Scutellaria urticifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130059.1 · 4–77 bp · −
psbA · PZ130059.1 · 364–1,422 bp · −
trnK-UUU · PZ130059.1 · 1,664–4,246 bp · −
matK · PZ130059.1 · 1,955–3,481 bp · −
rps16 · PZ130059.1 · 5,146–6,306 bp · −
trnQ-UUG · PZ130059.1 · 7,052–7,123 bp · −
trnS-GCU · PZ130059.1 · 8,251–8,338 bp · −
atpA · PZ130059.1 · 10,140–11,663 bp · −
atpF · PZ130059.1 · 11,746–12,975 bp · −
atpH · PZ130059.1 · 13,336–13,581 bp · −
atpI · PZ130059.1 · 14,569–15,312 bp · −
rps2 · PZ130059.1 · 15,658–16,368 bp · −
rpoC2 · PZ130059.1 · 16,583–20,788 bp · −
rpoC1 · PZ130059.1 · 20,943–23,772 bp · −
rpoB · PZ130059.1 · 23,799–27,011 bp · −
psbM · PZ130059.1 · 30,075–30,179 bp · −
trnD-GUC · PZ130059.1 · 30,705–30,778 bp · −
trnY-GUA · PZ130059.1 · 30,892–30,975 bp · −
trnE-UUC · PZ130059.1 · 31,035–31,107 bp · −
trnS-UGA · PZ130059.1 · 35,726–35,817 bp · −
trnfM-CAU · PZ130059.1 · 36,813–36,886 bp · −
rps14 · PZ130059.1 · 37,041–37,343 bp · −
psaB · PZ130059.1 · 37,472–39,676 bp · −
psaA · PZ130059.1 · 39,702–41,954 bp · −
ycf3 · PZ130059.1 · 42,645–44,567 bp · −
rps4 · PZ130059.1 · 45,812–46,417 bp · −
trnT-UGU · PZ130059.1 · 46,760–46,832 bp · −
ndhJ · PZ130059.1 · 49,093–49,569 bp · −
ndhK · PZ130059.1 · 49,678–50,355 bp · −
ndhC · PZ130059.1 · 50,409–50,771 bp · −
trnV-UAC · PZ130059.1 · 51,757–52,409 bp · −
atpE · PZ130059.1 · 52,864–53,265 bp · −
atpB · PZ130059.1 · 53,262–54,758 bp · −
psbJ · PZ130059.1 · 64,496–64,618 bp · −
psbL · PZ130059.1 · 64,752–64,868 bp · −
psbF · PZ130059.1 · 64,892–65,011 bp · −
psbE · PZ130059.1 · 65,026–65,277 bp · −
trnW-CCA · PZ130059.1 · 66,657–66,730 bp · −
trnP-UGG · PZ130059.1 · 66,900–66,973 bp · −
rpl20 · PZ130059.1 · 68,770–69,156 bp · −
rps12 · PZ130059.1 · 69,941–70,066 bp · −
rps12 · PZ130059.1 · 97,210–98,000 bp · −
clpP · PZ130059.1 · 70,207–72,136 bp · −
psbN · PZ130059.1 · 74,473–74,604 bp · −
rpoA · PZ130059.1 · 78,166–78,966 bp · −
rps11 · PZ130059.1 · 79,038–79,454 bp · −
rpl36 · PZ130059.1 · 79,556–79,669 bp · −
infA · PZ130059.1 · 79,764–79,997 bp · −
rps8 · PZ130059.1 · 80,120–80,530 bp · −
rpl14 · PZ130059.1 · 80,682–81,050 bp · −
rpl16 · PZ130059.1 · 81,177–82,410 bp · −
rps3 · PZ130059.1 · 82,566–83,228 bp · −
rpl22 · PZ130059.1 · 83,230–83,685 bp · −
rps19 · PZ130059.1 · 83,745–84,023 bp · −
rpl2 · PZ130059.1 · 84,078–85,559 bp · −
rpl23 · PZ130059.1 · 85,578–85,859 bp · −
trnI-CAU · PZ130059.1 · 86,019–86,092 bp · −
trnL-CAA · PZ130059.1 · 93,580–93,660 bp · −
ndhB · PZ130059.1 · 94,203–96,414 bp · −
rps7 · PZ130059.1 · 96,689–97,156 bp · −
trnN-GUU · PZ130059.1 · 108,034–108,105 bp · −
ndhF · PZ130059.1 · 109,162–111,423 bp · −
ndhD · PZ130059.1 · 113,788–115,317 bp · −
psaC · PZ130059.1 · 115,418–115,663 bp · −
ndhE · PZ130059.1 · 115,919–116,224 bp · −
ndhG · PZ130059.1 · 116,441–116,971 bp · −
ndhI · PZ130059.1 · 117,338–117,838 bp · −
ndhA · PZ130059.1 · 117,924–120,045 bp · −
ndhH · PZ130059.1 · 120,047–121,258 bp · −
rps15 · PZ130059.1 · 121,325–121,597 bp · −
ycf1 · PZ130059.1 · 121,795–127,431 bp · −
trnR-ACG · PZ130059.1 · 128,270–128,343 bp · −
rrn5 · PZ130059.1 · 128,578–128,698 bp · −
rrn4.5 · PZ130059.1 · 128,946–129,048 bp · −
rrn23 · PZ130059.1 · 129,147–131,958 bp · −
trnA-UGC · PZ130059.1 · 132,121–133,011 bp · −
trnI-GAU · PZ130059.1 · 133,076–134,096 bp · −
ycf68 · PZ130059.1 · 133,648–133,941 bp · −
rrn16 · PZ130059.1 · 134,395–135,885 bp · −
trnV-GAC · PZ130059.1 · 136,112–136,183 bp · −
ycf15 · PZ130059.1 · 142,435–142,683 bp · −
ycf2 · PZ130059.1 · 142,774–149,574 bp · −
psbK · PZ130059.1 · 7,448–7,633 bp · +
psbI · PZ130059.1 · 8,023–8,133 bp · +
trnG-UCC · PZ130059.1 · 9,041–9,797 bp · +
trnR-UCU · PZ130059.1 · 9,972–10,043 bp · +
trnC-GCA · PZ130059.1 · 28,172–28,242 bp · +
petN · PZ130059.1 · 28,956–29,045 bp · +
trnT-GGU · PZ130059.1 · 31,683–31,754 bp · +
psbD · PZ130059.1 · 33,060–34,121 bp · +
psbC · PZ130059.1 · 34,069–35,490 bp · +
psbZ · PZ130059.1 · 36,133–36,321 bp · +
trnG-GCC · PZ130059.1 · 36,597–36,667 bp · +
trnS-GGA · PZ130059.1 · 45,450–45,536 bp · +
trnL-UAA · PZ130059.1 · 47,513–48,072 bp · +
trnF-GAA · PZ130059.1 · 48,373–48,445 bp · +
trnM-CAU · PZ130059.1 · 52,598–52,670 bp · +
rbcL · PZ130059.1 · 55,510–56,973 bp · +
accD · PZ130059.1 · 57,687–59,165 bp · +
psaI · PZ130059.1 · 59,872–59,982 bp · +
ycf4 · PZ130059.1 · 60,416–60,970 bp · +
cemA · PZ130059.1 · 61,719–62,318 bp · +
petA · PZ130059.1 · 62,525–63,487 bp · +
petL · PZ130059.1 · 66,154–66,249 bp · +
petG · PZ130059.1 · 66,425–66,538 bp · +
psaJ · PZ130059.1 · 67,182–67,379 bp · +
rpl33 · PZ130059.1 · 67,855–68,055 bp · +
rps18 · PZ130059.1 · 68,230–68,535 bp · +
rps12 · PZ130059.1 · 137,755–138,545 bp · +
psbB · PZ130059.1 · 72,588–74,114 bp · +
psbT · PZ130059.1 · 74,305–74,412 bp · +
psbH · PZ130059.1 · 74,708–74,929 bp · +
petB · PZ130059.1 · 75,054–76,422 bp · +
petD · PZ130059.1 · 76,605–77,811 bp · +
ycf2 · PZ130059.1 · 86,181–92,981 bp · +
ycf15 · PZ130059.1 · 93,072–93,320 bp · +
trnV-GAC · PZ130059.1 · 99,572–99,643 bp · +
rrn16 · PZ130059.1 · 99,870–101,360 bp · +
trnI-GAU · PZ130059.1 · 101,659–102,679 bp · +
trnA-UGC · PZ130059.1 · 102,744–103,634 bp · +
rrn23 · PZ130059.1 · 103,797–106,608 bp · +
rrn4.5 · PZ130059.1 · 106,707–106,809 bp · +
rrn5 · PZ130059.1 · 107,057–107,177 bp · +
trnR-ACG · PZ130059.1 · 107,412–107,485 bp · +
rpl32 · PZ130059.1 · 111,751–111,927 bp · +
trnL-UAG · PZ130059.1 · 112,376–112,455 bp · +
ccsA · PZ130059.1 · 112,557–113,531 bp · +
trnN-GUU · PZ130059.1 · 127,650–127,721 bp · +
rps7 · PZ130059.1 · 138,599–139,066 bp · +
ndhB · PZ130059.1 · 139,341–141,552 bp · +
trnL-CAA · PZ130059.1 · 142,095–142,175 bp · +
trnI-CAU · PZ130059.1 · 149,663–149,736 bp · +
rpl23 · PZ130059.1 · 149,896–150,177 bp · +
rpl2 · PZ130059.1 · 150,196–151,677 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria urticifolia
ANNOTATED PLASTOME
PZ130059.1
151,777 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37944 75888 113833 151777 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1664 4246 2583 Locate
matK gene − 1955 3481 1527 Locate
rps16 gene − 5146 6306 1161 Locate
trnQ-UUG gene − 7052 7123 72 Locate
psbK gene + 7448 7633 186 Locate
psbI gene + 8023 8133 111 Locate
trnS-GCU gene − 8251 8338 88 Locate
trnG-UCC gene + 9041 9797 757 Locate
trnR-UCU gene + 9972 10043 72 Locate
atpA gene − 10140 11663 1524 Locate
atpF gene − 11746 12975 1230 Locate
atpH gene − 13336 13581 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15658 16368 711 Locate
rpoC2 gene − 16583 20788 4206 Locate
rpoC1 gene − 20943 23772 2830 Locate
rpoB gene − 23799 27011 3213 Locate
trnC-GCA gene + 28172 28242 71 Locate
petN gene + 28956 29045 90 Locate
psbM gene − 30075 30179 105 Locate
trnD-GUC gene − 30705 30778 74 Locate
trnY-GUA gene − 30892 30975 84 Locate
trnE-UUC gene − 31035 31107 73 Locate
trnT-GGU gene + 31683 31754 72 Locate
psbD gene + 33060 34121 1062 Locate
psbC gene + 34069 35490 1422 Locate
trnS-UGA gene − 35726 35817 92 Locate
psbZ gene + 36133 36321 189 Locate
trnG-GCC gene + 36597 36667 71 Locate
trnfM-CAU gene − 36813 36886 74 Locate
rps14 gene − 37041 37343 303 Locate
psaB gene − 37472 39676 2205 Locate
psaA gene − 39702 41954 2253 Locate
ycf3 gene − 42645 44567 1923 Locate
trnS-GGA gene + 45450 45536 87 Locate
rps4 gene − 45812 46417 606 Locate
trnT-UGU gene − 46760 46832 73 Locate
trnL-UAA gene + 47513 48072 560 Locate
trnF-GAA gene + 48373 48445 73 Locate
ndhJ gene − 49093 49569 477 Locate
ndhK gene − 49678 50355 678 Locate
ndhC gene − 50409 50771 363 Locate
trnV-UAC gene − 51757 52409 653 Locate
trnM-CAU gene + 52598 52670 73 Locate
atpE gene − 52864 53265 402 Locate
atpB gene − 53262 54758 1497 Locate
rbcL gene + 55510 56973 1464 Locate
accD gene + 57687 59165 1479 Locate
psaI gene + 59872 59982 111 Locate
ycf4 gene + 60416 60970 555 Locate
cemA gene + 61719 62318 600 Locate
petA gene + 62525 63487 963 Locate
psbJ gene − 64496 64618 123 Locate
psbL gene − 64752 64868 117 Locate
psbF gene − 64892 65011 120 Locate
psbE gene − 65026 65277 252 Locate
petL gene + 66154 66249 96 Locate
petG gene + 66425 66538 114 Locate
trnW-CCA gene − 66657 66730 74 Locate
trnP-UGG gene − 66900 66973 74 Locate
psaJ gene + 67182 67379 198 Locate
rpl33 gene + 67855 68055 201 Locate
rps18 gene + 68230 68535 306 Locate
rpl20 gene − 68770 69156 387 Locate
rps12 gene − 69941 70066 126 Locate
clpP gene − 70207 72136 1930 Locate
psbB gene + 72588 74114 1527 Locate
psbT gene + 74305 74412 108 Locate
psbN gene − 74473 74604 132 Locate
psbH gene + 74708 74929 222 Locate
petB gene + 75054 76422 1369 Locate
petD gene + 76605 77811 1207 Locate
rpoA gene − 78166 78966 801 Locate
rps11 gene − 79038 79454 417 Locate
rpl36 gene − 79556 79669 114 Locate
infA gene − 79764 79997 234 Locate
rps8 gene − 80120 80530 411 Locate
rpl14 gene − 80682 81050 369 Locate
rpl16 gene − 81177 82410 1234 Locate
rps3 gene − 82566 83228 663 Locate
rpl22 gene − 83230 83685 456 Locate
rps19 gene − 83745 84023 279 Locate
rpl2 gene − 84078 85559 1482 Locate
rpl23 gene − 85578 85859 282 Locate
trnI-CAU gene − 86019 86092 74 Locate
ycf2 gene + 86181 92981 6801 Locate
ycf15 gene + 93072 93320 249 Locate
trnL-CAA gene − 93580 93660 81 Locate
ndhB gene − 94203 96414 2212 Locate
rps7 gene − 96689 97156 468 Locate
rps12 gene − 97210 98000 791 Locate
trnV-GAC gene + 99572 99643 72 Locate
rrn16 gene + 99870 101360 1491 Locate
trnI-GAU gene + 101659 102679 1021 Locate
trnA-UGC gene + 102744 103634 891 Locate
rrn23 gene + 103797 106608 2812 Locate
rrn4.5 gene + 106707 106809 103 Locate
rrn5 gene + 107057 107177 121 Locate
trnR-ACG gene + 107412 107485 74 Locate
trnN-GUU gene − 108034 108105 72 Locate
ndhF gene − 109162 111423 2262 Locate
rpl32 gene + 111751 111927 177 Locate
trnL-UAG gene + 112376 112455 80 Locate
ccsA gene + 112557 113531 975 Locate
ndhD gene − 113788 115317 1530 Locate
psaC gene − 115418 115663 246 Locate
ndhE gene − 115919 116224 306 Locate
ndhG gene − 116441 116971 531 Locate
ndhI gene − 117338 117838 501 Locate
ndhA gene − 117924 120045 2122 Locate
ndhH gene − 120047 121258 1212 Locate
rps15 gene − 121325 121597 273 Locate
ycf1 gene − 121795 127431 5637 Locate
trnN-GUU gene + 127650 127721 72 Locate
trnR-ACG gene − 128270 128343 74 Locate
rrn5 gene − 128578 128698 121 Locate
rrn4.5 gene − 128946 129048 103 Locate
rrn23 gene − 129147 131958 2812 Locate
trnA-UGC gene − 132121 133011 891 Locate
trnI-GAU gene − 133076 134096 1021 Locate
ycf68 gene − 133648 133941 294 Locate
rrn16 gene − 134395 135885 1491 Locate
trnV-GAC gene − 136112 136183 72 Locate
rps12 gene + 137755 138545 791 Locate
rps7 gene + 138599 139066 468 Locate
ndhB gene + 139341 141552 2212 Locate
trnL-CAA gene + 142095 142175 81 Locate
ycf15 gene − 142435 142683 249 Locate
ycf2 gene − 142774 149574 6801 Locate
trnI-CAU gene + 149663 149736 74 Locate
rpl23 gene + 149896 150177 282 Locate
rpl2 gene + 150196 151677 1482 Locate
Status Available
Accession PZ130059.1
Length 151,777 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources