Scutellaria utriculata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059221.1 · 2–75 bp · −
psbA · PQ059221.1 · 393–1,451 bp · −
trnK-UUU · PQ059221.1 · 1,693–4,286 bp · −
matK · PQ059221.1 · 1,982–3,526 bp · −
rps16 · PQ059221.1 · 5,192–6,363 bp · −
trnQ-UUG · PQ059221.1 · 7,500–7,571 bp · −
trnS-GCU · PQ059221.1 · 8,689–8,776 bp · −
atpA · PQ059221.1 · 10,559–12,082 bp · −
atpF · PQ059221.1 · 12,166–13,394 bp · −
atpH · PQ059221.1 · 13,760–14,005 bp · −
atpI · PQ059221.1 · 14,999–15,742 bp · −
rps2 · PQ059221.1 · 16,090–16,800 bp · −
rpoC2 · PQ059221.1 · 17,018–21,208 bp · −
rpoC1 · PQ059221.1 · 21,363–24,181 bp · −
rpoB · PQ059221.1 · 24,208–27,420 bp · −
psbM · PQ059221.1 · 30,499–30,603 bp · −
trnD-GUC · PQ059221.1 · 31,135–31,208 bp · −
trnY-GUA · PQ059221.1 · 31,322–31,405 bp · −
trnE-UUC · PQ059221.1 · 31,465–31,537 bp · −
trnS-UGA · PQ059221.1 · 36,162–36,253 bp · −
trnfM-CAU · PQ059221.1 · 37,256–37,329 bp · −
rps14 · PQ059221.1 · 37,479–37,781 bp · −
psaB · PQ059221.1 · 37,914–40,118 bp · −
psaA · PQ059221.1 · 40,144–42,396 bp · −
ycf3 · PQ059221.1 · 43,097–45,020 bp · −
rps4 · PQ059221.1 · 46,264–46,869 bp · −
trnT-UGU · PQ059221.1 · 47,212–47,284 bp · −
ndhJ · PQ059221.1 · 49,546–50,022 bp · −
ndhK · PQ059221.1 · 50,127–50,804 bp · −
ndhC · PQ059221.1 · 50,857–51,219 bp · −
trnV-UAC · PQ059221.1 · 52,208–52,866 bp · −
atpE · PQ059221.1 · 53,328–53,729 bp · −
atpB · PQ059221.1 · 53,726–55,222 bp · −
psbJ · PQ059221.1 · 64,378–64,500 bp · −
psbL · PQ059221.1 · 64,634–64,855 bp · −
psbF · PQ059221.1 · 64,774–64,893 bp · −
psbE · PQ059221.1 · 64,908–65,159 bp · −
trnW-CCA · PQ059221.1 · 66,574–66,647 bp · −
trnP-UGG · PQ059221.1 · 66,817–66,890 bp · −
rpl20 · PQ059221.1 · 68,692–69,078 bp · −
rps12 · PQ059221.1 · 69,875–69,988 bp · −
rps12 · PQ059221.1 · 97,180–97,970 bp · −
clpP · PQ059221.1 · 70,130–72,068 bp · −
psbN · PQ059221.1 · 74,394–74,525 bp · −
rpoA · PQ059221.1 · 77,906–78,919 bp · −
rps11 · PQ059221.1 · 78,991–79,407 bp · −
rpl36 · PQ059221.1 · 79,509–79,622 bp · −
infA · PQ059221.1 · 79,718–79,951 bp · −
rps8 · PQ059221.1 · 80,074–80,484 bp · −
rpl14 · PQ059221.1 · 80,644–81,012 bp · −
rpl16 · PQ059221.1 · 81,139–82,369 bp · −
rps3 · PQ059221.1 · 82,524–83,186 bp · −
rpl22 · PQ059221.1 · 83,188–83,643 bp · −
rps19 · PQ059221.1 · 83,703–83,981 bp · −
rpl2 · PQ059221.1 · 84,037–85,519 bp · −
rpl23 · PQ059221.1 · 85,538–85,819 bp · −
trnI-CAU · PQ059221.1 · 85,979–86,052 bp · −
trnL-CAA · PQ059221.1 · 93,550–93,630 bp · −
ndhB · PQ059221.1 · 94,173–96,330 bp · −
rps7 · PQ059221.1 · 96,659–97,126 bp · −
trnN-GUU · PQ059221.1 · 108,008–108,079 bp · −
ndhF · PQ059221.1 · 109,156–111,396 bp · −
ndhD · PQ059221.1 · 113,896–115,398 bp · −
psaC · PQ059221.1 · 115,532–115,777 bp · −
ndhE · PQ059221.1 · 116,033–116,338 bp · −
ndhG · PQ059221.1 · 116,562–117,092 bp · −
ndhI · PQ059221.1 · 117,441–117,941 bp · −
ndhA · PQ059221.1 · 118,022–120,131 bp · −
ndhH · PQ059221.1 · 120,133–121,314 bp · −
rps15 · PQ059221.1 · 121,411–121,743 bp · −
ycf1 · PQ059221.1 · 121,952–127,627 bp · −
trnR-ACG · PQ059221.1 · 128,473–128,546 bp · −
rrn5 · PQ059221.1 · 128,781–128,901 bp · −
rrn4.5 · PQ059221.1 · 129,149–129,251 bp · −
rrn23 · PQ059221.1 · 129,350–132,161 bp · −
trnA-UGC · PQ059221.1 · 132,331–133,216 bp · −
trnI-GAU · PQ059221.1 · 133,281–134,299 bp · −
ycf68 · PQ059221.1 · 133,851–134,144 bp · −
rrn16 · PQ059221.1 · 134,598–136,088 bp · −
trnV-GAC · PQ059221.1 · 136,311–136,382 bp · −
ycf15 · PQ059221.1 · 142,636–142,884 bp · −
ycf2 · PQ059221.1 · 142,975–149,784 bp · −
psbK · PQ059221.1 · 7,896–8,081 bp · +
psbI · PQ059221.1 · 8,480–8,590 bp · +
trnG-UCC · PQ059221.1 · 9,471–10,225 bp · +
trnR-UCU · PQ059221.1 · 10,391–10,462 bp · +
trnC-GCA · PQ059221.1 · 28,597–28,667 bp · +
petN · PQ059221.1 · 29,403–29,492 bp · +
trnT-GGU · PQ059221.1 · 32,109–32,180 bp · +
psbD · PQ059221.1 · 33,497–34,558 bp · +
psbC · PQ059221.1 · 34,506–35,927 bp · +
psbZ · PQ059221.1 · 36,574–36,762 bp · +
trnG-GCC · PQ059221.1 · 37,035–37,105 bp · +
trnS-GGA · PQ059221.1 · 45,894–45,980 bp · +
trnL-UAA · PQ059221.1 · 47,952–48,518 bp · +
trnF-GAA · PQ059221.1 · 48,824–48,896 bp · +
trnM-CAU · PQ059221.1 · 53,047–53,119 bp · +
rbcL · PQ059221.1 · 55,970–57,433 bp · +
accD · PQ059221.1 · 58,148–59,638 bp · +
psaI · PQ059221.1 · 59,876–59,986 bp · +
ycf4 · PQ059221.1 · 60,420–60,974 bp · +
cemA · PQ059221.1 · 61,588–62,187 bp · +
petA · PQ059221.1 · 62,394–63,356 bp · +
petL · PQ059221.1 · 66,081–66,176 bp · +
petG · PQ059221.1 · 66,352–66,465 bp · +
psaJ · PQ059221.1 · 67,163–67,297 bp · +
rpl33 · PQ059221.1 · 67,771–67,971 bp · +
rps18 · PQ059221.1 · 68,146–68,451 bp · +
rps12 · PQ059221.1 · 137,955–138,745 bp · +
psbB · PQ059221.1 · 72,522–74,048 bp · +
psbT · PQ059221.1 · 74,226–74,333 bp · +
psbH · PQ059221.1 · 74,629–74,850 bp · +
petB · PQ059221.1 · 74,975–76,343 bp · +
petD · PQ059221.1 · 76,532–77,743 bp · +
ycf2 · PQ059221.1 · 86,141–92,950 bp · +
ycf15 · PQ059221.1 · 93,041–93,289 bp · +
trnV-GAC · PQ059221.1 · 99,543–99,614 bp · +
rrn16 · PQ059221.1 · 99,837–101,327 bp · +
trnI-GAU · PQ059221.1 · 101,626–102,644 bp · +
trnA-UGC · PQ059221.1 · 102,709–103,594 bp · +
rrn23 · PQ059221.1 · 103,764–106,575 bp · +
rrn4.5 · PQ059221.1 · 106,674–106,776 bp · +
rrn5 · PQ059221.1 · 107,024–107,144 bp · +
trnR-ACG · PQ059221.1 · 107,379–107,452 bp · +
rpl32 · PQ059221.1 · 111,910–112,086 bp · +
trnL-UAG · PQ059221.1 · 112,521–112,600 bp · +
ccsA · PQ059221.1 · 112,684–113,658 bp · +
trnN-GUU · PQ059221.1 · 127,846–127,917 bp · +
rps7 · PQ059221.1 · 138,799–139,266 bp · +
ndhB · PQ059221.1 · 139,595–141,752 bp · +
trnL-CAA · PQ059221.1 · 142,295–142,375 bp · +
trnI-CAU · PQ059221.1 · 149,873–149,946 bp · +
rpl23 · PQ059221.1 · 150,106–150,387 bp · +
rpl2 · PQ059221.1 · 150,406–151,888 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria utriculata
ANNOTATED PLASTOME
PQ059221.1
151,986 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37996 75993 113990 151986 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1693 4286 2594 Locate
matK gene − 1982 3526 1545 Locate
rps16 gene − 5192 6363 1172 Locate
trnQ-UUG gene − 7500 7571 72 Locate
psbK gene + 7896 8081 186 Locate
psbI gene + 8480 8590 111 Locate
trnS-GCU gene − 8689 8776 88 Locate
trnG-UCC gene + 9471 10225 755 Locate
trnR-UCU gene + 10391 10462 72 Locate
atpA gene − 10559 12082 1524 Locate
atpF gene − 12166 13394 1229 Locate
atpH gene − 13760 14005 246 Locate
atpI gene − 14999 15742 744 Locate
rps2 gene − 16090 16800 711 Locate
rpoC2 gene − 17018 21208 4191 Locate
rpoC1 gene − 21363 24181 2819 Locate
rpoB gene − 24208 27420 3213 Locate
trnC-GCA gene + 28597 28667 71 Locate
petN gene + 29403 29492 90 Locate
psbM gene − 30499 30603 105 Locate
trnD-GUC gene − 31135 31208 74 Locate
trnY-GUA gene − 31322 31405 84 Locate
trnE-UUC gene − 31465 31537 73 Locate
trnT-GGU gene + 32109 32180 72 Locate
psbD gene + 33497 34558 1062 Locate
psbC gene + 34506 35927 1422 Locate
trnS-UGA gene − 36162 36253 92 Locate
psbZ gene + 36574 36762 189 Locate
trnG-GCC gene + 37035 37105 71 Locate
trnfM-CAU gene − 37256 37329 74 Locate
rps14 gene − 37479 37781 303 Locate
psaB gene − 37914 40118 2205 Locate
psaA gene − 40144 42396 2253 Locate
ycf3 gene − 43097 45020 1924 Locate
trnS-GGA gene + 45894 45980 87 Locate
rps4 gene − 46264 46869 606 Locate
trnT-UGU gene − 47212 47284 73 Locate
trnL-UAA gene + 47952 48518 567 Locate
trnF-GAA gene + 48824 48896 73 Locate
ndhJ gene − 49546 50022 477 Locate
ndhK gene − 50127 50804 678 Locate
ndhC gene − 50857 51219 363 Locate
trnV-UAC gene − 52208 52866 659 Locate
trnM-CAU gene + 53047 53119 73 Locate
atpE gene − 53328 53729 402 Locate
atpB gene − 53726 55222 1497 Locate
rbcL gene + 55970 57433 1464 Locate
accD gene + 58148 59638 1491 Locate
psaI gene + 59876 59986 111 Locate
ycf4 gene + 60420 60974 555 Locate
cemA gene + 61588 62187 600 Locate
petA gene + 62394 63356 963 Locate
psbJ gene − 64378 64500 123 Locate
psbL gene − 64634 64855 222 Locate
psbF gene − 64774 64893 120 Locate
psbE gene − 64908 65159 252 Locate
petL gene + 66081 66176 96 Locate
petG gene + 66352 66465 114 Locate
trnW-CCA gene − 66574 66647 74 Locate
trnP-UGG gene − 66817 66890 74 Locate
psaJ gene + 67163 67297 135 Locate
rpl33 gene + 67771 67971 201 Locate
rps18 gene + 68146 68451 306 Locate
rpl20 gene − 68692 69078 387 Locate
rps12 gene − 69875 69988 114 Locate
clpP gene − 70130 72068 1939 Locate
psbB gene + 72522 74048 1527 Locate
psbT gene + 74226 74333 108 Locate
psbN gene − 74394 74525 132 Locate
psbH gene + 74629 74850 222 Locate
petB gene + 74975 76343 1369 Locate
petD gene + 76532 77743 1212 Locate
rpoA gene − 77906 78919 1014 Locate
rps11 gene − 78991 79407 417 Locate
rpl36 gene − 79509 79622 114 Locate
infA gene − 79718 79951 234 Locate
rps8 gene − 80074 80484 411 Locate
rpl14 gene − 80644 81012 369 Locate
rpl16 gene − 81139 82369 1231 Locate
rps3 gene − 82524 83186 663 Locate
rpl22 gene − 83188 83643 456 Locate
rps19 gene − 83703 83981 279 Locate
rpl2 gene − 84037 85519 1483 Locate
rpl23 gene − 85538 85819 282 Locate
trnI-CAU gene − 85979 86052 74 Locate
ycf2 gene + 86141 92950 6810 Locate
ycf15 gene + 93041 93289 249 Locate
trnL-CAA gene − 93550 93630 81 Locate
ndhB gene − 94173 96330 2158 Locate
rps7 gene − 96659 97126 468 Locate
rps12 gene − 97180 97970 791 Locate
trnV-GAC gene + 99543 99614 72 Locate
rrn16 gene + 99837 101327 1491 Locate
trnI-GAU gene + 101626 102644 1019 Locate
trnA-UGC gene + 102709 103594 886 Locate
rrn23 gene + 103764 106575 2812 Locate
rrn4.5 gene + 106674 106776 103 Locate
rrn5 gene + 107024 107144 121 Locate
trnR-ACG gene + 107379 107452 74 Locate
trnN-GUU gene − 108008 108079 72 Locate
ndhF gene − 109156 111396 2241 Locate
rpl32 gene + 111910 112086 177 Locate
trnL-UAG gene + 112521 112600 80 Locate
ccsA gene + 112684 113658 975 Locate
ndhD gene − 113896 115398 1503 Locate
psaC gene − 115532 115777 246 Locate
ndhE gene − 116033 116338 306 Locate
ndhG gene − 116562 117092 531 Locate
ndhI gene − 117441 117941 501 Locate
ndhA gene − 118022 120131 2110 Locate
ndhH gene − 120133 121314 1182 Locate
rps15 gene − 121411 121743 333 Locate
ycf1 gene − 121952 127627 5676 Locate
trnN-GUU gene + 127846 127917 72 Locate
trnR-ACG gene − 128473 128546 74 Locate
rrn5 gene − 128781 128901 121 Locate
rrn4.5 gene − 129149 129251 103 Locate
rrn23 gene − 129350 132161 2812 Locate
trnA-UGC gene − 132331 133216 886 Locate
trnI-GAU gene − 133281 134299 1019 Locate
ycf68 gene − 133851 134144 294 Locate
rrn16 gene − 134598 136088 1491 Locate
trnV-GAC gene − 136311 136382 72 Locate
rps12 gene + 137955 138745 791 Locate
rps7 gene + 138799 139266 468 Locate
ndhB gene + 139595 141752 2158 Locate
trnL-CAA gene + 142295 142375 81 Locate
ycf15 gene − 142636 142884 249 Locate
ycf2 gene − 142975 149784 6810 Locate
trnI-CAU gene + 149873 149946 74 Locate
rpl23 gene + 150106 150387 282 Locate
rpl2 gene + 150406 151888 1483 Locate
Status Available
Accession PQ059221.1
Length 151,986 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources