Scutellaria x churchilliana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058261.1 · 3–76 bp · −
psbA · PQ058261.1 · 379–1,437 bp · −
trnK-UUU · PQ058261.1 · 1,670–4,257 bp · −
matK · PQ058261.1 · 1,965–3,500 bp · −
rps16 · PQ058261.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ058261.1 · 7,374–7,445 bp · −
trnS-GCU · PQ058261.1 · 8,581–8,668 bp · −
atpA · PQ058261.1 · 10,466–11,989 bp · −
atpF · PQ058261.1 · 12,063–13,290 bp · −
atpH · PQ058261.1 · 13,659–13,904 bp · −
atpI · PQ058261.1 · 14,901–15,644 bp · −
rps2 · PQ058261.1 · 15,986–16,822 bp · −
rpoC2 · PQ058261.1 · 16,913–21,118 bp · −
rpoC1 · PQ058261.1 · 21,273–24,108 bp · −
rpoB · PQ058261.1 · 24,135–27,347 bp · −
psbM · PQ058261.1 · 30,396–30,500 bp · −
trnD-GUC · PQ058261.1 · 31,026–31,099 bp · −
trnY-GUA · PQ058261.1 · 31,213–31,296 bp · −
trnE-UUC · PQ058261.1 · 31,356–31,428 bp · −
trnS-UGA · PQ058261.1 · 36,057–36,148 bp · −
trnfM-CAU · PQ058261.1 · 37,134–37,207 bp · −
rps14 · PQ058261.1 · 37,357–37,659 bp · −
psaB · PQ058261.1 · 37,787–39,991 bp · −
psaA · PQ058261.1 · 40,017–42,269 bp · −
ycf3 · PQ058261.1 · 42,946–44,868 bp · −
rps4 · PQ058261.1 · 46,115–46,720 bp · −
trnT-UGU · PQ058261.1 · 47,064–47,136 bp · −
ndhJ · PQ058261.1 · 49,428–49,904 bp · −
ndhK · PQ058261.1 · 50,012–50,689 bp · −
ndhC · PQ058261.1 · 50,742–51,104 bp · −
trnV-UAC · PQ058261.1 · 52,100–52,752 bp · −
atpE · PQ058261.1 · 53,215–53,616 bp · −
atpB · PQ058261.1 · 53,613–55,100 bp · −
psbJ · PQ058261.1 · 64,824–64,946 bp · −
psbL · PQ058261.1 · 65,080–65,196 bp · −
psbF · PQ058261.1 · 65,220–65,339 bp · −
psbE · PQ058261.1 · 65,354–65,605 bp · −
trnW-CCA · PQ058261.1 · 67,015–67,088 bp · −
trnP-UGG · PQ058261.1 · 67,258–67,331 bp · −
rpl20 · PQ058261.1 · 69,127–69,513 bp · −
rps12 · PQ058261.1 · 70,314–70,427 bp · −
rps12 · PQ058261.1 · 97,637–98,427 bp · −
clpP · PQ058261.1 · 70,551–72,486 bp · −
psbN · PQ058261.1 · 74,849–74,980 bp · −
rpoA · PQ058261.1 · 78,350–79,363 bp · −
rps11 · PQ058261.1 · 79,435–79,851 bp · −
rpl36 · PQ058261.1 · 79,953–80,066 bp · −
infA · PQ058261.1 · 80,162–80,395 bp · −
rps8 · PQ058261.1 · 80,517–80,927 bp · −
rpl14 · PQ058261.1 · 81,094–81,462 bp · −
rpl16 · PQ058261.1 · 81,589–82,832 bp · −
rps3 · PQ058261.1 · 82,987–83,649 bp · −
rpl22 · PQ058261.1 · 83,651–84,106 bp · −
rps19 · PQ058261.1 · 84,166–84,444 bp · −
rpl2 · PQ058261.1 · 84,499–85,981 bp · −
rpl23 · PQ058261.1 · 86,000–86,281 bp · −
trnI-CAU · PQ058261.1 · 86,441–86,514 bp · −
trnL-CAA · PQ058261.1 · 94,007–94,087 bp · −
ndhB · PQ058261.1 · 94,630–96,841 bp · −
rps7 · PQ058261.1 · 97,116–97,583 bp · −
trnN-GUU · PQ058261.1 · 108,463–108,534 bp · −
ndhF · PQ058261.1 · 109,611–111,851 bp · −
ndhD · PQ058261.1 · 114,366–115,868 bp · −
psaC · PQ058261.1 · 115,988–116,233 bp · −
ndhE · PQ058261.1 · 116,490–116,795 bp · −
ndhG · PQ058261.1 · 116,937–117,467 bp · −
ndhI · PQ058261.1 · 117,832–118,332 bp · −
ndhA · PQ058261.1 · 118,413–120,514 bp · −
ndhH · PQ058261.1 · 120,516–121,727 bp · −
rps15 · PQ058261.1 · 121,800–122,072 bp · −
ycf1 · PQ058261.1 · 122,339–127,999 bp · −
trnR-ACG · PQ058261.1 · 128,836–128,909 bp · −
rrn5 · PQ058261.1 · 129,144–129,264 bp · −
rrn4.5 · PQ058261.1 · 129,512–129,614 bp · −
rrn23 · PQ058261.1 · 129,713–132,525 bp · −
trnA-UGC · PQ058261.1 · 132,695–133,580 bp · −
trnI-GAU · PQ058261.1 · 133,645–134,665 bp · −
ycf68 · PQ058261.1 · 134,271–134,510 bp · −
rrn16 · PQ058261.1 · 134,964–136,454 bp · −
trnV-GAC · PQ058261.1 · 136,682–136,753 bp · −
ycf15 · PQ058261.1 · 143,001–143,249 bp · −
ycf2 · PQ058261.1 · 143,340–150,149 bp · −
psbK · PQ058261.1 · 7,770–7,955 bp · +
psbI · PQ058261.1 · 8,346–8,456 bp · +
trnG-UCC · PQ058261.1 · 9,359–10,123 bp · +
trnR-UCU · PQ058261.1 · 10,298–10,369 bp · +
trnC-GCA · PQ058261.1 · 28,511–28,581 bp · +
petN · PQ058261.1 · 29,292–29,381 bp · +
trnT-GGU · PQ058261.1 · 32,011–32,082 bp · +
psbD · PQ058261.1 · 33,391–34,452 bp · +
psbC · PQ058261.1 · 34,400–35,821 bp · +
psbZ · PQ058261.1 · 36,459–36,647 bp · +
trnG-GCC · PQ058261.1 · 36,919–36,989 bp · +
trnS-GGA · PQ058261.1 · 45,743–45,829 bp · +
trnL-UAA · PQ058261.1 · 47,820–48,400 bp · +
trnF-GAA · PQ058261.1 · 48,707–48,779 bp · +
trnM-CAU · PQ058261.1 · 52,933–53,005 bp · +
rbcL · PQ058261.1 · 55,846–57,309 bp · +
accD · PQ058261.1 · 58,020–59,486 bp · +
psaI · PQ058261.1 · 60,218–60,328 bp · +
ycf4 · PQ058261.1 · 60,762–61,316 bp · +
cemA · PQ058261.1 · 62,065–62,664 bp · +
petA · PQ058261.1 · 62,871–63,833 bp · +
petL · PQ058261.1 · 66,513–66,608 bp · +
petG · PQ058261.1 · 66,783–66,896 bp · +
psaJ · PQ058261.1 · 67,540–67,737 bp · +
rpl33 · PQ058261.1 · 68,209–68,409 bp · +
rps18 · PQ058261.1 · 68,584–68,889 bp · +
rps12 · PQ058261.1 · 138,325–139,115 bp · +
psbB · PQ058261.1 · 72,956–74,482 bp · +
psbT · PQ058261.1 · 74,674–74,775 bp · +
psbH · PQ058261.1 · 75,084–75,305 bp · +
petB · PQ058261.1 · 75,430–76,797 bp · +
petD · PQ058261.1 · 76,986–78,187 bp · +
ycf2 · PQ058261.1 · 86,603–93,412 bp · +
ycf15 · PQ058261.1 · 93,503–93,751 bp · +
trnV-GAC · PQ058261.1 · 99,999–100,070 bp · +
rrn16 · PQ058261.1 · 100,298–101,788 bp · +
trnI-GAU · PQ058261.1 · 102,087–103,107 bp · +
trnA-UGC · PQ058261.1 · 103,172–104,057 bp · +
rrn23 · PQ058261.1 · 104,227–107,039 bp · +
rrn4.5 · PQ058261.1 · 107,138–107,240 bp · +
rrn5 · PQ058261.1 · 107,488–107,608 bp · +
trnR-ACG · PQ058261.1 · 107,843–107,916 bp · +
rpl32 · PQ058261.1 · 112,362–112,538 bp · +
trnL-UAG · PQ058261.1 · 112,982–113,061 bp · +
ccsA · PQ058261.1 · 113,093–114,133 bp · +
trnN-GUU · PQ058261.1 · 128,218–128,289 bp · +
rps7 · PQ058261.1 · 139,169–139,636 bp · +
ndhB · PQ058261.1 · 139,911–142,122 bp · +
trnL-CAA · PQ058261.1 · 142,665–142,745 bp · +
trnI-CAU · PQ058261.1 · 150,238–150,311 bp · +
rpl23 · PQ058261.1 · 150,471–150,752 bp · +
rpl2 · PQ058261.1 · 150,771–152,253 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria x churchilliana
ANNOTATED PLASTOME
PQ058261.1
152,348 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38087 76174 114261 152348 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1670 4257 2588 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7374 7445 72 Locate
psbK gene + 7770 7955 186 Locate
psbI gene + 8346 8456 111 Locate
trnS-GCU gene − 8581 8668 88 Locate
trnG-UCC gene + 9359 10123 765 Locate
trnR-UCU gene + 10298 10369 72 Locate
atpA gene − 10466 11989 1524 Locate
atpF gene − 12063 13290 1228 Locate
atpH gene − 13659 13904 246 Locate
atpI gene − 14901 15644 744 Locate
rps2 gene − 15986 16822 837 Locate
rpoC2 gene − 16913 21118 4206 Locate
rpoC1 gene − 21273 24108 2836 Locate
rpoB gene − 24135 27347 3213 Locate
trnC-GCA gene + 28511 28581 71 Locate
petN gene + 29292 29381 90 Locate
psbM gene − 30396 30500 105 Locate
trnD-GUC gene − 31026 31099 74 Locate
trnY-GUA gene − 31213 31296 84 Locate
trnE-UUC gene − 31356 31428 73 Locate
trnT-GGU gene + 32011 32082 72 Locate
psbD gene + 33391 34452 1062 Locate
psbC gene + 34400 35821 1422 Locate
trnS-UGA gene − 36057 36148 92 Locate
psbZ gene + 36459 36647 189 Locate
trnG-GCC gene + 36919 36989 71 Locate
trnfM-CAU gene − 37134 37207 74 Locate
rps14 gene − 37357 37659 303 Locate
psaB gene − 37787 39991 2205 Locate
psaA gene − 40017 42269 2253 Locate
ycf3 gene − 42946 44868 1923 Locate
trnS-GGA gene + 45743 45829 87 Locate
rps4 gene − 46115 46720 606 Locate
trnT-UGU gene − 47064 47136 73 Locate
trnL-UAA gene + 47820 48400 581 Locate
trnF-GAA gene + 48707 48779 73 Locate
ndhJ gene − 49428 49904 477 Locate
ndhK gene − 50012 50689 678 Locate
ndhC gene − 50742 51104 363 Locate
trnV-UAC gene − 52100 52752 653 Locate
trnM-CAU gene + 52933 53005 73 Locate
atpE gene − 53215 53616 402 Locate
atpB gene − 53613 55100 1488 Locate
rbcL gene + 55846 57309 1464 Locate
accD gene + 58020 59486 1467 Locate
psaI gene + 60218 60328 111 Locate
ycf4 gene + 60762 61316 555 Locate
cemA gene + 62065 62664 600 Locate
petA gene + 62871 63833 963 Locate
psbJ gene − 64824 64946 123 Locate
psbL gene − 65080 65196 117 Locate
psbF gene − 65220 65339 120 Locate
psbE gene − 65354 65605 252 Locate
petL gene + 66513 66608 96 Locate
petG gene + 66783 66896 114 Locate
trnW-CCA gene − 67015 67088 74 Locate
trnP-UGG gene − 67258 67331 74 Locate
psaJ gene + 67540 67737 198 Locate
rpl33 gene + 68209 68409 201 Locate
rps18 gene + 68584 68889 306 Locate
rpl20 gene − 69127 69513 387 Locate
rps12 gene − 70314 70427 114 Locate
clpP gene − 70551 72486 1936 Locate
psbB gene + 72956 74482 1527 Locate
psbT gene + 74674 74775 102 Locate
psbN gene − 74849 74980 132 Locate
psbH gene + 75084 75305 222 Locate
petB gene + 75430 76797 1368 Locate
petD gene + 76986 78187 1202 Locate
rpoA gene − 78350 79363 1014 Locate
rps11 gene − 79435 79851 417 Locate
rpl36 gene − 79953 80066 114 Locate
infA gene − 80162 80395 234 Locate
rps8 gene − 80517 80927 411 Locate
rpl14 gene − 81094 81462 369 Locate
rpl16 gene − 81589 82832 1244 Locate
rps3 gene − 82987 83649 663 Locate
rpl22 gene − 83651 84106 456 Locate
rps19 gene − 84166 84444 279 Locate
rpl2 gene − 84499 85981 1483 Locate
rpl23 gene − 86000 86281 282 Locate
trnI-CAU gene − 86441 86514 74 Locate
ycf2 gene + 86603 93412 6810 Locate
ycf15 gene + 93503 93751 249 Locate
trnL-CAA gene − 94007 94087 81 Locate
ndhB gene − 94630 96841 2212 Locate
rps7 gene − 97116 97583 468 Locate
rps12 gene − 97637 98427 791 Locate
trnV-GAC gene + 99999 100070 72 Locate
rrn16 gene + 100298 101788 1491 Locate
trnI-GAU gene + 102087 103107 1021 Locate
trnA-UGC gene + 103172 104057 886 Locate
rrn23 gene + 104227 107039 2813 Locate
rrn4.5 gene + 107138 107240 103 Locate
rrn5 gene + 107488 107608 121 Locate
trnR-ACG gene + 107843 107916 74 Locate
trnN-GUU gene − 108463 108534 72 Locate
ndhF gene − 109611 111851 2241 Locate
rpl32 gene + 112362 112538 177 Locate
trnL-UAG gene + 112982 113061 80 Locate
ccsA gene + 113093 114133 1041 Locate
ndhD gene − 114366 115868 1503 Locate
psaC gene − 115988 116233 246 Locate
ndhE gene − 116490 116795 306 Locate
ndhG gene − 116937 117467 531 Locate
ndhI gene − 117832 118332 501 Locate
ndhA gene − 118413 120514 2102 Locate
ndhH gene − 120516 121727 1212 Locate
rps15 gene − 121800 122072 273 Locate
ycf1 gene − 122339 127999 5661 Locate
trnN-GUU gene + 128218 128289 72 Locate
trnR-ACG gene − 128836 128909 74 Locate
rrn5 gene − 129144 129264 121 Locate
rrn4.5 gene − 129512 129614 103 Locate
rrn23 gene − 129713 132525 2813 Locate
trnA-UGC gene − 132695 133580 886 Locate
trnI-GAU gene − 133645 134665 1021 Locate
ycf68 gene − 134271 134510 240 Locate
rrn16 gene − 134964 136454 1491 Locate
trnV-GAC gene − 136682 136753 72 Locate
rps12 gene + 138325 139115 791 Locate
rps7 gene + 139169 139636 468 Locate
ndhB gene + 139911 142122 2212 Locate
trnL-CAA gene + 142665 142745 81 Locate
ycf15 gene − 143001 143249 249 Locate
ycf2 gene − 143340 150149 6810 Locate
trnI-CAU gene + 150238 150311 74 Locate
rpl23 gene + 150471 150752 282 Locate
rpl2 gene + 150771 152253 1483 Locate
Status Available
Accession PQ058261.1
Length 152,348 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources