Scutellaria veronicifolia var. patentipilosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059350.1 · 3–76 bp · −
psbA · PQ059350.1 · 372–1,430 bp · −
trnK-UUU · PQ059350.1 · 1,664–4,252 bp · −
matK · PQ059350.1 · 1,959–3,494 bp · −
rps16 · PQ059350.1 · 5,134–6,302 bp · −
trnQ-UUG · PQ059350.1 · 7,322–7,393 bp · −
trnS-GCU · PQ059350.1 · 8,522–8,609 bp · −
atpA · PQ059350.1 · 10,390–11,913 bp · −
atpF · PQ059350.1 · 11,996–13,223 bp · −
atpH · PQ059350.1 · 13,579–13,824 bp · −
atpI · PQ059350.1 · 14,820–15,563 bp · −
rps2 · PQ059350.1 · 15,912–16,748 bp · −
rpoC2 · PQ059350.1 · 16,839–21,044 bp · −
rpoC1 · PQ059350.1 · 21,199–24,017 bp · −
rpoB · PQ059350.1 · 24,044–27,256 bp · −
psbM · PQ059350.1 · 30,297–30,401 bp · −
trnD-GUC · PQ059350.1 · 30,928–31,001 bp · −
trnY-GUA · PQ059350.1 · 31,120–31,203 bp · −
trnE-UUC · PQ059350.1 · 31,263–31,335 bp · −
trnS-UGA · PQ059350.1 · 35,955–36,046 bp · −
trnfM-CAU · PQ059350.1 · 37,042–37,115 bp · −
rps14 · PQ059350.1 · 37,265–37,567 bp · −
psaB · PQ059350.1 · 37,695–39,899 bp · −
psaA · PQ059350.1 · 39,925–42,177 bp · −
ycf3 · PQ059350.1 · 42,814–44,736 bp · −
rps4 · PQ059350.1 · 45,993–46,598 bp · −
trnT-UGU · PQ059350.1 · 46,940–47,012 bp · −
ndhJ · PQ059350.1 · 49,286–49,762 bp · −
ndhK · PQ059350.1 · 49,870–50,547 bp · −
ndhC · PQ059350.1 · 50,600–50,962 bp · −
trnV-UAC · PQ059350.1 · 51,818–52,470 bp · −
atpE · PQ059350.1 · 52,945–53,346 bp · −
atpB · PQ059350.1 · 53,343–54,830 bp · −
psbJ · PQ059350.1 · 64,449–64,571 bp · −
psbL · PQ059350.1 · 64,705–64,821 bp · −
psbF · PQ059350.1 · 64,845–64,964 bp · −
psbE · PQ059350.1 · 64,979–65,230 bp · −
trnW-CCA · PQ059350.1 · 66,641–66,714 bp · −
trnP-UGG · PQ059350.1 · 66,884–66,957 bp · −
rpl20 · PQ059350.1 · 68,757–69,143 bp · −
rps12 · PQ059350.1 · 69,923–70,048 bp · −
rps12 · PQ059350.1 · 97,252–98,042 bp · −
clpP · PQ059350.1 · 70,191–72,123 bp · −
psbN · PQ059350.1 · 74,472–74,603 bp · −
rpoA · PQ059350.1 · 78,185–78,985 bp · −
rps11 · PQ059350.1 · 79,057–79,473 bp · −
rpl36 · PQ059350.1 · 79,575–79,688 bp · −
infA · PQ059350.1 · 79,784–80,017 bp · −
rps8 · PQ059350.1 · 80,137–80,547 bp · −
rpl14 · PQ059350.1 · 80,719–81,087 bp · −
rpl16 · PQ059350.1 · 81,214–82,447 bp · −
rps3 · PQ059350.1 · 82,602–83,264 bp · −
rpl22 · PQ059350.1 · 83,266–83,721 bp · −
rps19 · PQ059350.1 · 83,781–84,059 bp · −
rpl2 · PQ059350.1 · 84,114–85,596 bp · −
rpl23 · PQ059350.1 · 85,615–85,896 bp · −
trnI-CAU · PQ059350.1 · 86,056–86,129 bp · −
trnL-CAA · PQ059350.1 · 93,622–93,702 bp · −
ndhB · PQ059350.1 · 94,245–96,402 bp · −
rps7 · PQ059350.1 · 96,731–97,198 bp · −
trnN-GUU · PQ059350.1 · 108,081–108,152 bp · −
ndhF · PQ059350.1 · 109,229–111,469 bp · −
ndhD · PQ059350.1 · 113,981–115,504 bp · −
psaC · PQ059350.1 · 115,603–115,848 bp · −
ndhE · PQ059350.1 · 116,105–116,410 bp · −
ndhG · PQ059350.1 · 116,641–117,171 bp · −
ndhI · PQ059350.1 · 117,540–118,040 bp · −
ndhA · PQ059350.1 · 118,121–120,219 bp · −
ndhH · PQ059350.1 · 120,221–121,432 bp · −
rps15 · PQ059350.1 · 121,505–121,837 bp · −
ycf1 · PQ059350.1 · 122,040–127,688 bp · −
trnR-ACG · PQ059350.1 · 128,525–128,598 bp · −
rrn5 · PQ059350.1 · 128,833–128,953 bp · −
rrn4.5 · PQ059350.1 · 129,201–129,303 bp · −
rrn23 · PQ059350.1 · 129,402–132,214 bp · −
trnA-UGC · PQ059350.1 · 132,384–133,266 bp · −
trnI-GAU · PQ059350.1 · 133,331–134,351 bp · −
ycf68 · PQ059350.1 · 133,957–134,196 bp · −
rrn16 · PQ059350.1 · 134,650–136,140 bp · −
trnV-GAC · PQ059350.1 · 136,368–136,439 bp · −
ycf15 · PQ059350.1 · 142,693–142,941 bp · −
ycf2 · PQ059350.1 · 143,032–149,841 bp · −
psbK · PQ059350.1 · 7,718–7,903 bp · +
psbI · PQ059350.1 · 8,294–8,398 bp · +
trnG-UCC · PQ059350.1 · 9,291–10,051 bp · +
trnR-UCU · PQ059350.1 · 10,222–10,293 bp · +
trnC-GCA · PQ059350.1 · 28,427–28,497 bp · +
petN · PQ059350.1 · 29,209–29,298 bp · +
trnT-GGU · PQ059350.1 · 31,911–31,982 bp · +
psbD · PQ059350.1 · 33,289–34,350 bp · +
psbC · PQ059350.1 · 34,298–35,719 bp · +
psbZ · PQ059350.1 · 36,358–36,546 bp · +
trnG-GCC · PQ059350.1 · 36,818–36,888 bp · +
trnS-GGA · PQ059350.1 · 45,621–45,707 bp · +
trnL-UAA · PQ059350.1 · 47,698–48,258 bp · +
trnF-GAA · PQ059350.1 · 48,565–48,637 bp · +
trnM-CAU · PQ059350.1 · 52,651–52,723 bp · +
rbcL · PQ059350.1 · 55,580–57,043 bp · +
accD · PQ059350.1 · 57,770–59,236 bp · +
psaI · PQ059350.1 · 59,810–59,920 bp · +
ycf4 · PQ059350.1 · 60,354–60,908 bp · +
cemA · PQ059350.1 · 61,646–62,245 bp · +
petA · PQ059350.1 · 62,452–63,414 bp · +
petL · PQ059350.1 · 66,139–66,234 bp · +
petG · PQ059350.1 · 66,409–66,522 bp · +
psaJ · PQ059350.1 · 67,230–67,364 bp · +
rpl33 · PQ059350.1 · 67,838–68,038 bp · +
rps18 · PQ059350.1 · 68,213–68,518 bp · +
rps12 · PQ059350.1 · 138,017–138,807 bp · +
psbB · PQ059350.1 · 72,579–74,105 bp · +
psbT · PQ059350.1 · 74,297–74,398 bp · +
psbH · PQ059350.1 · 74,707–74,928 bp · +
petB · PQ059350.1 · 75,053–76,420 bp · +
petD · PQ059350.1 · 76,609–77,810 bp · +
ycf2 · PQ059350.1 · 86,218–93,027 bp · +
ycf15 · PQ059350.1 · 93,118–93,366 bp · +
trnV-GAC · PQ059350.1 · 99,620–99,691 bp · +
rrn16 · PQ059350.1 · 99,919–101,409 bp · +
trnI-GAU · PQ059350.1 · 101,708–102,728 bp · +
trnA-UGC · PQ059350.1 · 102,793–103,675 bp · +
rrn23 · PQ059350.1 · 103,845–106,657 bp · +
rrn4.5 · PQ059350.1 · 106,756–106,858 bp · +
rrn5 · PQ059350.1 · 107,106–107,226 bp · +
trnR-ACG · PQ059350.1 · 107,461–107,534 bp · +
rpl32 · PQ059350.1 · 111,989–112,165 bp · +
trnL-UAG · PQ059350.1 · 112,611–112,690 bp · +
ccsA · PQ059350.1 · 112,774–113,748 bp · +
trnN-GUU · PQ059350.1 · 127,907–127,978 bp · +
rps7 · PQ059350.1 · 138,861–139,328 bp · +
ndhB · PQ059350.1 · 139,657–141,814 bp · +
trnL-CAA · PQ059350.1 · 142,357–142,437 bp · +
trnI-CAU · PQ059350.1 · 149,930–150,003 bp · +
rpl23 · PQ059350.1 · 150,163–150,444 bp · +
rpl2 · PQ059350.1 · 150,463–151,945 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria veronicifolia var. patentipilosa
ANNOTATED PLASTOME
PQ059350.1
152,040 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38010 76020 114030 152040 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 372 1430 1059 Locate
trnK-UUU gene − 1664 4252 2589 Locate
matK gene − 1959 3494 1536 Locate
rps16 gene − 5134 6302 1169 Locate
trnQ-UUG gene − 7322 7393 72 Locate
psbK gene + 7718 7903 186 Locate
psbI gene + 8294 8398 105 Locate
trnS-GCU gene − 8522 8609 88 Locate
trnG-UCC gene + 9291 10051 761 Locate
trnR-UCU gene + 10222 10293 72 Locate
atpA gene − 10390 11913 1524 Locate
atpF gene − 11996 13223 1228 Locate
atpH gene − 13579 13824 246 Locate
atpI gene − 14820 15563 744 Locate
rps2 gene − 15912 16748 837 Locate
rpoC2 gene − 16839 21044 4206 Locate
rpoC1 gene − 21199 24017 2819 Locate
rpoB gene − 24044 27256 3213 Locate
trnC-GCA gene + 28427 28497 71 Locate
petN gene + 29209 29298 90 Locate
psbM gene − 30297 30401 105 Locate
trnD-GUC gene − 30928 31001 74 Locate
trnY-GUA gene − 31120 31203 84 Locate
trnE-UUC gene − 31263 31335 73 Locate
trnT-GGU gene + 31911 31982 72 Locate
psbD gene + 33289 34350 1062 Locate
psbC gene + 34298 35719 1422 Locate
trnS-UGA gene − 35955 36046 92 Locate
psbZ gene + 36358 36546 189 Locate
trnG-GCC gene + 36818 36888 71 Locate
trnfM-CAU gene − 37042 37115 74 Locate
rps14 gene − 37265 37567 303 Locate
psaB gene − 37695 39899 2205 Locate
psaA gene − 39925 42177 2253 Locate
ycf3 gene − 42814 44736 1923 Locate
trnS-GGA gene + 45621 45707 87 Locate
rps4 gene − 45993 46598 606 Locate
trnT-UGU gene − 46940 47012 73 Locate
trnL-UAA gene + 47698 48258 561 Locate
trnF-GAA gene + 48565 48637 73 Locate
ndhJ gene − 49286 49762 477 Locate
ndhK gene − 49870 50547 678 Locate
ndhC gene − 50600 50962 363 Locate
trnV-UAC gene − 51818 52470 653 Locate
trnM-CAU gene + 52651 52723 73 Locate
atpE gene − 52945 53346 402 Locate
atpB gene − 53343 54830 1488 Locate
rbcL gene + 55580 57043 1464 Locate
accD gene + 57770 59236 1467 Locate
psaI gene + 59810 59920 111 Locate
ycf4 gene + 60354 60908 555 Locate
cemA gene + 61646 62245 600 Locate
petA gene + 62452 63414 963 Locate
psbJ gene − 64449 64571 123 Locate
psbL gene − 64705 64821 117 Locate
psbF gene − 64845 64964 120 Locate
psbE gene − 64979 65230 252 Locate
petL gene + 66139 66234 96 Locate
petG gene + 66409 66522 114 Locate
trnW-CCA gene − 66641 66714 74 Locate
trnP-UGG gene − 66884 66957 74 Locate
psaJ gene + 67230 67364 135 Locate
rpl33 gene + 67838 68038 201 Locate
rps18 gene + 68213 68518 306 Locate
rpl20 gene − 68757 69143 387 Locate
rps12 gene − 69923 70048 126 Locate
clpP gene − 70191 72123 1933 Locate
psbB gene + 72579 74105 1527 Locate
psbT gene + 74297 74398 102 Locate
psbN gene − 74472 74603 132 Locate
psbH gene + 74707 74928 222 Locate
petB gene + 75053 76420 1368 Locate
petD gene + 76609 77810 1202 Locate
rpoA gene − 78185 78985 801 Locate
rps11 gene − 79057 79473 417 Locate
rpl36 gene − 79575 79688 114 Locate
infA gene − 79784 80017 234 Locate
rps8 gene − 80137 80547 411 Locate
rpl14 gene − 80719 81087 369 Locate
rpl16 gene − 81214 82447 1234 Locate
rps3 gene − 82602 83264 663 Locate
rpl22 gene − 83266 83721 456 Locate
rps19 gene − 83781 84059 279 Locate
rpl2 gene − 84114 85596 1483 Locate
rpl23 gene − 85615 85896 282 Locate
trnI-CAU gene − 86056 86129 74 Locate
ycf2 gene + 86218 93027 6810 Locate
ycf15 gene + 93118 93366 249 Locate
trnL-CAA gene − 93622 93702 81 Locate
ndhB gene − 94245 96402 2158 Locate
rps7 gene − 96731 97198 468 Locate
rps12 gene − 97252 98042 791 Locate
trnV-GAC gene + 99620 99691 72 Locate
rrn16 gene + 99919 101409 1491 Locate
trnI-GAU gene + 101708 102728 1021 Locate
trnA-UGC gene + 102793 103675 883 Locate
rrn23 gene + 103845 106657 2813 Locate
rrn4.5 gene + 106756 106858 103 Locate
rrn5 gene + 107106 107226 121 Locate
trnR-ACG gene + 107461 107534 74 Locate
trnN-GUU gene − 108081 108152 72 Locate
ndhF gene − 109229 111469 2241 Locate
rpl32 gene + 111989 112165 177 Locate
trnL-UAG gene + 112611 112690 80 Locate
ccsA gene + 112774 113748 975 Locate
ndhD gene − 113981 115504 1524 Locate
psaC gene − 115603 115848 246 Locate
ndhE gene − 116105 116410 306 Locate
ndhG gene − 116641 117171 531 Locate
ndhI gene − 117540 118040 501 Locate
ndhA gene − 118121 120219 2099 Locate
ndhH gene − 120221 121432 1212 Locate
rps15 gene − 121505 121837 333 Locate
ycf1 gene − 122040 127688 5649 Locate
trnN-GUU gene + 127907 127978 72 Locate
trnR-ACG gene − 128525 128598 74 Locate
rrn5 gene − 128833 128953 121 Locate
rrn4.5 gene − 129201 129303 103 Locate
rrn23 gene − 129402 132214 2813 Locate
trnA-UGC gene − 132384 133266 883 Locate
trnI-GAU gene − 133331 134351 1021 Locate
ycf68 gene − 133957 134196 240 Locate
rrn16 gene − 134650 136140 1491 Locate
trnV-GAC gene − 136368 136439 72 Locate
rps12 gene + 138017 138807 791 Locate
rps7 gene + 138861 139328 468 Locate
ndhB gene + 139657 141814 2158 Locate
trnL-CAA gene + 142357 142437 81 Locate
ycf15 gene − 142693 142941 249 Locate
ycf2 gene − 143032 149841 6810 Locate
trnI-CAU gene + 149930 150003 74 Locate
rpl23 gene + 150163 150444 282 Locate
rpl2 gene + 150463 151945 1483 Locate
Status Available
Accession PQ059350.1
Length 152,040 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources