Scutellaria velutina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058248.1 · 5–78 bp · −
psbA · PQ058248.1 · 391–1,449 bp · −
trnK-UUU · PQ058248.1 · 1,690–4,283 bp · −
matK · PQ058248.1 · 1,979–3,523 bp · −
rps16 · PQ058248.1 · 5,192–6,358 bp · −
trnQ-UUG · PQ058248.1 · 7,470–7,541 bp · −
trnS-GCU · PQ058248.1 · 8,660–8,747 bp · −
atpA · PQ058248.1 · 10,532–12,055 bp · −
atpF · PQ058248.1 · 12,138–13,367 bp · −
atpH · PQ058248.1 · 13,740–13,985 bp · −
atpI · PQ058248.1 · 14,980–15,723 bp · −
rps2 · PQ058248.1 · 16,071–16,907 bp · −
rpoC2 · PQ058248.1 · 16,998–21,197 bp · −
rpoC1 · PQ058248.1 · 21,352–24,180 bp · −
rpoB · PQ058248.1 · 24,207–27,419 bp · −
psbM · PQ058248.1 · 30,457–30,570 bp · −
trnD-GUC · PQ058248.1 · 31,102–31,175 bp · −
trnY-GUA · PQ058248.1 · 31,289–31,372 bp · −
trnE-UUC · PQ058248.1 · 31,432–31,504 bp · −
trnS-UGA · PQ058248.1 · 36,138–36,229 bp · −
trnfM-CAU · PQ058248.1 · 37,225–37,298 bp · −
rps14 · PQ058248.1 · 37,448–37,750 bp · −
psaB · PQ058248.1 · 37,878–40,082 bp · −
psaA · PQ058248.1 · 40,108–42,360 bp · −
ycf3 · PQ058248.1 · 43,060–44,986 bp · −
rps4 · PQ058248.1 · 46,238–46,843 bp · −
trnT-UGU · PQ058248.1 · 47,183–47,255 bp · −
ndhJ · PQ058248.1 · 49,542–50,018 bp · −
ndhK · PQ058248.1 · 50,127–50,804 bp · −
ndhC · PQ058248.1 · 50,857–51,219 bp · −
trnV-UAC · PQ058248.1 · 52,208–52,866 bp · −
atpE · PQ058248.1 · 53,328–53,729 bp · −
atpB · PQ058248.1 · 53,726–55,222 bp · −
psbJ · PQ058248.1 · 64,435–64,557 bp · −
psbL · PQ058248.1 · 64,692–64,808 bp · −
psbF · PQ058248.1 · 64,832–64,951 bp · −
psbE · PQ058248.1 · 64,966–65,217 bp · −
trnW-CCA · PQ058248.1 · 66,622–66,695 bp · −
trnP-UGG · PQ058248.1 · 66,866–66,939 bp · −
rpl20 · PQ058248.1 · 68,742–69,128 bp · −
rps12 · PQ058248.1 · 69,923–70,036 bp · −
rps12 · PQ058248.1 · 97,253–98,043 bp · −
clpP · PQ058248.1 · 70,178–72,109 bp · −
psbN · PQ058248.1 · 74,458–74,589 bp · −
rpoA · PQ058248.1 · 78,182–78,985 bp · −
rps11 · PQ058248.1 · 79,057–79,473 bp · −
rpl36 · PQ058248.1 · 79,575–79,688 bp · −
infA · PQ058248.1 · 79,784–80,017 bp · −
rps8 · PQ058248.1 · 80,140–80,550 bp · −
rpl14 · PQ058248.1 · 80,712–81,080 bp · −
rpl16 · PQ058248.1 · 81,207–82,437 bp · −
rps3 · PQ058248.1 · 82,592–83,254 bp · −
rpl22 · PQ058248.1 · 83,256–83,711 bp · −
rps19 · PQ058248.1 · 83,771–84,049 bp · −
rpl2 · PQ058248.1 · 84,104–85,586 bp · −
rpl23 · PQ058248.1 · 85,605–85,886 bp · −
trnI-CAU · PQ058248.1 · 86,046–86,119 bp · −
trnL-CAA · PQ058248.1 · 93,623–93,703 bp · −
ndhB · PQ058248.1 · 94,246–96,457 bp · −
rps7 · PQ058248.1 · 96,732–97,199 bp · −
trnN-GUU · PQ058248.1 · 108,084–108,155 bp · −
ndhF · PQ058248.1 · 109,232–111,463 bp · −
ndhD · PQ058248.1 · 113,983–115,512 bp · −
psaC · PQ058248.1 · 115,624–115,869 bp · −
ndhE · PQ058248.1 · 116,125–116,430 bp · −
ndhG · PQ058248.1 · 116,655–117,185 bp · −
ndhI · PQ058248.1 · 117,534–118,034 bp · −
ndhA · PQ058248.1 · 118,115–120,223 bp · −
ndhH · PQ058248.1 · 120,225–121,436 bp · −
rps15 · PQ058248.1 · 121,503–121,835 bp · −
ycf1 · PQ058248.1 · 122,046–127,706 bp · −
trnR-ACG · PQ058248.1 · 128,552–128,625 bp · −
rrn5 · PQ058248.1 · 128,860–128,980 bp · −
rrn4.5 · PQ058248.1 · 129,228–129,330 bp · −
rrn23 · PQ058248.1 · 129,429–132,240 bp · −
trnA-UGC · PQ058248.1 · 132,410–133,296 bp · −
trnI-GAU · PQ058248.1 · 133,361–134,381 bp · −
ycf68 · PQ058248.1 · 133,933–134,226 bp · −
rrn16 · PQ058248.1 · 134,680–136,170 bp · −
trnV-GAC · PQ058248.1 · 136,393–136,464 bp · −
ycf15 · PQ058248.1 · 142,718–142,915 bp · −
ycf2 · PQ058248.1 · 143,057–149,872 bp · −
psbK · PQ058248.1 · 7,866–8,051 bp · +
psbI · PQ058248.1 · 8,444–8,554 bp · +
trnG-UCC · PQ058248.1 · 9,443–10,197 bp · +
trnR-UCU · PQ058248.1 · 10,364–10,435 bp · +
trnC-GCA · PQ058248.1 · 28,587–28,657 bp · +
petN · PQ058248.1 · 29,387–29,476 bp · +
trnT-GGU · PQ058248.1 · 32,083–32,154 bp · +
psbD · PQ058248.1 · 33,471–34,532 bp · +
psbC · PQ058248.1 · 34,480–35,901 bp · +
psbZ · PQ058248.1 · 36,549–36,737 bp · +
trnG-GCC · PQ058248.1 · 37,009–37,079 bp · +
trnS-GGA · PQ058248.1 · 45,868–45,954 bp · +
trnL-UAA · PQ058248.1 · 47,947–48,513 bp · +
trnF-GAA · PQ058248.1 · 48,819–48,891 bp · +
trnM-CAU · PQ058248.1 · 53,047–53,119 bp · +
rbcL · PQ058248.1 · 55,991–57,454 bp · +
accD · PQ058248.1 · 58,187–59,677 bp · +
psaI · PQ058248.1 · 59,914–60,024 bp · +
ycf4 · PQ058248.1 · 60,458–61,012 bp · +
cemA · PQ058248.1 · 61,639–62,238 bp · +
petA · PQ058248.1 · 62,445–63,407 bp · +
petL · PQ058248.1 · 66,129–66,224 bp · +
petG · PQ058248.1 · 66,400–66,513 bp · +
psaJ · PQ058248.1 · 67,212–67,346 bp · +
rpl33 · PQ058248.1 · 67,821–68,021 bp · +
rps18 · PQ058248.1 · 68,196–68,501 bp · +
rps12 · PQ058248.1 · 138,037–138,827 bp · +
psbB · PQ058248.1 · 72,584–74,110 bp · +
psbT · PQ058248.1 · 74,290–74,397 bp · +
psbH · PQ058248.1 · 74,693–74,914 bp · +
petB · PQ058248.1 · 75,039–76,407 bp · +
petD · PQ058248.1 · 76,596–77,807 bp · +
ycf2 · PQ058248.1 · 86,208–93,023 bp · +
ycf15 · PQ058248.1 · 93,165–93,362 bp · +
trnV-GAC · PQ058248.1 · 99,616–99,687 bp · +
rrn16 · PQ058248.1 · 99,910–101,400 bp · +
trnI-GAU · PQ058248.1 · 101,699–102,719 bp · +
trnA-UGC · PQ058248.1 · 102,784–103,670 bp · +
rrn23 · PQ058248.1 · 103,840–106,651 bp · +
rrn4.5 · PQ058248.1 · 106,750–106,852 bp · +
rrn5 · PQ058248.1 · 107,100–107,220 bp · +
trnR-ACG · PQ058248.1 · 107,455–107,528 bp · +
rpl32 · PQ058248.1 · 111,975–112,151 bp · +
trnL-UAG · PQ058248.1 · 112,587–112,666 bp · +
ccsA · PQ058248.1 · 112,770–113,744 bp · +
trnN-GUU · PQ058248.1 · 127,925–127,996 bp · +
rps7 · PQ058248.1 · 138,881–139,348 bp · +
ndhB · PQ058248.1 · 139,623–141,834 bp · +
trnL-CAA · PQ058248.1 · 142,377–142,457 bp · +
trnI-CAU · PQ058248.1 · 149,961–150,034 bp · +
rpl23 · PQ058248.1 · 150,194–150,475 bp · +
rpl2 · PQ058248.1 · 150,494–151,976 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria velutina
ANNOTATED PLASTOME
PQ058248.1
152,070 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38018 76035 114052 152070 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 78 74 Locate
psbA gene − 391 1449 1059 Locate
trnK-UUU gene − 1690 4283 2594 Locate
matK gene − 1979 3523 1545 Locate
rps16 gene − 5192 6358 1167 Locate
trnQ-UUG gene − 7470 7541 72 Locate
psbK gene + 7866 8051 186 Locate
psbI gene + 8444 8554 111 Locate
trnS-GCU gene − 8660 8747 88 Locate
trnG-UCC gene + 9443 10197 755 Locate
trnR-UCU gene + 10364 10435 72 Locate
atpA gene − 10532 12055 1524 Locate
atpF gene − 12138 13367 1230 Locate
atpH gene − 13740 13985 246 Locate
atpI gene − 14980 15723 744 Locate
rps2 gene − 16071 16907 837 Locate
rpoC2 gene − 16998 21197 4200 Locate
rpoC1 gene − 21352 24180 2829 Locate
rpoB gene − 24207 27419 3213 Locate
trnC-GCA gene + 28587 28657 71 Locate
petN gene + 29387 29476 90 Locate
psbM gene − 30457 30570 114 Locate
trnD-GUC gene − 31102 31175 74 Locate
trnY-GUA gene − 31289 31372 84 Locate
trnE-UUC gene − 31432 31504 73 Locate
trnT-GGU gene + 32083 32154 72 Locate
psbD gene + 33471 34532 1062 Locate
psbC gene + 34480 35901 1422 Locate
trnS-UGA gene − 36138 36229 92 Locate
psbZ gene + 36549 36737 189 Locate
trnG-GCC gene + 37009 37079 71 Locate
trnfM-CAU gene − 37225 37298 74 Locate
rps14 gene − 37448 37750 303 Locate
psaB gene − 37878 40082 2205 Locate
psaA gene − 40108 42360 2253 Locate
ycf3 gene − 43060 44986 1927 Locate
trnS-GGA gene + 45868 45954 87 Locate
rps4 gene − 46238 46843 606 Locate
trnT-UGU gene − 47183 47255 73 Locate
trnL-UAA gene + 47947 48513 567 Locate
trnF-GAA gene + 48819 48891 73 Locate
ndhJ gene − 49542 50018 477 Locate
ndhK gene − 50127 50804 678 Locate
ndhC gene − 50857 51219 363 Locate
trnV-UAC gene − 52208 52866 659 Locate
trnM-CAU gene + 53047 53119 73 Locate
atpE gene − 53328 53729 402 Locate
atpB gene − 53726 55222 1497 Locate
rbcL gene + 55991 57454 1464 Locate
accD gene + 58187 59677 1491 Locate
psaI gene + 59914 60024 111 Locate
ycf4 gene + 60458 61012 555 Locate
cemA gene + 61639 62238 600 Locate
petA gene + 62445 63407 963 Locate
psbJ gene − 64435 64557 123 Locate
psbL gene − 64692 64808 117 Locate
psbF gene − 64832 64951 120 Locate
psbE gene − 64966 65217 252 Locate
petL gene + 66129 66224 96 Locate
petG gene + 66400 66513 114 Locate
trnW-CCA gene − 66622 66695 74 Locate
trnP-UGG gene − 66866 66939 74 Locate
psaJ gene + 67212 67346 135 Locate
rpl33 gene + 67821 68021 201 Locate
rps18 gene + 68196 68501 306 Locate
rpl20 gene − 68742 69128 387 Locate
rps12 gene − 69923 70036 114 Locate
clpP gene − 70178 72109 1932 Locate
psbB gene + 72584 74110 1527 Locate
psbT gene + 74290 74397 108 Locate
psbN gene − 74458 74589 132 Locate
psbH gene + 74693 74914 222 Locate
petB gene + 75039 76407 1369 Locate
petD gene + 76596 77807 1212 Locate
rpoA gene − 78182 78985 804 Locate
rps11 gene − 79057 79473 417 Locate
rpl36 gene − 79575 79688 114 Locate
infA gene − 79784 80017 234 Locate
rps8 gene − 80140 80550 411 Locate
rpl14 gene − 80712 81080 369 Locate
rpl16 gene − 81207 82437 1231 Locate
rps3 gene − 82592 83254 663 Locate
rpl22 gene − 83256 83711 456 Locate
rps19 gene − 83771 84049 279 Locate
rpl2 gene − 84104 85586 1483 Locate
rpl23 gene − 85605 85886 282 Locate
trnI-CAU gene − 86046 86119 74 Locate
ycf2 gene + 86208 93023 6816 Locate
ycf15 gene + 93165 93362 198 Locate
trnL-CAA gene − 93623 93703 81 Locate
ndhB gene − 94246 96457 2212 Locate
rps7 gene − 96732 97199 468 Locate
rps12 gene − 97253 98043 791 Locate
trnV-GAC gene + 99616 99687 72 Locate
rrn16 gene + 99910 101400 1491 Locate
trnI-GAU gene + 101699 102719 1021 Locate
trnA-UGC gene + 102784 103670 887 Locate
rrn23 gene + 103840 106651 2812 Locate
rrn4.5 gene + 106750 106852 103 Locate
rrn5 gene + 107100 107220 121 Locate
trnR-ACG gene + 107455 107528 74 Locate
trnN-GUU gene − 108084 108155 72 Locate
ndhF gene − 109232 111463 2232 Locate
rpl32 gene + 111975 112151 177 Locate
trnL-UAG gene + 112587 112666 80 Locate
ccsA gene + 112770 113744 975 Locate
ndhD gene − 113983 115512 1530 Locate
psaC gene − 115624 115869 246 Locate
ndhE gene − 116125 116430 306 Locate
ndhG gene − 116655 117185 531 Locate
ndhI gene − 117534 118034 501 Locate
ndhA gene − 118115 120223 2109 Locate
ndhH gene − 120225 121436 1212 Locate
rps15 gene − 121503 121835 333 Locate
ycf1 gene − 122046 127706 5661 Locate
trnN-GUU gene + 127925 127996 72 Locate
trnR-ACG gene − 128552 128625 74 Locate
rrn5 gene − 128860 128980 121 Locate
rrn4.5 gene − 129228 129330 103 Locate
rrn23 gene − 129429 132240 2812 Locate
trnA-UGC gene − 132410 133296 887 Locate
trnI-GAU gene − 133361 134381 1021 Locate
ycf68 gene − 133933 134226 294 Locate
rrn16 gene − 134680 136170 1491 Locate
trnV-GAC gene − 136393 136464 72 Locate
rps12 gene + 138037 138827 791 Locate
rps7 gene + 138881 139348 468 Locate
ndhB gene + 139623 141834 2212 Locate
trnL-CAA gene + 142377 142457 81 Locate
ycf15 gene − 142718 142915 198 Locate
ycf2 gene − 143057 149872 6816 Locate
trnI-CAU gene + 149961 150034 74 Locate
rpl23 gene + 150194 150475 282 Locate
rpl2 gene + 150494 151976 1483 Locate
Status Available
Accession PQ058248.1
Length 152,070 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources