Scutellaria wulingshanensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059355.1 · 3–76 bp · −
psbA · PQ059355.1 · 380–1,438 bp · −
trnK-UUU · PQ059355.1 · 1,671–4,258 bp · −
matK · PQ059355.1 · 1,966–3,501 bp · −
rps16 · PQ059355.1 · 5,162–6,330 bp · −
trnQ-UUG · PQ059355.1 · 7,461–7,532 bp · −
trnS-GCU · PQ059355.1 · 8,661–8,748 bp · −
atpA · PQ059355.1 · 10,538–12,061 bp · −
atpF · PQ059355.1 · 12,135–13,362 bp · −
atpH · PQ059355.1 · 13,731–13,976 bp · −
atpI · PQ059355.1 · 14,967–15,710 bp · −
rps2 · PQ059355.1 · 16,059–16,769 bp · −
rpoC2 · PQ059355.1 · 16,986–21,191 bp · −
rpoC1 · PQ059355.1 · 21,346–24,182 bp · −
rpoB · PQ059355.1 · 24,209–27,421 bp · −
psbM · PQ059355.1 · 30,483–30,587 bp · −
trnD-GUC · PQ059355.1 · 31,113–31,186 bp · −
trnY-GUA · PQ059355.1 · 31,300–31,383 bp · −
trnE-UUC · PQ059355.1 · 31,443–31,515 bp · −
trnS-UGA · PQ059355.1 · 36,145–36,236 bp · −
trnfM-CAU · PQ059355.1 · 37,232–37,305 bp · −
rps14 · PQ059355.1 · 37,455–37,757 bp · −
psaB · PQ059355.1 · 37,885–40,089 bp · −
psaA · PQ059355.1 · 40,115–42,367 bp · −
ycf3 · PQ059355.1 · 43,044–44,967 bp · −
rps4 · PQ059355.1 · 46,226–46,831 bp · −
trnT-UGU · PQ059355.1 · 47,170–47,242 bp · −
ndhJ · PQ059355.1 · 49,524–50,000 bp · −
ndhK · PQ059355.1 · 50,108–50,785 bp · −
ndhC · PQ059355.1 · 50,838–51,200 bp · −
trnV-UAC · PQ059355.1 · 52,197–52,849 bp · −
atpE · PQ059355.1 · 53,312–53,713 bp · −
atpB · PQ059355.1 · 53,710–55,197 bp · −
psbJ · PQ059355.1 · 64,953–65,075 bp · −
psbL · PQ059355.1 · 65,209–65,325 bp · −
psbF · PQ059355.1 · 65,349–65,468 bp · −
psbE · PQ059355.1 · 65,483–65,734 bp · −
trnW-CCA · PQ059355.1 · 67,145–67,218 bp · −
trnP-UGG · PQ059355.1 · 67,388–67,461 bp · −
rpl20 · PQ059355.1 · 69,257–69,643 bp · −
rps12 · PQ059355.1 · 70,433–70,558 bp · −
rps12 · PQ059355.1 · 97,779–98,569 bp · −
clpP · PQ059355.1 · 70,701–72,635 bp · −
psbN · PQ059355.1 · 75,003–75,134 bp · −
rpoA · PQ059355.1 · 78,502–79,515 bp · −
rps11 · PQ059355.1 · 79,587–80,003 bp · −
rpl36 · PQ059355.1 · 80,105–80,218 bp · −
infA · PQ059355.1 · 80,314–80,547 bp · −
rps8 · PQ059355.1 · 80,667–81,077 bp · −
rpl14 · PQ059355.1 · 81,236–81,604 bp · −
rpl16 · PQ059355.1 · 81,731–82,974 bp · −
rps3 · PQ059355.1 · 83,129–83,791 bp · −
rpl22 · PQ059355.1 · 83,793–84,248 bp · −
rps19 · PQ059355.1 · 84,308–84,586 bp · −
rpl2 · PQ059355.1 · 84,641–86,123 bp · −
rpl23 · PQ059355.1 · 86,142–86,423 bp · −
trnI-CAU · PQ059355.1 · 86,583–86,656 bp · −
trnL-CAA · PQ059355.1 · 94,149–94,229 bp · −
ndhB · PQ059355.1 · 94,772–96,929 bp · −
rps7 · PQ059355.1 · 97,258–97,725 bp · −
trnN-GUU · PQ059355.1 · 108,610–108,681 bp · −
ndhF · PQ059355.1 · 109,751–111,991 bp · −
ndhD · PQ059355.1 · 114,514–116,037 bp · −
psaC · PQ059355.1 · 116,136–116,381 bp · −
ndhE · PQ059355.1 · 116,643–116,948 bp · −
ndhG · PQ059355.1 · 117,169–117,699 bp · −
ndhI · PQ059355.1 · 118,063–118,563 bp · −
ndhA · PQ059355.1 · 118,644–120,735 bp · −
ndhH · PQ059355.1 · 120,737–121,918 bp · −
rps15 · PQ059355.1 · 122,021–122,353 bp · −
ycf1 · PQ059355.1 · 122,564–128,317 bp · −
trnR-ACG · PQ059355.1 · 129,048–129,121 bp · −
rrn5 · PQ059355.1 · 129,356–129,476 bp · −
rrn4.5 · PQ059355.1 · 129,724–129,826 bp · −
rrn23 · PQ059355.1 · 129,925–132,737 bp · −
trnA-UGC · PQ059355.1 · 132,907–133,791 bp · −
trnI-GAU · PQ059355.1 · 133,856–134,876 bp · −
ycf68 · PQ059355.1 · 134,482–134,721 bp · −
rrn16 · PQ059355.1 · 135,175–136,665 bp · −
trnV-GAC · PQ059355.1 · 136,893–136,964 bp · −
ycf15 · PQ059355.1 · 143,218–143,466 bp · −
ycf2 · PQ059355.1 · 143,557–150,366 bp · −
psbK · PQ059355.1 · 7,857–8,042 bp · +
psbI · PQ059355.1 · 8,433–8,543 bp · +
trnG-UCC · PQ059355.1 · 9,436–10,195 bp · +
trnR-UCU · PQ059355.1 · 10,370–10,441 bp · +
trnC-GCA · PQ059355.1 · 28,585–28,655 bp · +
petN · PQ059355.1 · 29,366–29,455 bp · +
trnT-GGU · PQ059355.1 · 32,098–32,169 bp · +
psbD · PQ059355.1 · 33,471–34,532 bp · +
psbC · PQ059355.1 · 34,480–35,901 bp · +
psbZ · PQ059355.1 · 36,556–36,744 bp · +
trnG-GCC · PQ059355.1 · 37,016–37,086 bp · +
trnS-GGA · PQ059355.1 · 45,854–45,940 bp · +
trnL-UAA · PQ059355.1 · 47,928–48,496 bp · +
trnF-GAA · PQ059355.1 · 48,803–48,875 bp · +
trnM-CAU · PQ059355.1 · 53,030–53,102 bp · +
rbcL · PQ059355.1 · 55,949–57,412 bp · +
accD · PQ059355.1 · 58,123–59,589 bp · +
psaI · PQ059355.1 · 60,320–60,430 bp · +
ycf4 · PQ059355.1 · 60,864–61,418 bp · +
cemA · PQ059355.1 · 62,167–62,766 bp · +
petA · PQ059355.1 · 62,973–63,935 bp · +
petL · PQ059355.1 · 66,643–66,738 bp · +
petG · PQ059355.1 · 66,913–67,026 bp · +
psaJ · PQ059355.1 · 67,733–67,867 bp · +
rpl33 · PQ059355.1 · 68,339–68,539 bp · +
rps18 · PQ059355.1 · 68,714–69,019 bp · +
rps12 · PQ059355.1 · 138,542–139,332 bp · +
psbB · PQ059355.1 · 73,110–74,636 bp · +
psbT · PQ059355.1 · 74,828–74,929 bp · +
psbH · PQ059355.1 · 75,238–75,459 bp · +
petB · PQ059355.1 · 75,584–76,949 bp · +
petD · PQ059355.1 · 77,138–78,339 bp · +
ycf2 · PQ059355.1 · 86,745–93,554 bp · +
ycf15 · PQ059355.1 · 93,645–93,893 bp · +
trnV-GAC · PQ059355.1 · 100,147–100,218 bp · +
rrn16 · PQ059355.1 · 100,446–101,936 bp · +
trnI-GAU · PQ059355.1 · 102,235–103,255 bp · +
trnA-UGC · PQ059355.1 · 103,320–104,204 bp · +
rrn23 · PQ059355.1 · 104,374–107,186 bp · +
rrn4.5 · PQ059355.1 · 107,285–107,387 bp · +
rrn5 · PQ059355.1 · 107,635–107,755 bp · +
trnR-ACG · PQ059355.1 · 107,990–108,063 bp · +
rpl32 · PQ059355.1 · 112,508–112,684 bp · +
trnL-UAG · PQ059355.1 · 113,131–113,210 bp · +
ccsA · PQ059355.1 · 113,307–114,281 bp · +
trnN-GUU · PQ059355.1 · 128,430–128,501 bp · +
rps7 · PQ059355.1 · 139,386–139,853 bp · +
ndhB · PQ059355.1 · 140,182–142,339 bp · +
trnL-CAA · PQ059355.1 · 142,882–142,962 bp · +
trnI-CAU · PQ059355.1 · 150,455–150,528 bp · +
rpl23 · PQ059355.1 · 150,688–150,969 bp · +
rpl2 · PQ059355.1 · 150,988–152,470 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria wulingshanensis
ANNOTATED PLASTOME
PQ059355.1
152,565 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38141 76282 114424 152565 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5162 6330 1169 Locate
trnQ-UUG gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8433 8543 111 Locate
trnS-GCU gene − 8661 8748 88 Locate
trnG-UCC gene + 9436 10195 760 Locate
trnR-UCU gene + 10370 10441 72 Locate
atpA gene − 10538 12061 1524 Locate
atpF gene − 12135 13362 1228 Locate
atpH gene − 13731 13976 246 Locate
atpI gene − 14967 15710 744 Locate
rps2 gene − 16059 16769 711 Locate
rpoC2 gene − 16986 21191 4206 Locate
rpoC1 gene − 21346 24182 2837 Locate
rpoB gene − 24209 27421 3213 Locate
trnC-GCA gene + 28585 28655 71 Locate
petN gene + 29366 29455 90 Locate
psbM gene − 30483 30587 105 Locate
trnD-GUC gene − 31113 31186 74 Locate
trnY-GUA gene − 31300 31383 84 Locate
trnE-UUC gene − 31443 31515 73 Locate
trnT-GGU gene + 32098 32169 72 Locate
psbD gene + 33471 34532 1062 Locate
psbC gene + 34480 35901 1422 Locate
trnS-UGA gene − 36145 36236 92 Locate
psbZ gene + 36556 36744 189 Locate
trnG-GCC gene + 37016 37086 71 Locate
trnfM-CAU gene − 37232 37305 74 Locate
rps14 gene − 37455 37757 303 Locate
psaB gene − 37885 40089 2205 Locate
psaA gene − 40115 42367 2253 Locate
ycf3 gene − 43044 44967 1924 Locate
trnS-GGA gene + 45854 45940 87 Locate
rps4 gene − 46226 46831 606 Locate
trnT-UGU gene − 47170 47242 73 Locate
trnL-UAA gene + 47928 48496 569 Locate
trnF-GAA gene + 48803 48875 73 Locate
ndhJ gene − 49524 50000 477 Locate
ndhK gene − 50108 50785 678 Locate
ndhC gene − 50838 51200 363 Locate
trnV-UAC gene − 52197 52849 653 Locate
trnM-CAU gene + 53030 53102 73 Locate
atpE gene − 53312 53713 402 Locate
atpB gene − 53710 55197 1488 Locate
rbcL gene + 55949 57412 1464 Locate
accD gene + 58123 59589 1467 Locate
psaI gene + 60320 60430 111 Locate
ycf4 gene + 60864 61418 555 Locate
cemA gene + 62167 62766 600 Locate
petA gene + 62973 63935 963 Locate
psbJ gene − 64953 65075 123 Locate
psbL gene − 65209 65325 117 Locate
psbF gene − 65349 65468 120 Locate
psbE gene − 65483 65734 252 Locate
petL gene + 66643 66738 96 Locate
petG gene + 66913 67026 114 Locate
trnW-CCA gene − 67145 67218 74 Locate
trnP-UGG gene − 67388 67461 74 Locate
psaJ gene + 67733 67867 135 Locate
rpl33 gene + 68339 68539 201 Locate
rps18 gene + 68714 69019 306 Locate
rpl20 gene − 69257 69643 387 Locate
rps12 gene − 70433 70558 126 Locate
clpP gene − 70701 72635 1935 Locate
psbB gene + 73110 74636 1527 Locate
psbT gene + 74828 74929 102 Locate
psbN gene − 75003 75134 132 Locate
psbH gene + 75238 75459 222 Locate
petB gene + 75584 76949 1366 Locate
petD gene + 77138 78339 1202 Locate
rpoA gene − 78502 79515 1014 Locate
rps11 gene − 79587 80003 417 Locate
rpl36 gene − 80105 80218 114 Locate
infA gene − 80314 80547 234 Locate
rps8 gene − 80667 81077 411 Locate
rpl14 gene − 81236 81604 369 Locate
rpl16 gene − 81731 82974 1244 Locate
rps3 gene − 83129 83791 663 Locate
rpl22 gene − 83793 84248 456 Locate
rps19 gene − 84308 84586 279 Locate
rpl2 gene − 84641 86123 1483 Locate
rpl23 gene − 86142 86423 282 Locate
trnI-CAU gene − 86583 86656 74 Locate
ycf2 gene + 86745 93554 6810 Locate
ycf15 gene + 93645 93893 249 Locate
trnL-CAA gene − 94149 94229 81 Locate
ndhB gene − 94772 96929 2158 Locate
rps7 gene − 97258 97725 468 Locate
rps12 gene − 97779 98569 791 Locate
trnV-GAC gene + 100147 100218 72 Locate
rrn16 gene + 100446 101936 1491 Locate
trnI-GAU gene + 102235 103255 1021 Locate
trnA-UGC gene + 103320 104204 885 Locate
rrn23 gene + 104374 107186 2813 Locate
rrn4.5 gene + 107285 107387 103 Locate
rrn5 gene + 107635 107755 121 Locate
trnR-ACG gene + 107990 108063 74 Locate
trnN-GUU gene − 108610 108681 72 Locate
ndhF gene − 109751 111991 2241 Locate
rpl32 gene + 112508 112684 177 Locate
trnL-UAG gene + 113131 113210 80 Locate
ccsA gene + 113307 114281 975 Locate
ndhD gene − 114514 116037 1524 Locate
psaC gene − 116136 116381 246 Locate
ndhE gene − 116643 116948 306 Locate
ndhG gene − 117169 117699 531 Locate
ndhI gene − 118063 118563 501 Locate
ndhA gene − 118644 120735 2092 Locate
ndhH gene − 120737 121918 1182 Locate
rps15 gene − 122021 122353 333 Locate
ycf1 gene − 122564 128317 5754 Locate
trnN-GUU gene + 128430 128501 72 Locate
trnR-ACG gene − 129048 129121 74 Locate
rrn5 gene − 129356 129476 121 Locate
rrn4.5 gene − 129724 129826 103 Locate
rrn23 gene − 129925 132737 2813 Locate
trnA-UGC gene − 132907 133791 885 Locate
trnI-GAU gene − 133856 134876 1021 Locate
ycf68 gene − 134482 134721 240 Locate
rrn16 gene − 135175 136665 1491 Locate
trnV-GAC gene − 136893 136964 72 Locate
rps12 gene + 138542 139332 791 Locate
rps7 gene + 139386 139853 468 Locate
ndhB gene + 140182 142339 2158 Locate
trnL-CAA gene + 142882 142962 81 Locate
ycf15 gene − 143218 143466 249 Locate
ycf2 gene − 143557 150366 6810 Locate
trnI-CAU gene + 150455 150528 74 Locate
rpl23 gene + 150688 150969 282 Locate
rpl2 gene + 150988 152470 1483 Locate
Status Available
Accession PQ059355.1
Length 152,565 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources