Scutellaria woodii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058281.1 · 1–74 bp · −
psbA · PQ058281.1 · 268–1,326 bp · −
trnK-UUU · PQ058281.1 · 1,559–4,148 bp · −
matK · PQ058281.1 · 1,854–3,392 bp · −
rps16 · PQ058281.1 · 5,042–6,217 bp · −
trnQ-UUG · PQ058281.1 · 7,302–7,373 bp · −
trnS-GCU · PQ058281.1 · 8,507–8,594 bp · −
atpA · PQ058281.1 · 10,396–11,919 bp · −
atpF · PQ058281.1 · 12,011–13,240 bp · −
atpH · PQ058281.1 · 13,607–13,852 bp · −
atpI · PQ058281.1 · 14,838–15,581 bp · −
rps2 · PQ058281.1 · 15,931–16,767 bp · −
rpoC2 · PQ058281.1 · 16,858–21,063 bp · −
rpoC1 · PQ058281.1 · 21,218–24,045 bp · −
rpoB · PQ058281.1 · 24,072–27,284 bp · −
psbM · PQ058281.1 · 30,313–30,417 bp · −
trnD-GUC · PQ058281.1 · 30,943–31,016 bp · −
trnY-GUA · PQ058281.1 · 31,130–31,213 bp · −
trnE-UUC · PQ058281.1 · 31,273–31,345 bp · −
trnS-UGA · PQ058281.1 · 35,980–36,071 bp · −
trnfM-CAU · PQ058281.1 · 37,054–37,127 bp · −
rps14 · PQ058281.1 · 37,277–37,579 bp · −
psaB · PQ058281.1 · 37,707–39,911 bp · −
psaA · PQ058281.1 · 39,937–42,189 bp · −
ycf3 · PQ058281.1 · 42,890–44,827 bp · −
rps4 · PQ058281.1 · 46,089–46,694 bp · −
trnT-UGU · PQ058281.1 · 47,028–47,100 bp · −
ndhJ · PQ058281.1 · 49,377–49,853 bp · −
ndhK · PQ058281.1 · 49,961–50,638 bp · −
ndhC · PQ058281.1 · 50,691–51,053 bp · −
trnV-UAC · PQ058281.1 · 51,507–52,160 bp · −
atpE · PQ058281.1 · 52,622–53,023 bp · −
atpB · PQ058281.1 · 53,020–54,516 bp · −
psbJ · PQ058281.1 · 64,301–64,423 bp · −
psbL · PQ058281.1 · 64,557–64,673 bp · −
psbF · PQ058281.1 · 64,697–64,816 bp · −
psbE · PQ058281.1 · 64,831–65,082 bp · −
trnW-CCA · PQ058281.1 · 66,491–66,564 bp · −
trnP-UGG · PQ058281.1 · 66,724–66,797 bp · −
rpl20 · PQ058281.1 · 68,595–68,981 bp · −
rps12 · PQ058281.1 · 69,778–69,891 bp · −
rps12 · PQ058281.1 · 97,117–97,907 bp · −
clpP · PQ058281.1 · 70,034–71,979 bp · −
psbN · PQ058281.1 · 74,335–74,466 bp · −
rpoA · PQ058281.1 · 77,827–78,840 bp · −
rps11 · PQ058281.1 · 78,912–79,328 bp · −
rpl36 · PQ058281.1 · 79,431–79,544 bp · −
infA · PQ058281.1 · 79,640–79,873 bp · −
rps8 · PQ058281.1 · 79,993–80,403 bp · −
rpl14 · PQ058281.1 · 80,569–80,937 bp · −
rpl16 · PQ058281.1 · 81,065–82,312 bp · −
rps3 · PQ058281.1 · 82,460–83,122 bp · −
rpl22 · PQ058281.1 · 83,149–83,580 bp · −
rps19 · PQ058281.1 · 83,640–83,918 bp · −
rpl2 · PQ058281.1 · 83,974–85,456 bp · −
rpl23 · PQ058281.1 · 85,475–85,756 bp · −
trnI-CAU · PQ058281.1 · 85,916–85,989 bp · −
trnL-CAA · PQ058281.1 · 93,487–93,567 bp · −
ndhB · PQ058281.1 · 94,110–96,321 bp · −
rps7 · PQ058281.1 · 96,596–97,063 bp · −
trnN-GUU · PQ058281.1 · 107,926–107,997 bp · −
ndhF · PQ058281.1 · 109,080–111,320 bp · −
ndhD · PQ058281.1 · 113,848–115,377 bp · −
psaC · PQ058281.1 · 115,476–115,721 bp · −
ndhE · PQ058281.1 · 115,977–116,282 bp · −
ndhG · PQ058281.1 · 116,500–117,030 bp · −
ndhI · PQ058281.1 · 117,387–117,887 bp · −
ndhA · PQ058281.1 · 117,968–120,055 bp · −
ndhH · PQ058281.1 · 120,057–121,238 bp · −
rps15 · PQ058281.1 · 121,329–121,601 bp · −
ycf1 · PQ058281.1 · 121,875–127,517 bp · −
trnR-ACG · PQ058281.1 · 128,364–128,437 bp · −
rrn5 · PQ058281.1 · 128,672–128,792 bp · −
rrn4.5 · PQ058281.1 · 129,040–129,142 bp · −
rrn23 · PQ058281.1 · 129,241–132,053 bp · −
trnA-UGC · PQ058281.1 · 132,223–133,107 bp · −
trnI-GAU · PQ058281.1 · 133,172–134,191 bp · −
ycf68 · PQ058281.1 · 133,743–134,036 bp · −
rrn16 · PQ058281.1 · 134,482–135,972 bp · −
trnV-GAC · PQ058281.1 · 136,200–136,271 bp · −
ycf15 · PQ058281.1 · 142,507–142,755 bp · −
ycf2 · PQ058281.1 · 142,846–149,655 bp · −
psbK · PQ058281.1 · 7,699–7,884 bp · +
psbI · PQ058281.1 · 8,276–8,386 bp · +
trnG-UCC · PQ058281.1 · 9,306–10,053 bp · +
trnR-UCU · PQ058281.1 · 10,228–10,299 bp · +
trnC-GCA · PQ058281.1 · 28,438–28,508 bp · +
petN · PQ058281.1 · 29,207–29,296 bp · +
trnT-GGU · PQ058281.1 · 31,921–31,992 bp · +
psbD · PQ058281.1 · 33,305–34,366 bp · +
psbC · PQ058281.1 · 34,314–35,735 bp · +
psbZ · PQ058281.1 · 36,391–36,579 bp · +
trnG-GCC · PQ058281.1 · 36,838–36,908 bp · +
trnS-GGA · PQ058281.1 · 45,719–45,805 bp · +
trnL-UAA · PQ058281.1 · 47,782–48,350 bp · +
trnF-GAA · PQ058281.1 · 48,651–48,723 bp · +
trnM-CAU · PQ058281.1 · 52,341–52,413 bp · +
rbcL · PQ058281.1 · 55,262–56,725 bp · +
accD · PQ058281.1 · 57,452–58,930 bp · +
psaI · PQ058281.1 · 59,641–59,751 bp · +
ycf4 · PQ058281.1 · 60,206–60,760 bp · +
cemA · PQ058281.1 · 61,503–62,102 bp · +
petA · PQ058281.1 · 62,309–63,271 bp · +
petL · PQ058281.1 · 65,988–66,083 bp · +
petG · PQ058281.1 · 66,259–66,372 bp · +
psaJ · PQ058281.1 · 67,070–67,204 bp · +
rpl33 · PQ058281.1 · 67,687–67,887 bp · +
rps18 · PQ058281.1 · 68,062–68,367 bp · +
rps12 · PQ058281.1 · 137,826–138,616 bp · +
psbB · PQ058281.1 · 72,448–73,974 bp · +
psbT · PQ058281.1 · 74,167–74,274 bp · +
psbH · PQ058281.1 · 74,570–74,791 bp · +
petB · PQ058281.1 · 74,917–76,274 bp · +
petD · PQ058281.1 · 76,463–77,664 bp · +
ycf2 · PQ058281.1 · 86,078–92,887 bp · +
ycf15 · PQ058281.1 · 92,978–93,226 bp · +
trnV-GAC · PQ058281.1 · 99,462–99,533 bp · +
rrn16 · PQ058281.1 · 99,761–101,251 bp · +
trnI-GAU · PQ058281.1 · 101,542–102,561 bp · +
trnA-UGC · PQ058281.1 · 102,626–103,510 bp · +
rrn23 · PQ058281.1 · 103,680–106,492 bp · +
rrn4.5 · PQ058281.1 · 106,591–106,693 bp · +
rrn5 · PQ058281.1 · 106,941–107,061 bp · +
trnR-ACG · PQ058281.1 · 107,296–107,369 bp · +
rpl32 · PQ058281.1 · 111,836–112,012 bp · +
trnL-UAG · PQ058281.1 · 112,452–112,531 bp · +
ccsA · PQ058281.1 · 112,639–113,613 bp · +
trnN-GUU · PQ058281.1 · 127,736–127,807 bp · +
rps7 · PQ058281.1 · 138,670–139,137 bp · +
ndhB · PQ058281.1 · 139,412–141,623 bp · +
trnL-CAA · PQ058281.1 · 142,166–142,246 bp · +
trnI-CAU · PQ058281.1 · 149,744–149,817 bp · +
rpl23 · PQ058281.1 · 149,977–150,258 bp · +
rpl2 · PQ058281.1 · 150,277–151,759 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria woodii
ANNOTATED PLASTOME
PQ058281.1
151,856 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37964 75928 113892 151856 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 268 1326 1059 Locate
trnK-UUU gene − 1559 4148 2590 Locate
matK gene − 1854 3392 1539 Locate
rps16 gene − 5042 6217 1176 Locate
trnQ-UUG gene − 7302 7373 72 Locate
psbK gene + 7699 7884 186 Locate
psbI gene + 8276 8386 111 Locate
trnS-GCU gene − 8507 8594 88 Locate
trnG-UCC gene + 9306 10053 748 Locate
trnR-UCU gene + 10228 10299 72 Locate
atpA gene − 10396 11919 1524 Locate
atpF gene − 12011 13240 1230 Locate
atpH gene − 13607 13852 246 Locate
atpI gene − 14838 15581 744 Locate
rps2 gene − 15931 16767 837 Locate
rpoC2 gene − 16858 21063 4206 Locate
rpoC1 gene − 21218 24045 2828 Locate
rpoB gene − 24072 27284 3213 Locate
trnC-GCA gene + 28438 28508 71 Locate
petN gene + 29207 29296 90 Locate
psbM gene − 30313 30417 105 Locate
trnD-GUC gene − 30943 31016 74 Locate
trnY-GUA gene − 31130 31213 84 Locate
trnE-UUC gene − 31273 31345 73 Locate
trnT-GGU gene + 31921 31992 72 Locate
psbD gene + 33305 34366 1062 Locate
psbC gene + 34314 35735 1422 Locate
trnS-UGA gene − 35980 36071 92 Locate
psbZ gene + 36391 36579 189 Locate
trnG-GCC gene + 36838 36908 71 Locate
trnfM-CAU gene − 37054 37127 74 Locate
rps14 gene − 37277 37579 303 Locate
psaB gene − 37707 39911 2205 Locate
psaA gene − 39937 42189 2253 Locate
ycf3 gene − 42890 44827 1938 Locate
trnS-GGA gene + 45719 45805 87 Locate
rps4 gene − 46089 46694 606 Locate
trnT-UGU gene − 47028 47100 73 Locate
trnL-UAA gene + 47782 48350 569 Locate
trnF-GAA gene + 48651 48723 73 Locate
ndhJ gene − 49377 49853 477 Locate
ndhK gene − 49961 50638 678 Locate
ndhC gene − 50691 51053 363 Locate
trnV-UAC gene − 51507 52160 654 Locate
trnM-CAU gene + 52341 52413 73 Locate
atpE gene − 52622 53023 402 Locate
atpB gene − 53020 54516 1497 Locate
rbcL gene + 55262 56725 1464 Locate
accD gene + 57452 58930 1479 Locate
psaI gene + 59641 59751 111 Locate
ycf4 gene + 60206 60760 555 Locate
cemA gene + 61503 62102 600 Locate
petA gene + 62309 63271 963 Locate
psbJ gene − 64301 64423 123 Locate
psbL gene − 64557 64673 117 Locate
psbF gene − 64697 64816 120 Locate
psbE gene − 64831 65082 252 Locate
petL gene + 65988 66083 96 Locate
petG gene + 66259 66372 114 Locate
trnW-CCA gene − 66491 66564 74 Locate
trnP-UGG gene − 66724 66797 74 Locate
psaJ gene + 67070 67204 135 Locate
rpl33 gene + 67687 67887 201 Locate
rps18 gene + 68062 68367 306 Locate
rpl20 gene − 68595 68981 387 Locate
rps12 gene − 69778 69891 114 Locate
clpP gene − 70034 71979 1946 Locate
psbB gene + 72448 73974 1527 Locate
psbT gene + 74167 74274 108 Locate
psbN gene − 74335 74466 132 Locate
psbH gene + 74570 74791 222 Locate
petB gene + 74917 76274 1358 Locate
petD gene + 76463 77664 1202 Locate
rpoA gene − 77827 78840 1014 Locate
rps11 gene − 78912 79328 417 Locate
rpl36 gene − 79431 79544 114 Locate
infA gene − 79640 79873 234 Locate
rps8 gene − 79993 80403 411 Locate
rpl14 gene − 80569 80937 369 Locate
rpl16 gene − 81065 82312 1248 Locate
rps3 gene − 82460 83122 663 Locate
rpl22 gene − 83149 83580 432 Locate
rps19 gene − 83640 83918 279 Locate
rpl2 gene − 83974 85456 1483 Locate
rpl23 gene − 85475 85756 282 Locate
trnI-CAU gene − 85916 85989 74 Locate
ycf2 gene + 86078 92887 6810 Locate
ycf15 gene + 92978 93226 249 Locate
trnL-CAA gene − 93487 93567 81 Locate
ndhB gene − 94110 96321 2212 Locate
rps7 gene − 96596 97063 468 Locate
rps12 gene − 97117 97907 791 Locate
trnV-GAC gene + 99462 99533 72 Locate
rrn16 gene + 99761 101251 1491 Locate
trnI-GAU gene + 101542 102561 1020 Locate
trnA-UGC gene + 102626 103510 885 Locate
rrn23 gene + 103680 106492 2813 Locate
rrn4.5 gene + 106591 106693 103 Locate
rrn5 gene + 106941 107061 121 Locate
trnR-ACG gene + 107296 107369 74 Locate
trnN-GUU gene − 107926 107997 72 Locate
ndhF gene − 109080 111320 2241 Locate
rpl32 gene + 111836 112012 177 Locate
trnL-UAG gene + 112452 112531 80 Locate
ccsA gene + 112639 113613 975 Locate
ndhD gene − 113848 115377 1530 Locate
psaC gene − 115476 115721 246 Locate
ndhE gene − 115977 116282 306 Locate
ndhG gene − 116500 117030 531 Locate
ndhI gene − 117387 117887 501 Locate
ndhA gene − 117968 120055 2088 Locate
ndhH gene − 120057 121238 1182 Locate
rps15 gene − 121329 121601 273 Locate
ycf1 gene − 121875 127517 5643 Locate
trnN-GUU gene + 127736 127807 72 Locate
trnR-ACG gene − 128364 128437 74 Locate
rrn5 gene − 128672 128792 121 Locate
rrn4.5 gene − 129040 129142 103 Locate
rrn23 gene − 129241 132053 2813 Locate
trnA-UGC gene − 132223 133107 885 Locate
trnI-GAU gene − 133172 134191 1020 Locate
ycf68 gene − 133743 134036 294 Locate
rrn16 gene − 134482 135972 1491 Locate
trnV-GAC gene − 136200 136271 72 Locate
rps12 gene + 137826 138616 791 Locate
rps7 gene + 138670 139137 468 Locate
ndhB gene + 139412 141623 2212 Locate
trnL-CAA gene + 142166 142246 81 Locate
ycf15 gene − 142507 142755 249 Locate
ycf2 gene − 142846 149655 6810 Locate
trnI-CAU gene + 149744 149817 74 Locate
rpl23 gene + 149977 150258 282 Locate
rpl2 gene + 150277 151759 1483 Locate
Status Available
Accession PQ058281.1
Length 151,856 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources