Scutellaria villosissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130061.1 · 4–77 bp · −
psbA · PZ130061.1 · 378–1,436 bp · −
trnK-UUU · PZ130061.1 · 1,677–4,270 bp · −
matK · PZ130061.1 · 1,966–3,510 bp · −
rps16 · PZ130061.1 · 5,186–6,355 bp · −
trnQ-UUG · PZ130061.1 · 7,467–7,538 bp · −
trnS-GCU · PZ130061.1 · 8,656–8,743 bp · −
atpA · PZ130061.1 · 10,531–12,054 bp · −
atpF · PZ130061.1 · 12,138–13,366 bp · −
atpH · PZ130061.1 · 13,738–13,983 bp · −
atpI · PZ130061.1 · 14,977–15,720 bp · −
rps2 · PZ130061.1 · 16,068–16,904 bp · −
rpoC2 · PZ130061.1 · 16,995–21,194 bp · −
rpoC1 · PZ130061.1 · 21,349–24,176 bp · −
rpoB · PZ130061.1 · 24,203–27,415 bp · −
psbM · PZ130061.1 · 30,445–30,558 bp · −
trnD-GUC · PZ130061.1 · 31,090–31,163 bp · −
trnY-GUA · PZ130061.1 · 31,277–31,360 bp · −
trnE-UUC · PZ130061.1 · 31,420–31,492 bp · −
trnS-UGA · PZ130061.1 · 36,105–36,196 bp · −
trnfM-CAU · PZ130061.1 · 37,191–37,264 bp · −
rps14 · PZ130061.1 · 37,414–37,716 bp · −
psaB · PZ130061.1 · 37,844–40,048 bp · −
psaA · PZ130061.1 · 40,074–42,326 bp · −
ycf3 · PZ130061.1 · 43,024–44,945 bp · −
rps4 · PZ130061.1 · 46,200–46,805 bp · −
trnT-UGU · PZ130061.1 · 47,132–47,204 bp · −
ndhJ · PZ130061.1 · 49,476–49,952 bp · −
ndhK · PZ130061.1 · 50,061–50,738 bp · −
ndhC · PZ130061.1 · 50,791–51,153 bp · −
trnV-UAC · PZ130061.1 · 52,143–52,801 bp · −
atpE · PZ130061.1 · 53,263–53,664 bp · −
atpB · PZ130061.1 · 53,661–55,157 bp · −
psbJ · PZ130061.1 · 64,347–64,469 bp · −
psbL · PZ130061.1 · 64,603–64,719 bp · −
psbF · PZ130061.1 · 64,743–64,862 bp · −
psbE · PZ130061.1 · 64,877–65,128 bp · −
trnW-CCA · PZ130061.1 · 66,533–66,606 bp · −
trnP-UGG · PZ130061.1 · 66,777–66,850 bp · −
rpl20 · PZ130061.1 · 68,654–69,040 bp · −
rps12 · PZ130061.1 · 69,836–69,949 bp · −
rps12 · PZ130061.1 · 97,130–97,920 bp · −
clpP · PZ130061.1 · 70,091–72,021 bp · −
psbN · PZ130061.1 · 74,350–74,481 bp · −
rpoA · PZ130061.1 · 78,064–78,867 bp · −
rps11 · PZ130061.1 · 78,939–79,355 bp · −
rpl36 · PZ130061.1 · 79,457–79,570 bp · −
infA · PZ130061.1 · 79,666–79,899 bp · −
rps8 · PZ130061.1 · 80,022–80,432 bp · −
rpl14 · PZ130061.1 · 80,592–80,960 bp · −
rpl16 · PZ130061.1 · 81,087–82,313 bp · −
rps3 · PZ130061.1 · 82,468–83,130 bp · −
rpl22 · PZ130061.1 · 83,157–83,588 bp · −
rps19 · PZ130061.1 · 83,648–83,926 bp · −
rpl2 · PZ130061.1 · 83,981–85,463 bp · −
rpl23 · PZ130061.1 · 85,482–85,763 bp · −
trnI-CAU · PZ130061.1 · 85,923–85,996 bp · −
trnL-CAA · PZ130061.1 · 93,500–93,580 bp · −
ndhB · PZ130061.1 · 94,123–96,334 bp · −
rps7 · PZ130061.1 · 96,609–97,076 bp · −
trnN-GUU · PZ130061.1 · 107,960–108,031 bp · −
ndhF · PZ130061.1 · 109,108–111,348 bp · −
ndhD · PZ130061.1 · 113,865–115,394 bp · −
psaC · PZ130061.1 · 115,499–115,744 bp · −
ndhE · PZ130061.1 · 116,000–116,305 bp · −
ndhG · PZ130061.1 · 116,530–117,060 bp · −
ndhI · PZ130061.1 · 117,403–117,903 bp · −
ndhA · PZ130061.1 · 117,984–120,096 bp · −
ndhH · PZ130061.1 · 120,098–121,309 bp · −
rps15 · PZ130061.1 · 121,376–121,708 bp · −
ycf1 · PZ130061.1 · 121,919–127,573 bp · −
trnR-ACG · PZ130061.1 · 128,419–128,492 bp · −
rrn5 · PZ130061.1 · 128,727–128,847 bp · −
rrn4.5 · PZ130061.1 · 129,095–129,197 bp · −
rrn23 · PZ130061.1 · 129,296–132,107 bp · −
trnA-UGC · PZ130061.1 · 132,277–133,162 bp · −
trnI-GAU · PZ130061.1 · 133,227–134,247 bp · −
ycf68 · PZ130061.1 · 133,799–134,092 bp · −
rrn16 · PZ130061.1 · 134,546–136,036 bp · −
trnV-GAC · PZ130061.1 · 136,259–136,330 bp · −
ycf15 · PZ130061.1 · 142,584–142,781 bp · −
ycf2 · PZ130061.1 · 142,923–149,738 bp · −
psbK · PZ130061.1 · 7,863–8,048 bp · +
psbI · PZ130061.1 · 8,440–8,550 bp · +
trnG-UCC · PZ130061.1 · 9,443–10,196 bp · +
trnR-UCU · PZ130061.1 · 10,363–10,434 bp · +
trnC-GCA · PZ130061.1 · 28,583–28,653 bp · +
petN · PZ130061.1 · 29,375–29,464 bp · +
trnT-GGU · PZ130061.1 · 32,052–32,123 bp · +
psbD · PZ130061.1 · 33,438–34,499 bp · +
psbC · PZ130061.1 · 34,447–35,868 bp · +
psbZ · PZ130061.1 · 36,516–36,704 bp · +
trnG-GCC · PZ130061.1 · 36,976–37,046 bp · +
trnS-GGA · PZ130061.1 · 45,829–45,915 bp · +
trnL-UAA · PZ130061.1 · 47,881–48,447 bp · +
trnF-GAA · PZ130061.1 · 48,753–48,825 bp · +
trnM-CAU · PZ130061.1 · 52,982–53,054 bp · +
rbcL · PZ130061.1 · 55,904–57,367 bp · +
accD · PZ130061.1 · 58,100–59,590 bp · +
psaI · PZ130061.1 · 59,828–59,938 bp · +
ycf4 · PZ130061.1 · 60,372–60,926 bp · +
cemA · PZ130061.1 · 61,550–62,149 bp · +
petA · PZ130061.1 · 62,356–63,318 bp · +
petL · PZ130061.1 · 66,040–66,135 bp · +
petG · PZ130061.1 · 66,311–66,424 bp · +
psaJ · PZ130061.1 · 67,123–67,257 bp · +
rpl33 · PZ130061.1 · 67,732–67,932 bp · +
rps18 · PZ130061.1 · 68,107–68,412 bp · +
rps12 · PZ130061.1 · 137,903–138,693 bp · +
psbB · PZ130061.1 · 72,475–74,001 bp · +
psbT · PZ130061.1 · 74,182–74,289 bp · +
psbH · PZ130061.1 · 74,585–74,806 bp · +
petB · PZ130061.1 · 74,931–76,299 bp · +
petD · PZ130061.1 · 76,488–77,689 bp · +
ycf2 · PZ130061.1 · 86,085–92,900 bp · +
ycf15 · PZ130061.1 · 93,042–93,239 bp · +
trnV-GAC · PZ130061.1 · 99,493–99,564 bp · +
rrn16 · PZ130061.1 · 99,787–101,277 bp · +
trnI-GAU · PZ130061.1 · 101,576–102,596 bp · +
trnA-UGC · PZ130061.1 · 102,661–103,546 bp · +
rrn23 · PZ130061.1 · 103,716–106,527 bp · +
rrn4.5 · PZ130061.1 · 106,626–106,728 bp · +
rrn5 · PZ130061.1 · 106,976–107,096 bp · +
trnR-ACG · PZ130061.1 · 107,331–107,404 bp · +
rpl32 · PZ130061.1 · 111,865–112,041 bp · +
trnL-UAG · PZ130061.1 · 112,470–112,549 bp · +
ccsA · PZ130061.1 · 112,651–113,625 bp · +
trnN-GUU · PZ130061.1 · 127,792–127,863 bp · +
rps7 · PZ130061.1 · 138,747–139,214 bp · +
ndhB · PZ130061.1 · 139,489–141,700 bp · +
trnL-CAA · PZ130061.1 · 142,243–142,323 bp · +
trnI-CAU · PZ130061.1 · 149,827–149,900 bp · +
rpl23 · PZ130061.1 · 150,060–150,341 bp · +
rpl2 · PZ130061.1 · 150,360–151,842 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria villosissima
ANNOTATED PLASTOME
PZ130061.1
151,937 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37984 75968 113953 151937 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1677 4270 2594 Locate
matK gene − 1966 3510 1545 Locate
rps16 gene − 5186 6355 1170 Locate
trnQ-UUG gene − 7467 7538 72 Locate
psbK gene + 7863 8048 186 Locate
psbI gene + 8440 8550 111 Locate
trnS-GCU gene − 8656 8743 88 Locate
trnG-UCC gene + 9443 10196 754 Locate
trnR-UCU gene + 10363 10434 72 Locate
atpA gene − 10531 12054 1524 Locate
atpF gene − 12138 13366 1229 Locate
atpH gene − 13738 13983 246 Locate
atpI gene − 14977 15720 744 Locate
rps2 gene − 16068 16904 837 Locate
rpoC2 gene − 16995 21194 4200 Locate
rpoC1 gene − 21349 24176 2828 Locate
rpoB gene − 24203 27415 3213 Locate
trnC-GCA gene + 28583 28653 71 Locate
petN gene + 29375 29464 90 Locate
psbM gene − 30445 30558 114 Locate
trnD-GUC gene − 31090 31163 74 Locate
trnY-GUA gene − 31277 31360 84 Locate
trnE-UUC gene − 31420 31492 73 Locate
trnT-GGU gene + 32052 32123 72 Locate
psbD gene + 33438 34499 1062 Locate
psbC gene + 34447 35868 1422 Locate
trnS-UGA gene − 36105 36196 92 Locate
psbZ gene + 36516 36704 189 Locate
trnG-GCC gene + 36976 37046 71 Locate
trnfM-CAU gene − 37191 37264 74 Locate
rps14 gene − 37414 37716 303 Locate
psaB gene − 37844 40048 2205 Locate
psaA gene − 40074 42326 2253 Locate
ycf3 gene − 43024 44945 1922 Locate
trnS-GGA gene + 45829 45915 87 Locate
rps4 gene − 46200 46805 606 Locate
trnT-UGU gene − 47132 47204 73 Locate
trnL-UAA gene + 47881 48447 567 Locate
trnF-GAA gene + 48753 48825 73 Locate
ndhJ gene − 49476 49952 477 Locate
ndhK gene − 50061 50738 678 Locate
ndhC gene − 50791 51153 363 Locate
trnV-UAC gene − 52143 52801 659 Locate
trnM-CAU gene + 52982 53054 73 Locate
atpE gene − 53263 53664 402 Locate
atpB gene − 53661 55157 1497 Locate
rbcL gene + 55904 57367 1464 Locate
accD gene + 58100 59590 1491 Locate
psaI gene + 59828 59938 111 Locate
ycf4 gene + 60372 60926 555 Locate
cemA gene + 61550 62149 600 Locate
petA gene + 62356 63318 963 Locate
psbJ gene − 64347 64469 123 Locate
psbL gene − 64603 64719 117 Locate
psbF gene − 64743 64862 120 Locate
psbE gene − 64877 65128 252 Locate
petL gene + 66040 66135 96 Locate
petG gene + 66311 66424 114 Locate
trnW-CCA gene − 66533 66606 74 Locate
trnP-UGG gene − 66777 66850 74 Locate
psaJ gene + 67123 67257 135 Locate
rpl33 gene + 67732 67932 201 Locate
rps18 gene + 68107 68412 306 Locate
rpl20 gene − 68654 69040 387 Locate
rps12 gene − 69836 69949 114 Locate
clpP gene − 70091 72021 1931 Locate
psbB gene + 72475 74001 1527 Locate
psbT gene + 74182 74289 108 Locate
psbN gene − 74350 74481 132 Locate
psbH gene + 74585 74806 222 Locate
petB gene + 74931 76299 1369 Locate
petD gene + 76488 77689 1202 Locate
rpoA gene − 78064 78867 804 Locate
rps11 gene − 78939 79355 417 Locate
rpl36 gene − 79457 79570 114 Locate
infA gene − 79666 79899 234 Locate
rps8 gene − 80022 80432 411 Locate
rpl14 gene − 80592 80960 369 Locate
rpl16 gene − 81087 82313 1227 Locate
rps3 gene − 82468 83130 663 Locate
rpl22 gene − 83157 83588 432 Locate
rps19 gene − 83648 83926 279 Locate
rpl2 gene − 83981 85463 1483 Locate
rpl23 gene − 85482 85763 282 Locate
trnI-CAU gene − 85923 85996 74 Locate
ycf2 gene + 86085 92900 6816 Locate
ycf15 gene + 93042 93239 198 Locate
trnL-CAA gene − 93500 93580 81 Locate
ndhB gene − 94123 96334 2212 Locate
rps7 gene − 96609 97076 468 Locate
rps12 gene − 97130 97920 791 Locate
trnV-GAC gene + 99493 99564 72 Locate
rrn16 gene + 99787 101277 1491 Locate
trnI-GAU gene + 101576 102596 1021 Locate
trnA-UGC gene + 102661 103546 886 Locate
rrn23 gene + 103716 106527 2812 Locate
rrn4.5 gene + 106626 106728 103 Locate
rrn5 gene + 106976 107096 121 Locate
trnR-ACG gene + 107331 107404 74 Locate
trnN-GUU gene − 107960 108031 72 Locate
ndhF gene − 109108 111348 2241 Locate
rpl32 gene + 111865 112041 177 Locate
trnL-UAG gene + 112470 112549 80 Locate
ccsA gene + 112651 113625 975 Locate
ndhD gene − 113865 115394 1530 Locate
psaC gene − 115499 115744 246 Locate
ndhE gene − 116000 116305 306 Locate
ndhG gene − 116530 117060 531 Locate
ndhI gene − 117403 117903 501 Locate
ndhA gene − 117984 120096 2113 Locate
ndhH gene − 120098 121309 1212 Locate
rps15 gene − 121376 121708 333 Locate
ycf1 gene − 121919 127573 5655 Locate
trnN-GUU gene + 127792 127863 72 Locate
trnR-ACG gene − 128419 128492 74 Locate
rrn5 gene − 128727 128847 121 Locate
rrn4.5 gene − 129095 129197 103 Locate
rrn23 gene − 129296 132107 2812 Locate
trnA-UGC gene − 132277 133162 886 Locate
trnI-GAU gene − 133227 134247 1021 Locate
ycf68 gene − 133799 134092 294 Locate
rrn16 gene − 134546 136036 1491 Locate
trnV-GAC gene − 136259 136330 72 Locate
rps12 gene + 137903 138693 791 Locate
rps7 gene + 138747 139214 468 Locate
ndhB gene + 139489 141700 2212 Locate
trnL-CAA gene + 142243 142323 81 Locate
ycf15 gene − 142584 142781 198 Locate
ycf2 gene − 142923 149738 6816 Locate
trnI-CAU gene + 149827 149900 74 Locate
rpl23 gene + 150060 150341 282 Locate
rpl2 gene + 150360 151842 1483 Locate
Status Available
Accession PZ130061.1
Length 151,937 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources