Scutellaria violacea var. violacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075913.1 · 3–76 bp · −
psbA · PQ075913.1 · 369–1,427 bp · −
trnK-UUU · PQ075913.1 · 1,669–4,257 bp · −
matK · PQ075913.1 · 1,964–3,499 bp · −
rps16 · PQ075913.1 · 5,130–6,293 bp · −
trnQ-UUG · PQ075913.1 · 7,305–7,376 bp · −
trnS-GCU · PQ075913.1 · 8,503–8,590 bp · −
atpA · PQ075913.1 · 10,372–11,895 bp · −
atpF · PQ075913.1 · 11,978–13,205 bp · −
atpH · PQ075913.1 · 13,571–13,816 bp · −
atpI · PQ075913.1 · 14,812–15,555 bp · −
rps2 · PQ075913.1 · 15,904–16,614 bp · −
rpoC2 · PQ075913.1 · 16,831–21,036 bp · −
rpoC1 · PQ075913.1 · 21,191–24,023 bp · −
rpoB · PQ075913.1 · 24,050–27,262 bp · −
psbM · PQ075913.1 · 30,336–30,440 bp · −
trnD-GUC · PQ075913.1 · 30,967–31,040 bp · −
trnY-GUA · PQ075913.1 · 31,154–31,237 bp · −
trnE-UUC · PQ075913.1 · 31,297–31,369 bp · −
trnS-UGA · PQ075913.1 · 35,987–36,078 bp · −
trnfM-CAU · PQ075913.1 · 37,072–37,145 bp · −
rps14 · PQ075913.1 · 37,295–37,597 bp · −
psaB · PQ075913.1 · 37,725–39,929 bp · −
psaA · PQ075913.1 · 39,955–42,207 bp · −
ycf3 · PQ075913.1 · 42,875–44,797 bp · −
rps4 · PQ075913.1 · 46,054–46,659 bp · −
trnT-UGU · PQ075913.1 · 47,001–47,073 bp · −
ndhJ · PQ075913.1 · 49,347–49,823 bp · −
ndhK · PQ075913.1 · 49,931–50,692 bp · −
ndhC · PQ075913.1 · 50,662–51,024 bp · −
trnV-UAC · PQ075913.1 · 51,880–52,532 bp · −
atpE · PQ075913.1 · 53,001–53,402 bp · −
atpB · PQ075913.1 · 53,399–54,886 bp · −
psbJ · PQ075913.1 · 64,497–64,619 bp · −
psbL · PQ075913.1 · 64,753–64,974 bp · −
psbF · PQ075913.1 · 64,893–65,012 bp · −
psbE · PQ075913.1 · 65,027–65,278 bp · −
trnW-CCA · PQ075913.1 · 66,690–66,763 bp · −
trnP-UGG · PQ075913.1 · 66,933–67,006 bp · −
rpl20 · PQ075913.1 · 68,804–69,190 bp · −
rps12 · PQ075913.1 · 69,977–70,102 bp · −
rps12 · PQ075913.1 · 97,276–98,066 bp · −
clpP · PQ075913.1 · 70,245–72,177 bp · −
psbN · PQ075913.1 · 74,515–74,646 bp · −
rpoA · PQ075913.1 · 78,016–79,029 bp · −
rps11 · PQ075913.1 · 79,101–79,517 bp · −
rpl36 · PQ075913.1 · 79,619–79,732 bp · −
infA · PQ075913.1 · 79,828–80,061 bp · −
rps8 · PQ075913.1 · 80,181–80,591 bp · −
rpl14 · PQ075913.1 · 80,762–81,130 bp · −
rpl16 · PQ075913.1 · 81,257–82,483 bp · −
rps3 · PQ075913.1 · 82,638–83,300 bp · −
rpl22 · PQ075913.1 · 83,302–83,757 bp · −
rps19 · PQ075913.1 · 83,817–84,095 bp · −
rpl2 · PQ075913.1 · 84,150–85,632 bp · −
rpl23 · PQ075913.1 · 85,651–85,932 bp · −
trnI-CAU · PQ075913.1 · 86,092–86,165 bp · −
trnL-CAA · PQ075913.1 · 93,646–93,726 bp · −
ndhB · PQ075913.1 · 94,269–96,480 bp · −
rps7 · PQ075913.1 · 96,755–97,222 bp · −
trnN-GUU · PQ075913.1 · 108,103–108,174 bp · −
ndhF · PQ075913.1 · 109,251–111,491 bp · −
ndhD · PQ075913.1 · 114,016–115,518 bp · −
psaC · PQ075913.1 · 115,638–115,883 bp · −
ndhE · PQ075913.1 · 116,140–116,445 bp · −
ndhG · PQ075913.1 · 116,666–117,196 bp · −
ndhI · PQ075913.1 · 117,561–118,061 bp · −
ndhA · PQ075913.1 · 118,142–120,233 bp · −
ndhH · PQ075913.1 · 120,235–121,446 bp · −
rps15 · PQ075913.1 · 121,519–121,791 bp · −
ycf1 · PQ075913.1 · 122,058–127,703 bp · −
trnR-ACG · PQ075913.1 · 128,540–128,613 bp · −
rrn5 · PQ075913.1 · 128,848–128,968 bp · −
rrn4.5 · PQ075913.1 · 129,216–129,318 bp · −
rrn23 · PQ075913.1 · 129,417–132,229 bp · −
trnA-UGC · PQ075913.1 · 132,399–133,279 bp · −
trnI-GAU · PQ075913.1 · 133,344–134,364 bp · −
ycf68 · PQ075913.1 · 133,970–134,209 bp · −
rrn16 · PQ075913.1 · 134,663–136,153 bp · −
trnV-GAC · PQ075913.1 · 136,381–136,452 bp · −
ycf15 · PQ075913.1 · 142,706–142,903 bp · −
ycf2 · PQ075913.1 · 143,045–149,842 bp · −
psbK · PQ075913.1 · 7,701–7,886 bp · +
psbI · PQ075913.1 · 8,284–8,394 bp · +
trnG-UCC · PQ075913.1 · 9,273–10,033 bp · +
trnR-UCU · PQ075913.1 · 10,204–10,275 bp · +
trnC-GCA · PQ075913.1 · 28,433–28,503 bp · +
petN · PQ075913.1 · 29,215–29,304 bp · +
trnT-GGU · PQ075913.1 · 31,945–32,016 bp · +
psbD · PQ075913.1 · 33,321–34,382 bp · +
psbC · PQ075913.1 · 34,330–35,751 bp · +
psbZ · PQ075913.1 · 36,398–36,586 bp · +
trnG-GCC · PQ075913.1 · 36,858–36,928 bp · +
trnS-GGA · PQ075913.1 · 45,682–45,768 bp · +
trnL-UAA · PQ075913.1 · 47,758–48,318 bp · +
trnF-GAA · PQ075913.1 · 48,626–48,698 bp · +
trnM-CAU · PQ075913.1 · 52,713–52,785 bp · +
rbcL · PQ075913.1 · 55,638–57,101 bp · +
accD · PQ075913.1 · 57,835–59,301 bp · +
psaI · PQ075913.1 · 59,859–59,969 bp · +
ycf4 · PQ075913.1 · 60,403–60,957 bp · +
cemA · PQ075913.1 · 61,695–62,294 bp · +
petA · PQ075913.1 · 62,501–63,463 bp · +
petL · PQ075913.1 · 66,187–66,282 bp · +
petG · PQ075913.1 · 66,458–66,571 bp · +
psaJ · PQ075913.1 · 67,279–67,413 bp · +
rpl33 · PQ075913.1 · 67,887–68,087 bp · +
rps18 · PQ075913.1 · 68,262–68,567 bp · +
rps12 · PQ075913.1 · 138,030–138,820 bp · +
psbB · PQ075913.1 · 72,622–74,148 bp · +
psbT · PQ075913.1 · 74,340–74,441 bp · +
psbH · PQ075913.1 · 74,750–74,971 bp · +
petB · PQ075913.1 · 75,096–76,463 bp · +
petD · PQ075913.1 · 76,652–77,853 bp · +
ycf2 · PQ075913.1 · 86,254–93,051 bp · +
ycf15 · PQ075913.1 · 93,193–93,390 bp · +
trnV-GAC · PQ075913.1 · 99,644–99,715 bp · +
rrn16 · PQ075913.1 · 99,943–101,433 bp · +
trnI-GAU · PQ075913.1 · 101,732–102,752 bp · +
trnA-UGC · PQ075913.1 · 102,817–103,697 bp · +
rrn23 · PQ075913.1 · 103,867–106,679 bp · +
rrn4.5 · PQ075913.1 · 106,778–106,880 bp · +
rrn5 · PQ075913.1 · 107,128–107,248 bp · +
trnR-ACG · PQ075913.1 · 107,483–107,556 bp · +
rpl32 · PQ075913.1 · 112,012–112,188 bp · +
trnL-UAG · PQ075913.1 · 112,633–112,712 bp · +
ccsA · PQ075913.1 · 112,809–113,783 bp · +
trnN-GUU · PQ075913.1 · 127,922–127,993 bp · +
rps7 · PQ075913.1 · 138,874–139,341 bp · +
ndhB · PQ075913.1 · 139,616–141,827 bp · +
trnL-CAA · PQ075913.1 · 142,370–142,450 bp · +
trnI-CAU · PQ075913.1 · 149,931–150,004 bp · +
rpl23 · PQ075913.1 · 150,164–150,445 bp · +
rpl2 · PQ075913.1 · 150,464–151,946 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria violacea var. violacea
ANNOTATED PLASTOME
PQ075913.1
152,041 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38010 76020 114031 152041 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1669 4257 2589 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5130 6293 1164 Locate
trnQ-UUG gene − 7305 7376 72 Locate
psbK gene + 7701 7886 186 Locate
psbI gene + 8284 8394 111 Locate
trnS-GCU gene − 8503 8590 88 Locate
trnG-UCC gene + 9273 10033 761 Locate
trnR-UCU gene + 10204 10275 72 Locate
atpA gene − 10372 11895 1524 Locate
atpF gene − 11978 13205 1228 Locate
atpH gene − 13571 13816 246 Locate
atpI gene − 14812 15555 744 Locate
rps2 gene − 15904 16614 711 Locate
rpoC2 gene − 16831 21036 4206 Locate
rpoC1 gene − 21191 24023 2833 Locate
rpoB gene − 24050 27262 3213 Locate
trnC-GCA gene + 28433 28503 71 Locate
petN gene + 29215 29304 90 Locate
psbM gene − 30336 30440 105 Locate
trnD-GUC gene − 30967 31040 74 Locate
trnY-GUA gene − 31154 31237 84 Locate
trnE-UUC gene − 31297 31369 73 Locate
trnT-GGU gene + 31945 32016 72 Locate
psbD gene + 33321 34382 1062 Locate
psbC gene + 34330 35751 1422 Locate
trnS-UGA gene − 35987 36078 92 Locate
psbZ gene + 36398 36586 189 Locate
trnG-GCC gene + 36858 36928 71 Locate
trnfM-CAU gene − 37072 37145 74 Locate
rps14 gene − 37295 37597 303 Locate
psaB gene − 37725 39929 2205 Locate
psaA gene − 39955 42207 2253 Locate
ycf3 gene − 42875 44797 1923 Locate
trnS-GGA gene + 45682 45768 87 Locate
rps4 gene − 46054 46659 606 Locate
trnT-UGU gene − 47001 47073 73 Locate
trnL-UAA gene + 47758 48318 561 Locate
trnF-GAA gene + 48626 48698 73 Locate
ndhJ gene − 49347 49823 477 Locate
ndhK gene − 49931 50692 762 Locate
ndhC gene − 50662 51024 363 Locate
trnV-UAC gene − 51880 52532 653 Locate
trnM-CAU gene + 52713 52785 73 Locate
atpE gene − 53001 53402 402 Locate
atpB gene − 53399 54886 1488 Locate
rbcL gene + 55638 57101 1464 Locate
accD gene + 57835 59301 1467 Locate
psaI gene + 59859 59969 111 Locate
ycf4 gene + 60403 60957 555 Locate
cemA gene + 61695 62294 600 Locate
petA gene + 62501 63463 963 Locate
psbJ gene − 64497 64619 123 Locate
psbL gene − 64753 64974 222 Locate
psbF gene − 64893 65012 120 Locate
psbE gene − 65027 65278 252 Locate
petL gene + 66187 66282 96 Locate
petG gene + 66458 66571 114 Locate
trnW-CCA gene − 66690 66763 74 Locate
trnP-UGG gene − 66933 67006 74 Locate
psaJ gene + 67279 67413 135 Locate
rpl33 gene + 67887 68087 201 Locate
rps18 gene + 68262 68567 306 Locate
rpl20 gene − 68804 69190 387 Locate
rps12 gene − 69977 70102 126 Locate
clpP gene − 70245 72177 1933 Locate
psbB gene + 72622 74148 1527 Locate
psbT gene + 74340 74441 102 Locate
psbN gene − 74515 74646 132 Locate
psbH gene + 74750 74971 222 Locate
petB gene + 75096 76463 1368 Locate
petD gene + 76652 77853 1202 Locate
rpoA gene − 78016 79029 1014 Locate
rps11 gene − 79101 79517 417 Locate
rpl36 gene − 79619 79732 114 Locate
infA gene − 79828 80061 234 Locate
rps8 gene − 80181 80591 411 Locate
rpl14 gene − 80762 81130 369 Locate
rpl16 gene − 81257 82483 1227 Locate
rps3 gene − 82638 83300 663 Locate
rpl22 gene − 83302 83757 456 Locate
rps19 gene − 83817 84095 279 Locate
rpl2 gene − 84150 85632 1483 Locate
rpl23 gene − 85651 85932 282 Locate
trnI-CAU gene − 86092 86165 74 Locate
ycf2 gene + 86254 93051 6798 Locate
ycf15 gene + 93193 93390 198 Locate
trnL-CAA gene − 93646 93726 81 Locate
ndhB gene − 94269 96480 2212 Locate
rps7 gene − 96755 97222 468 Locate
rps12 gene − 97276 98066 791 Locate
trnV-GAC gene + 99644 99715 72 Locate
rrn16 gene + 99943 101433 1491 Locate
trnI-GAU gene + 101732 102752 1021 Locate
trnA-UGC gene + 102817 103697 881 Locate
rrn23 gene + 103867 106679 2813 Locate
rrn4.5 gene + 106778 106880 103 Locate
rrn5 gene + 107128 107248 121 Locate
trnR-ACG gene + 107483 107556 74 Locate
trnN-GUU gene − 108103 108174 72 Locate
ndhF gene − 109251 111491 2241 Locate
rpl32 gene + 112012 112188 177 Locate
trnL-UAG gene + 112633 112712 80 Locate
ccsA gene + 112809 113783 975 Locate
ndhD gene − 114016 115518 1503 Locate
psaC gene − 115638 115883 246 Locate
ndhE gene − 116140 116445 306 Locate
ndhG gene − 116666 117196 531 Locate
ndhI gene − 117561 118061 501 Locate
ndhA gene − 118142 120233 2092 Locate
ndhH gene − 120235 121446 1212 Locate
rps15 gene − 121519 121791 273 Locate
ycf1 gene − 122058 127703 5646 Locate
trnN-GUU gene + 127922 127993 72 Locate
trnR-ACG gene − 128540 128613 74 Locate
rrn5 gene − 128848 128968 121 Locate
rrn4.5 gene − 129216 129318 103 Locate
rrn23 gene − 129417 132229 2813 Locate
trnA-UGC gene − 132399 133279 881 Locate
trnI-GAU gene − 133344 134364 1021 Locate
ycf68 gene − 133970 134209 240 Locate
rrn16 gene − 134663 136153 1491 Locate
trnV-GAC gene − 136381 136452 72 Locate
rps12 gene + 138030 138820 791 Locate
rps7 gene + 138874 139341 468 Locate
ndhB gene + 139616 141827 2212 Locate
trnL-CAA gene + 142370 142450 81 Locate
ycf15 gene − 142706 142903 198 Locate
ycf2 gene − 143045 149842 6798 Locate
trnI-CAU gene + 149931 150004 74 Locate
rpl23 gene + 150164 150445 282 Locate
rpl2 gene + 150464 151946 1483 Locate
Status Available
Accession PQ075913.1
Length 152,041 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources