Scutellaria violascens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058253.1 · 3–76 bp · −
psbA · PQ058253.1 · 373–1,431 bp · −
trnK-UUU · PQ058253.1 · 1,672–4,270 bp · −
matK · PQ058253.1 · 1,967–3,511 bp · −
rps16 · PQ058253.1 · 5,193–6,357 bp · −
trnQ-UUG · PQ058253.1 · 7,415–7,486 bp · −
trnS-GCU · PQ058253.1 · 8,624–8,711 bp · −
atpA · PQ058253.1 · 10,524–12,047 bp · −
atpF · PQ058253.1 · 12,130–13,360 bp · −
atpH · PQ058253.1 · 13,722–13,967 bp · −
atpI · PQ058253.1 · 14,954–15,697 bp · −
rps2 · PQ058253.1 · 16,045–16,755 bp · −
rpoC2 · PQ058253.1 · 16,980–21,179 bp · −
rpoC1 · PQ058253.1 · 21,334–24,183 bp · −
rpoB · PQ058253.1 · 24,210–27,422 bp · −
psbM · PQ058253.1 · 30,520–30,624 bp · −
trnD-GUC · PQ058253.1 · 31,151–31,224 bp · −
trnY-GUA · PQ058253.1 · 31,338–31,421 bp · −
trnE-UUC · PQ058253.1 · 31,481–31,553 bp · −
trnS-UGA · PQ058253.1 · 36,260–36,351 bp · −
trnfM-CAU · PQ058253.1 · 37,339–37,412 bp · −
rps14 · PQ058253.1 · 37,567–37,869 bp · −
psaB · PQ058253.1 · 37,997–40,201 bp · −
psaA · PQ058253.1 · 40,228–42,480 bp · −
ycf3 · PQ058253.1 · 43,190–45,110 bp · −
rps4 · PQ058253.1 · 46,296–46,901 bp · −
trnT-UGU · PQ058253.1 · 47,250–47,322 bp · −
ndhJ · PQ058253.1 · 49,601–50,077 bp · −
ndhK · PQ058253.1 · 50,186–50,863 bp · −
ndhC · PQ058253.1 · 50,916–51,278 bp · −
trnV-UAC · PQ058253.1 · 52,265–52,917 bp · −
atpE · PQ058253.1 · 53,388–53,789 bp · −
atpB · PQ058253.1 · 53,786–55,282 bp · −
psbJ · PQ058253.1 · 64,985–65,107 bp · −
psbL · PQ058253.1 · 65,241–65,357 bp · −
psbF · PQ058253.1 · 65,381–65,500 bp · −
psbE · PQ058253.1 · 65,515–65,766 bp · −
trnW-CCA · PQ058253.1 · 67,145–67,218 bp · −
trnP-UGG · PQ058253.1 · 67,388–67,461 bp · −
rpl20 · PQ058253.1 · 69,264–69,650 bp · −
rps12 · PQ058253.1 · 70,445–70,558 bp · −
rps12 · PQ058253.1 · 97,671–98,461 bp · −
clpP · PQ058253.1 · 70,700–72,641 bp · −
psbN · PQ058253.1 · 74,978–75,109 bp · −
rpoA · PQ058253.1 · 78,462–79,469 bp · −
rps11 · PQ058253.1 · 79,541–79,957 bp · −
rpl36 · PQ058253.1 · 80,059–80,172 bp · −
infA · PQ058253.1 · 80,268–80,501 bp · −
rps8 · PQ058253.1 · 80,621–81,031 bp · −
rpl14 · PQ058253.1 · 81,196–81,564 bp · −
rpl16 · PQ058253.1 · 81,692–82,912 bp · −
rps3 · PQ058253.1 · 83,018–83,680 bp · −
rpl22 · PQ058253.1 · 83,682–84,137 bp · −
rps19 · PQ058253.1 · 84,197–84,475 bp · −
rpl2 · PQ058253.1 · 84,530–86,012 bp · −
rpl23 · PQ058253.1 · 86,031–86,312 bp · −
trnI-CAU · PQ058253.1 · 86,472–86,545 bp · −
trnL-CAA · PQ058253.1 · 94,042–94,122 bp · −
ndhB · PQ058253.1 · 94,664–96,875 bp · −
rps7 · PQ058253.1 · 97,150–97,617 bp · −
trnN-GUU · PQ058253.1 · 108,498–108,569 bp · −
ndhF · PQ058253.1 · 109,646–111,892 bp · −
ndhD · PQ058253.1 · 114,420–115,922 bp · −
psaC · PQ058253.1 · 116,049–116,294 bp · −
ndhE · PQ058253.1 · 116,550–116,855 bp · −
ndhG · PQ058253.1 · 117,088–117,618 bp · −
ndhI · PQ058253.1 · 117,976–118,476 bp · −
ndhA · PQ058253.1 · 118,557–120,647 bp · −
ndhH · PQ058253.1 · 120,649–121,830 bp · −
rps15 · PQ058253.1 · 121,927–122,199 bp · −
ycf1 · PQ058253.1 · 122,469–128,120 bp · −
trnR-ACG · PQ058253.1 · 128,967–129,040 bp · −
rrn5 · PQ058253.1 · 129,275–129,395 bp · −
rrn4.5 · PQ058253.1 · 129,643–129,745 bp · −
rrn23 · PQ058253.1 · 129,844–132,655 bp · −
trnA-UGC · PQ058253.1 · 132,825–133,713 bp · −
trnI-GAU · PQ058253.1 · 133,778–134,797 bp · −
ycf68 · PQ058253.1 · 134,349–134,642 bp · −
rrn16 · PQ058253.1 · 135,096–136,586 bp · −
trnV-GAC · PQ058253.1 · 136,813–136,884 bp · −
ycf15 · PQ058253.1 · 143,126–143,374 bp · −
ycf2 · PQ058253.1 · 143,465–150,274 bp · −
psbK · PQ058253.1 · 7,811–7,996 bp · +
psbI · PQ058253.1 · 8,396–8,506 bp · +
trnG-UCC · PQ058253.1 · 9,429–10,181 bp · +
trnR-UCU · PQ058253.1 · 10,356–10,427 bp · +
trnC-GCA · PQ058253.1 · 28,605–28,675 bp · +
petN · PQ058253.1 · 29,409–29,498 bp · +
trnT-GGU · PQ058253.1 · 32,192–32,263 bp · +
psbD · PQ058253.1 · 33,581–34,642 bp · +
psbC · PQ058253.1 · 34,590–36,011 bp · +
psbZ · PQ058253.1 · 36,667–36,855 bp · +
trnG-GCC · PQ058253.1 · 37,128–37,198 bp · +
trnS-GGA · PQ058253.1 · 45,924–46,010 bp · +
trnL-UAA · PQ058253.1 · 48,001–48,568 bp · +
trnF-GAA · PQ058253.1 · 48,876–48,948 bp · +
trnM-CAU · PQ058253.1 · 53,106–53,178 bp · +
rbcL · PQ058253.1 · 56,031–57,491 bp · +
accD · PQ058253.1 · 58,205–59,683 bp · +
psaI · PQ058253.1 · 60,395–60,505 bp · +
ycf4 · PQ058253.1 · 60,938–61,492 bp · +
cemA · PQ058253.1 · 62,221–62,820 bp · +
petA · PQ058253.1 · 63,025–63,987 bp · +
petL · PQ058253.1 · 66,641–66,736 bp · +
petG · PQ058253.1 · 66,913–67,026 bp · +
psaJ · PQ058253.1 · 67,734–67,868 bp · +
rpl33 · PQ058253.1 · 68,349–68,549 bp · +
rps18 · PQ058253.1 · 68,724–69,029 bp · +
rps12 · PQ058253.1 · 138,447–139,237 bp · +
psbB · PQ058253.1 · 73,099–74,625 bp · +
psbT · PQ058253.1 · 74,810–74,917 bp · +
psbH · PQ058253.1 · 75,213–75,434 bp · +
petB · PQ058253.1 · 75,559–76,912 bp · +
petD · PQ058253.1 · 77,101–78,299 bp · +
ycf2 · PQ058253.1 · 86,634–93,443 bp · +
ycf15 · PQ058253.1 · 93,534–93,782 bp · +
trnV-GAC · PQ058253.1 · 100,024–100,095 bp · +
rrn16 · PQ058253.1 · 100,322–101,812 bp · +
trnI-GAU · PQ058253.1 · 102,111–103,130 bp · +
trnA-UGC · PQ058253.1 · 103,195–104,083 bp · +
rrn23 · PQ058253.1 · 104,253–107,064 bp · +
rrn4.5 · PQ058253.1 · 107,163–107,265 bp · +
rrn5 · PQ058253.1 · 107,513–107,633 bp · +
trnR-ACG · PQ058253.1 · 107,868–107,941 bp · +
rpl32 · PQ058253.1 · 112,410–112,586 bp · +
trnL-UAG · PQ058253.1 · 113,038–113,117 bp · +
ccsA · PQ058253.1 · 113,207–114,181 bp · +
trnN-GUU · PQ058253.1 · 128,339–128,410 bp · +
rps7 · PQ058253.1 · 139,291–139,758 bp · +
ndhB · PQ058253.1 · 140,033–142,244 bp · +
trnL-CAA · PQ058253.1 · 142,786–142,866 bp · +
trnI-CAU · PQ058253.1 · 150,363–150,436 bp · +
rpl23 · PQ058253.1 · 150,596–150,877 bp · +
rpl2 · PQ058253.1 · 150,896–152,378 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria violascens
ANNOTATED PLASTOME
PQ058253.1
152,473 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38118 76236 114355 152473 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1672 4270 2599 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5193 6357 1165 Locate
trnQ-UUG gene − 7415 7486 72 Locate
psbK gene + 7811 7996 186 Locate
psbI gene + 8396 8506 111 Locate
trnS-GCU gene − 8624 8711 88 Locate
trnG-UCC gene + 9429 10181 753 Locate
trnR-UCU gene + 10356 10427 72 Locate
atpA gene − 10524 12047 1524 Locate
atpF gene − 12130 13360 1231 Locate
atpH gene − 13722 13967 246 Locate
atpI gene − 14954 15697 744 Locate
rps2 gene − 16045 16755 711 Locate
rpoC2 gene − 16980 21179 4200 Locate
rpoC1 gene − 21334 24183 2850 Locate
rpoB gene − 24210 27422 3213 Locate
trnC-GCA gene + 28605 28675 71 Locate
petN gene + 29409 29498 90 Locate
psbM gene − 30520 30624 105 Locate
trnD-GUC gene − 31151 31224 74 Locate
trnY-GUA gene − 31338 31421 84 Locate
trnE-UUC gene − 31481 31553 73 Locate
trnT-GGU gene + 32192 32263 72 Locate
psbD gene + 33581 34642 1062 Locate
psbC gene + 34590 36011 1422 Locate
trnS-UGA gene − 36260 36351 92 Locate
psbZ gene + 36667 36855 189 Locate
trnG-GCC gene + 37128 37198 71 Locate
trnfM-CAU gene − 37339 37412 74 Locate
rps14 gene − 37567 37869 303 Locate
psaB gene − 37997 40201 2205 Locate
psaA gene − 40228 42480 2253 Locate
ycf3 gene − 43190 45110 1921 Locate
trnS-GGA gene + 45924 46010 87 Locate
rps4 gene − 46296 46901 606 Locate
trnT-UGU gene − 47250 47322 73 Locate
trnL-UAA gene + 48001 48568 568 Locate
trnF-GAA gene + 48876 48948 73 Locate
ndhJ gene − 49601 50077 477 Locate
ndhK gene − 50186 50863 678 Locate
ndhC gene − 50916 51278 363 Locate
trnV-UAC gene − 52265 52917 653 Locate
trnM-CAU gene + 53106 53178 73 Locate
atpE gene − 53388 53789 402 Locate
atpB gene − 53786 55282 1497 Locate
rbcL gene + 56031 57491 1461 Locate
accD gene + 58205 59683 1479 Locate
psaI gene + 60395 60505 111 Locate
ycf4 gene + 60938 61492 555 Locate
cemA gene + 62221 62820 600 Locate
petA gene + 63025 63987 963 Locate
psbJ gene − 64985 65107 123 Locate
psbL gene − 65241 65357 117 Locate
psbF gene − 65381 65500 120 Locate
psbE gene − 65515 65766 252 Locate
petL gene + 66641 66736 96 Locate
petG gene + 66913 67026 114 Locate
trnW-CCA gene − 67145 67218 74 Locate
trnP-UGG gene − 67388 67461 74 Locate
psaJ gene + 67734 67868 135 Locate
rpl33 gene + 68349 68549 201 Locate
rps18 gene + 68724 69029 306 Locate
rpl20 gene − 69264 69650 387 Locate
rps12 gene − 70445 70558 114 Locate
clpP gene − 70700 72641 1942 Locate
psbB gene + 73099 74625 1527 Locate
psbT gene + 74810 74917 108 Locate
psbN gene − 74978 75109 132 Locate
psbH gene + 75213 75434 222 Locate
petB gene + 75559 76912 1354 Locate
petD gene + 77101 78299 1199 Locate
rpoA gene − 78462 79469 1008 Locate
rps11 gene − 79541 79957 417 Locate
rpl36 gene − 80059 80172 114 Locate
infA gene − 80268 80501 234 Locate
rps8 gene − 80621 81031 411 Locate
rpl14 gene − 81196 81564 369 Locate
rpl16 gene − 81692 82912 1221 Locate
rps3 gene − 83018 83680 663 Locate
rpl22 gene − 83682 84137 456 Locate
rps19 gene − 84197 84475 279 Locate
rpl2 gene − 84530 86012 1483 Locate
rpl23 gene − 86031 86312 282 Locate
trnI-CAU gene − 86472 86545 74 Locate
ycf2 gene + 86634 93443 6810 Locate
ycf15 gene + 93534 93782 249 Locate
trnL-CAA gene − 94042 94122 81 Locate
ndhB gene − 94664 96875 2212 Locate
rps7 gene − 97150 97617 468 Locate
rps12 gene − 97671 98461 791 Locate
trnV-GAC gene + 100024 100095 72 Locate
rrn16 gene + 100322 101812 1491 Locate
trnI-GAU gene + 102111 103130 1020 Locate
trnA-UGC gene + 103195 104083 889 Locate
rrn23 gene + 104253 107064 2812 Locate
rrn4.5 gene + 107163 107265 103 Locate
rrn5 gene + 107513 107633 121 Locate
trnR-ACG gene + 107868 107941 74 Locate
trnN-GUU gene − 108498 108569 72 Locate
ndhF gene − 109646 111892 2247 Locate
rpl32 gene + 112410 112586 177 Locate
trnL-UAG gene + 113038 113117 80 Locate
ccsA gene + 113207 114181 975 Locate
ndhD gene − 114420 115922 1503 Locate
psaC gene − 116049 116294 246 Locate
ndhE gene − 116550 116855 306 Locate
ndhG gene − 117088 117618 531 Locate
ndhI gene − 117976 118476 501 Locate
ndhA gene − 118557 120647 2091 Locate
ndhH gene − 120649 121830 1182 Locate
rps15 gene − 121927 122199 273 Locate
ycf1 gene − 122469 128120 5652 Locate
trnN-GUU gene + 128339 128410 72 Locate
trnR-ACG gene − 128967 129040 74 Locate
rrn5 gene − 129275 129395 121 Locate
rrn4.5 gene − 129643 129745 103 Locate
rrn23 gene − 129844 132655 2812 Locate
trnA-UGC gene − 132825 133713 889 Locate
trnI-GAU gene − 133778 134797 1020 Locate
ycf68 gene − 134349 134642 294 Locate
rrn16 gene − 135096 136586 1491 Locate
trnV-GAC gene − 136813 136884 72 Locate
rps12 gene + 138447 139237 791 Locate
rps7 gene + 139291 139758 468 Locate
ndhB gene + 140033 142244 2212 Locate
trnL-CAA gene + 142786 142866 81 Locate
ycf15 gene − 143126 143374 249 Locate
ycf2 gene − 143465 150274 6810 Locate
trnI-CAU gene + 150363 150436 74 Locate
rpl23 gene + 150596 150877 282 Locate
rpl2 gene + 150896 152378 1483 Locate
Status Available
Accession PQ058253.1
Length 152,473 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources