Scutellaria violacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058250.1 · 3–76 bp · −
psbA · PQ058250.1 · 379–1,437 bp · −
trnK-UUU · PQ058250.1 · 1,670–4,266 bp · −
matK · PQ058250.1 · 1,965–3,509 bp · −
rps16 · PQ058250.1 · 5,176–6,354 bp · −
trnQ-UUG · PQ058250.1 · 7,451–7,522 bp · −
trnS-GCU · PQ058250.1 · 8,652–8,739 bp · −
atpA · PQ058250.1 · 10,534–12,057 bp · −
atpF · PQ058250.1 · 12,140–13,367 bp · −
atpH · PQ058250.1 · 13,743–13,988 bp · −
atpI · PQ058250.1 · 14,977–15,720 bp · −
rps2 · PQ058250.1 · 16,068–16,904 bp · −
rpoC2 · PQ058250.1 · 16,995–21,200 bp · −
rpoC1 · PQ058250.1 · 21,355–24,161 bp · −
rpoB · PQ058250.1 · 24,188–27,400 bp · −
psbM · PQ058250.1 · 30,500–30,613 bp · −
trnD-GUC · PQ058250.1 · 31,133–31,206 bp · −
trnY-GUA · PQ058250.1 · 31,320–31,403 bp · −
trnE-UUC · PQ058250.1 · 31,463–31,535 bp · −
trnS-UGA · PQ058250.1 · 37,332–37,423 bp · −
trnfM-CAU · PQ058250.1 · 38,427–38,500 bp · −
rps14 · PQ058250.1 · 38,650–38,952 bp · −
psaB · PQ058250.1 · 39,080–41,284 bp · −
psaA · PQ058250.1 · 41,310–43,562 bp · −
ycf3 · PQ058250.1 · 44,267–46,189 bp · −
rps4 · PQ058250.1 · 47,425–48,030 bp · −
trnT-UGU · PQ058250.1 · 48,372–48,444 bp · −
ndhJ · PQ058250.1 · 50,720–51,196 bp · −
ndhK · PQ058250.1 · 51,304–51,981 bp · −
ndhC · PQ058250.1 · 52,034–52,396 bp · −
trnV-UAC · PQ058250.1 · 53,368–54,020 bp · −
atpE · PQ058250.1 · 54,483–54,884 bp · −
atpB · PQ058250.1 · 54,881–56,377 bp · −
psbJ · PQ058250.1 · 66,136–66,258 bp · −
psbL · PQ058250.1 · 66,392–66,613 bp · −
psbF · PQ058250.1 · 66,532–66,651 bp · −
psbE · PQ058250.1 · 66,666–66,917 bp · −
trnW-CCA · PQ058250.1 · 68,329–68,402 bp · −
trnP-UGG · PQ058250.1 · 68,573–68,646 bp · −
rpl20 · PQ058250.1 · 70,435–70,821 bp · −
rps12 · PQ058250.1 · 71,607–71,732 bp · −
rps12 · PQ058250.1 · 98,906–99,696 bp · −
clpP · PQ058250.1 · 71,874–73,794 bp · −
psbN · PQ058250.1 · 76,143–76,274 bp · −
rpoA · PQ058250.1 · 79,873–80,739 bp · −
rps11 · PQ058250.1 · 80,742–81,158 bp · −
rpl36 · PQ058250.1 · 81,260–81,373 bp · −
infA · PQ058250.1 · 81,469–81,702 bp · −
rps8 · PQ058250.1 · 81,822–82,232 bp · −
rpl14 · PQ058250.1 · 82,403–82,771 bp · −
rpl16 · PQ058250.1 · 82,898–84,142 bp · −
rps3 · PQ058250.1 · 84,297–84,959 bp · −
rpl22 · PQ058250.1 · 84,961–85,416 bp · −
rps19 · PQ058250.1 · 85,476–85,754 bp · −
rpl2 · PQ058250.1 · 85,809–87,291 bp · −
rpl23 · PQ058250.1 · 87,310–87,591 bp · −
trnI-CAU · PQ058250.1 · 87,751–87,824 bp · −
trnL-CAA · PQ058250.1 · 95,276–95,356 bp · −
ndhB · PQ058250.1 · 95,899–98,110 bp · −
rps7 · PQ058250.1 · 98,385–98,852 bp · −
trnN-GUU · PQ058250.1 · 109,741–109,812 bp · −
ndhF · PQ058250.1 · 110,888–113,128 bp · −
ndhD · PQ058250.1 · 115,641–117,143 bp · −
psaC · PQ058250.1 · 117,270–117,515 bp · −
ndhE · PQ058250.1 · 117,763–118,068 bp · −
ndhG · PQ058250.1 · 118,299–118,829 bp · −
ndhI · PQ058250.1 · 119,181–119,681 bp · −
ndhA · PQ058250.1 · 119,762–121,863 bp · −
ndhH · PQ058250.1 · 121,865–123,046 bp · −
rps15 · PQ058250.1 · 123,143–123,415 bp · −
ycf1 · PQ058250.1 · 123,684–129,233 bp · −
trnR-ACG · PQ058250.1 · 130,180–130,253 bp · −
rrn5 · PQ058250.1 · 130,488–130,608 bp · −
rrn4.5 · PQ058250.1 · 130,856–130,958 bp · −
rrn23 · PQ058250.1 · 131,057–133,869 bp · −
trnA-UGC · PQ058250.1 · 134,039–134,927 bp · −
trnI-GAU · PQ058250.1 · 134,992–136,012 bp · −
ycf68 · PQ058250.1 · 135,618–135,857 bp · −
rrn16 · PQ058250.1 · 136,311–137,801 bp · −
trnV-GAC · PQ058250.1 · 138,029–138,100 bp · −
ycf15 · PQ058250.1 · 144,402–144,551 bp · −
ycf2 · PQ058250.1 · 144,685–151,461 bp · −
psbK · PQ058250.1 · 7,847–8,032 bp · +
psbI · PQ058250.1 · 8,423–8,533 bp · +
trnG-UCC · PQ058250.1 · 9,430–10,191 bp · +
trnR-UCU · PQ058250.1 · 10,366–10,437 bp · +
trnC-GCA · PQ058250.1 · 28,557–28,627 bp · +
petN · PQ058250.1 · 29,339–29,428 bp · +
trnT-GGU · PQ058250.1 · 32,104–32,175 bp · +
psbD · PQ058250.1 · 34,665–35,726 bp · +
psbC · PQ058250.1 · 35,674–37,095 bp · +
psbZ · PQ058250.1 · 37,743–37,931 bp · +
trnG-GCC · PQ058250.1 · 38,203–38,273 bp · +
trnS-GGA · PQ058250.1 · 47,061–47,147 bp · +
trnL-UAA · PQ058250.1 · 49,127–49,694 bp · +
trnF-GAA · PQ058250.1 · 49,993–50,065 bp · +
trnM-CAU · PQ058250.1 · 54,201–54,273 bp · +
rbcL · PQ058250.1 · 57,130–58,593 bp · +
accD · PQ058250.1 · 59,307–60,785 bp · +
psaI · PQ058250.1 · 61,498–61,608 bp · +
ycf4 · PQ058250.1 · 62,042–62,596 bp · +
cemA · PQ058250.1 · 63,338–63,937 bp · +
petA · PQ058250.1 · 64,145–65,107 bp · +
petL · PQ058250.1 · 67,826–67,921 bp · +
petG · PQ058250.1 · 68,097–68,210 bp · +
psaJ · PQ058250.1 · 68,919–69,053 bp · +
rpl33 · PQ058250.1 · 69,525–69,725 bp · +
rps18 · PQ058250.1 · 69,895–70,200 bp · +
rps12 · PQ058250.1 · 139,678–140,468 bp · +
psbB · PQ058250.1 · 74,257–75,783 bp · +
psbT · PQ058250.1 · 75,975–76,082 bp · +
psbH · PQ058250.1 · 76,378–76,599 bp · +
petB · PQ058250.1 · 76,724–78,098 bp · +
petD · PQ058250.1 · 78,287–79,498 bp · +
ycf2 · PQ058250.1 · 87,913–94,689 bp · +
ycf15 · PQ058250.1 · 94,823–94,972 bp · +
trnV-GAC · PQ058250.1 · 101,274–101,345 bp · +
rrn16 · PQ058250.1 · 101,573–103,063 bp · +
trnI-GAU · PQ058250.1 · 103,362–104,382 bp · +
trnA-UGC · PQ058250.1 · 104,447–105,335 bp · +
rrn23 · PQ058250.1 · 105,505–108,317 bp · +
rrn4.5 · PQ058250.1 · 108,416–108,518 bp · +
rrn5 · PQ058250.1 · 108,766–108,886 bp · +
trnR-ACG · PQ058250.1 · 109,121–109,194 bp · +
rpl32 · PQ058250.1 · 113,642–113,818 bp · +
trnL-UAG · PQ058250.1 · 114,253–114,332 bp · +
ccsA · PQ058250.1 · 114,433–115,407 bp · +
trnN-GUU · PQ058250.1 · 129,562–129,633 bp · +
rps7 · PQ058250.1 · 140,522–140,989 bp · +
ndhB · PQ058250.1 · 141,264–143,475 bp · +
trnL-CAA · PQ058250.1 · 144,018–144,098 bp · +
trnI-CAU · PQ058250.1 · 151,550–151,623 bp · +
rpl23 · PQ058250.1 · 151,783–152,064 bp · +
rpl2 · PQ058250.1 · 152,083–153,565 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria violacea
ANNOTATED PLASTOME
PQ058250.1
153,660 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38415 76830 115245 153660 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1670 4266 2597 Locate
matK gene − 1965 3509 1545 Locate
rps16 gene − 5176 6354 1179 Locate
trnQ-UUG gene − 7451 7522 72 Locate
psbK gene + 7847 8032 186 Locate
psbI gene + 8423 8533 111 Locate
trnS-GCU gene − 8652 8739 88 Locate
trnG-UCC gene + 9430 10191 762 Locate
trnR-UCU gene + 10366 10437 72 Locate
atpA gene − 10534 12057 1524 Locate
atpF gene − 12140 13367 1228 Locate
atpH gene − 13743 13988 246 Locate
atpI gene − 14977 15720 744 Locate
rps2 gene − 16068 16904 837 Locate
rpoC2 gene − 16995 21200 4206 Locate
rpoC1 gene − 21355 24161 2807 Locate
rpoB gene − 24188 27400 3213 Locate
trnC-GCA gene + 28557 28627 71 Locate
petN gene + 29339 29428 90 Locate
psbM gene − 30500 30613 114 Locate
trnD-GUC gene − 31133 31206 74 Locate
trnY-GUA gene − 31320 31403 84 Locate
trnE-UUC gene − 31463 31535 73 Locate
trnT-GGU gene + 32104 32175 72 Locate
psbD gene + 34665 35726 1062 Locate
psbC gene + 35674 37095 1422 Locate
trnS-UGA gene − 37332 37423 92 Locate
psbZ gene + 37743 37931 189 Locate
trnG-GCC gene + 38203 38273 71 Locate
trnfM-CAU gene − 38427 38500 74 Locate
rps14 gene − 38650 38952 303 Locate
psaB gene − 39080 41284 2205 Locate
psaA gene − 41310 43562 2253 Locate
ycf3 gene − 44267 46189 1923 Locate
trnS-GGA gene + 47061 47147 87 Locate
rps4 gene − 47425 48030 606 Locate
trnT-UGU gene − 48372 48444 73 Locate
trnL-UAA gene + 49127 49694 568 Locate
trnF-GAA gene + 49993 50065 73 Locate
ndhJ gene − 50720 51196 477 Locate
ndhK gene − 51304 51981 678 Locate
ndhC gene − 52034 52396 363 Locate
trnV-UAC gene − 53368 54020 653 Locate
trnM-CAU gene + 54201 54273 73 Locate
atpE gene − 54483 54884 402 Locate
atpB gene − 54881 56377 1497 Locate
rbcL gene + 57130 58593 1464 Locate
accD gene + 59307 60785 1479 Locate
psaI gene + 61498 61608 111 Locate
ycf4 gene + 62042 62596 555 Locate
cemA gene + 63338 63937 600 Locate
petA gene + 64145 65107 963 Locate
psbJ gene − 66136 66258 123 Locate
psbL gene − 66392 66613 222 Locate
psbF gene − 66532 66651 120 Locate
psbE gene − 66666 66917 252 Locate
petL gene + 67826 67921 96 Locate
petG gene + 68097 68210 114 Locate
trnW-CCA gene − 68329 68402 74 Locate
trnP-UGG gene − 68573 68646 74 Locate
psaJ gene + 68919 69053 135 Locate
rpl33 gene + 69525 69725 201 Locate
rps18 gene + 69895 70200 306 Locate
rpl20 gene − 70435 70821 387 Locate
rps12 gene − 71607 71732 126 Locate
clpP gene − 71874 73794 1921 Locate
psbB gene + 74257 75783 1527 Locate
psbT gene + 75975 76082 108 Locate
psbN gene − 76143 76274 132 Locate
psbH gene + 76378 76599 222 Locate
petB gene + 76724 78098 1375 Locate
petD gene + 78287 79498 1212 Locate
rpoA gene − 79873 80739 867 Locate
rps11 gene − 80742 81158 417 Locate
rpl36 gene − 81260 81373 114 Locate
infA gene − 81469 81702 234 Locate
rps8 gene − 81822 82232 411 Locate
rpl14 gene − 82403 82771 369 Locate
rpl16 gene − 82898 84142 1245 Locate
rps3 gene − 84297 84959 663 Locate
rpl22 gene − 84961 85416 456 Locate
rps19 gene − 85476 85754 279 Locate
rpl2 gene − 85809 87291 1483 Locate
rpl23 gene − 87310 87591 282 Locate
trnI-CAU gene − 87751 87824 74 Locate
ycf2 gene + 87913 94689 6777 Locate
ycf15 gene + 94823 94972 150 Locate
trnL-CAA gene − 95276 95356 81 Locate
ndhB gene − 95899 98110 2212 Locate
rps7 gene − 98385 98852 468 Locate
rps12 gene − 98906 99696 791 Locate
trnV-GAC gene + 101274 101345 72 Locate
rrn16 gene + 101573 103063 1491 Locate
trnI-GAU gene + 103362 104382 1021 Locate
trnA-UGC gene + 104447 105335 889 Locate
rrn23 gene + 105505 108317 2813 Locate
rrn4.5 gene + 108416 108518 103 Locate
rrn5 gene + 108766 108886 121 Locate
trnR-ACG gene + 109121 109194 74 Locate
trnN-GUU gene − 109741 109812 72 Locate
ndhF gene − 110888 113128 2241 Locate
rpl32 gene + 113642 113818 177 Locate
trnL-UAG gene + 114253 114332 80 Locate
ccsA gene + 114433 115407 975 Locate
ndhD gene − 115641 117143 1503 Locate
psaC gene − 117270 117515 246 Locate
ndhE gene − 117763 118068 306 Locate
ndhG gene − 118299 118829 531 Locate
ndhI gene − 119181 119681 501 Locate
ndhA gene − 119762 121863 2102 Locate
ndhH gene − 121865 123046 1182 Locate
rps15 gene − 123143 123415 273 Locate
ycf1 gene − 123684 129233 5550 Locate
trnN-GUU gene + 129562 129633 72 Locate
trnR-ACG gene − 130180 130253 74 Locate
rrn5 gene − 130488 130608 121 Locate
rrn4.5 gene − 130856 130958 103 Locate
rrn23 gene − 131057 133869 2813 Locate
trnA-UGC gene − 134039 134927 889 Locate
trnI-GAU gene − 134992 136012 1021 Locate
ycf68 gene − 135618 135857 240 Locate
rrn16 gene − 136311 137801 1491 Locate
trnV-GAC gene − 138029 138100 72 Locate
rps12 gene + 139678 140468 791 Locate
rps7 gene + 140522 140989 468 Locate
ndhB gene + 141264 143475 2212 Locate
trnL-CAA gene + 144018 144098 81 Locate
ycf15 gene − 144402 144551 150 Locate
ycf2 gene − 144685 151461 6777 Locate
trnI-CAU gene + 151550 151623 74 Locate
rpl23 gene + 151783 152064 282 Locate
rpl2 gene + 152083 153565 1483 Locate
Status Available
Accession PQ058250.1
Length 153,660 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources