2 gene − 16020 16730 711 Locate
rpoC2 gene − 16946 21151 4206 Locate
rpoC1 gene − 21297 24132 2836 Locate
rpoB gene − 24159 27371 3213 Locate
trnC-GCA gene + 28530 28600 71 Locate
petN gene + 29303 29392 90 Locate
psbM gene − 30416 30529 114 Locate
trnD-GUC gene − 31048 31121 74 Locate
trnY-GUA gene − 31235 31318 84 Locate
trnE-UUC gene − 31378 31450 73 Locate
trnT-GGU gene + 32014 32085 72 Locate
psbD gene + 33394 34455 1062 Locate
psbC gene + 34403 35824 1422 Locate
trnS-UGA gene − 36062 36153 92 Locate
psbZ gene + 36473 36661 189 Locate
trnG-GCC gene + 36933 37003 71 Locate
trnfM-CAU gene − 37148 37221 74 Locate
rps14 gene − 37371 37673 303 Locate
psaB gene − 37800 40004 2205 Locate
psaA gene − 40030 42282 2253 Locate
ycf3 gene − 42982 44904 1923 Locate
trnS-GGA gene + 45778 45864 87 Locate
rps4 gene − 46148 46753 606 Locate
trnT-UGU gene − 47089 47161 73 Locate
trnL-UAA gene + 47842 48407 566 Locate
trnF-GAA gene + 48691 48763 73 Locate
ndhJ gene − 49413 49889 477 Locate
ndhK gene − 49997 50674 678 Locate
ndhC gene − 50727 51089 363 Locate
trnV-UAC gene − 51547 52200 654 Locate
trnM-CAU gene + 52381 52453 73 Locate
atpE gene − 52662 53063 402 Locate
atpB gene − 53060 54556 1497 Locate
rbcL gene + 55314 56774 1461 Locate
accD gene + 57496 58974 1479 Locate
psaI gene + 59690 59800 111 Locate
ycf4 gene + 60234 60788 555 Locate
cemA gene + 61529 62128 600 Locate
petA gene + 62335 63297 963 Locate
psbJ gene − 64325 64447 123 Locate
psbL gene − 64582 64803 222 Locate
psbF gene − 64722 64841 120 Locate
psbE gene − 64856 65107 252 Locate
petL gene + 66015 66110 96 Locate
petG gene + 66286 66399 114 Locate
trnW-CCA gene − 66509 66582 74 Locate
trnP-UGG gene − 66752 66825 74 Locate
psaJ gene + 67099 67233 135 Locate
rpl33 gene + 67721 67921 201 Locate
rps18 gene + 68118 68423 306 Locate
rpl20 gene − 68662 69048 387 Locate
rps12 gene − 69833 69958 126 Locate
clpP gene − 70099 72044 1946 Locate
psbB gene + 72507 74033 1527 Locate
psbT gene + 74229 74336 108 Locate
psbN gene − 74398 74529 132 Locate
psbH gene + 74633 74854 222 Locate
petB gene + 74980 76306 1327 Locate
petD gene + 76495 77705 1211 Locate
rpoA gene − 77868 78875 1008 Locate
rps11 gene − 78947 79363 417 Locate
rpl36 gene − 79464 79577 114 Locate
infA gene − 79673 79906 234 Locate
rps8 gene − 80022 80432 411 Locate
rpl14 gene − 80599 80967 369 Locate
rpl16 gene − 81079 82329 1251 Locate
rps3 gene − 82434 83096 663 Locate
rpl22 gene − 83123 83554 432 Locate
rps19 gene − 83614 83892 279 Locate
rpl2 gene − 83947 85429 1483 Locate
rpl23 gene − 85448 85729 282 Locate
trnI-CAU gene − 85889 85962 74 Locate
ycf2 gene + 86051 92860 6810 Locate
ycf15 gene + 93002 93199 198 Locate
trnL-CAA gene − 93460 93540 81 Locate
ndhB gene − 94074 96231 2158 Locate
rps7 gene − 96560 97027 468 Locate
rps12 gene − 97081 97871 791 Locate
trnV-GAC gene + 99448 99519 72 Locate
rrn16 gene + 99747 101237 1491 Locate
trnI-GAU gene + 101536 102555 1020 Locate
trnA-UGC gene + 102620 103504 885 Locate
rrn23 gene + 103674 106486 2813 Locate
rrn4.5 gene + 106585 106687 103 Locate
rrn5 gene + 106935 107055 121 Locate
trnR-ACG gene + 107290 107363 74 Locate
trnN-GUU gene − 107920 107991 72 Locate
ndhF gene − 109068 111299 2232 Locate
rpl32 gene + 111821 111997 177 Locate
trnL-UAG gene + 112432 112511 80 Locate
ccsA gene + 112610 113584 975 Locate
ndhD gene − 113809 115311 1503 Locate
psaC gene − 115439 115684 246 Locate
ndhE gene − 115923 116228 306 Locate
ndhG gene − 116450 116980 531 Locate
ndhI gene − 117333 117833 501 Locate
ndhA gene − 117914 120012 2099 Locate
ndhH gene − 120014 121225 1212 Locate
rps15 gene − 121284 121556 273 Locate
ycf1 gene − 121843 127263 5421 Locate
trnN-GUU gene + 127593 127664 72 Locate
trnR-ACG gene − 128221 128294 74 Locate
rrn5 gene − 128529 128649 121 Locate
rrn4.5 gene − 128897 128999 103 Locate
rrn23 gene − 129098 131910 2813 Locate
trnA-UGC gene − 132080 132964 885 Locate
trnI-GAU gene − 133029 134048 1020 Locate
ycf68 gene − 133600 133893 294 Locate
rrn16 gene − 134347 135837 1491 Locate
trnV-GAC gene − 136065 136136 72 Locate
rps12 gene + 137713 138503 791 Locate
rps7 gene + 138557 139024 468 Locate
ndhB gene + 139353 141510 2158 Locate
trnL-CAA gene + 142044 142124 81 Locate
ycf15 gene − 142385 142582 198 Locate
ycf2 gene − 142724 149533 6810 Locate
trnI-CAU gene + 149622 149695 74 Locate
rpl23 gene + 149855 150136 282 Locate
rpl2 gene + 150155 151637 1483 Locate
Status Available
Accession PQ058274.1
Length 151,732 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources