Scutellaria yezoensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059346.1 · 3–76 bp · −
psbA · PQ059346.1 · 380–1,438 bp · −
trnK-UUU · PQ059346.1 · 1,671–4,258 bp · −
matK · PQ059346.1 · 1,966–3,501 bp · −
rps16 · PQ059346.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ059346.1 · 7,462–7,533 bp · −
trnS-GCU · PQ059346.1 · 8,663–8,750 bp · −
atpA · PQ059346.1 · 10,555–12,078 bp · −
atpF · PQ059346.1 · 12,152–13,379 bp · −
atpH · PQ059346.1 · 13,746–13,991 bp · −
atpI · PQ059346.1 · 14,988–15,731 bp · −
rps2 · PQ059346.1 · 16,080–16,790 bp · −
rpoC2 · PQ059346.1 · 17,006–21,211 bp · −
rpoC1 · PQ059346.1 · 21,366–24,202 bp · −
rpoB · PQ059346.1 · 24,229–27,441 bp · −
psbM · PQ059346.1 · 30,503–30,607 bp · −
trnD-GUC · PQ059346.1 · 31,133–31,206 bp · −
trnY-GUA · PQ059346.1 · 31,320–31,403 bp · −
trnE-UUC · PQ059346.1 · 31,463–31,535 bp · −
trnS-UGA · PQ059346.1 · 36,160–36,251 bp · −
trnfM-CAU · PQ059346.1 · 37,246–37,319 bp · −
rps14 · PQ059346.1 · 37,469–37,771 bp · −
psaB · PQ059346.1 · 37,899–40,103 bp · −
psaA · PQ059346.1 · 40,129–42,381 bp · −
ycf3 · PQ059346.1 · 43,056–44,978 bp · −
rps4 · PQ059346.1 · 46,244–46,849 bp · −
trnT-UGU · PQ059346.1 · 47,188–47,260 bp · −
ndhJ · PQ059346.1 · 49,542–50,018 bp · −
ndhK · PQ059346.1 · 50,126–50,803 bp · −
ndhC · PQ059346.1 · 50,856–51,218 bp · −
trnV-UAC · PQ059346.1 · 52,215–52,867 bp · −
atpE · PQ059346.1 · 53,330–53,731 bp · −
atpB · PQ059346.1 · 53,728–55,215 bp · −
psbJ · PQ059346.1 · 64,971–65,093 bp · −
psbL · PQ059346.1 · 65,227–65,343 bp · −
psbF · PQ059346.1 · 65,367–65,486 bp · −
psbE · PQ059346.1 · 65,501–65,752 bp · −
trnW-CCA · PQ059346.1 · 67,162–67,235 bp · −
trnP-UGG · PQ059346.1 · 67,405–67,478 bp · −
rpl20 · PQ059346.1 · 69,274–69,660 bp · −
rps12 · PQ059346.1 · 70,457–70,570 bp · −
rps12 · PQ059346.1 · 97,791–98,581 bp · −
clpP · PQ059346.1 · 70,713–72,647 bp · −
psbN · PQ059346.1 · 75,015–75,146 bp · −
rpoA · PQ059346.1 · 78,514–79,527 bp · −
rps11 · PQ059346.1 · 79,599–80,015 bp · −
rpl36 · PQ059346.1 · 80,117–80,230 bp · −
infA · PQ059346.1 · 80,326–80,559 bp · −
rps8 · PQ059346.1 · 80,679–81,089 bp · −
rpl14 · PQ059346.1 · 81,248–81,616 bp · −
rpl16 · PQ059346.1 · 81,743–82,986 bp · −
rps3 · PQ059346.1 · 83,141–83,803 bp · −
rpl22 · PQ059346.1 · 83,805–84,260 bp · −
rps19 · PQ059346.1 · 84,320–84,598 bp · −
rpl2 · PQ059346.1 · 84,653–86,135 bp · −
rpl23 · PQ059346.1 · 86,154–86,435 bp · −
trnI-CAU · PQ059346.1 · 86,595–86,668 bp · −
trnL-CAA · PQ059346.1 · 94,161–94,241 bp · −
ndhB · PQ059346.1 · 94,784–96,941 bp · −
rps7 · PQ059346.1 · 97,270–97,737 bp · −
trnN-GUU · PQ059346.1 · 108,623–108,694 bp · −
ndhF · PQ059346.1 · 109,764–112,004 bp · −
ndhD · PQ059346.1 · 114,527–116,029 bp · −
psaC · PQ059346.1 · 116,149–116,394 bp · −
ndhE · PQ059346.1 · 116,656–116,961 bp · −
ndhG · PQ059346.1 · 117,182–117,712 bp · −
ndhI · PQ059346.1 · 118,076–118,576 bp · −
ndhA · PQ059346.1 · 118,657–120,756 bp · −
ndhH · PQ059346.1 · 120,758–121,939 bp · −
rps15 · PQ059346.1 · 122,042–122,314 bp · −
ycf1 · PQ059346.1 · 122,585–128,338 bp · −
trnR-ACG · PQ059346.1 · 129,069–129,142 bp · −
rrn5 · PQ059346.1 · 129,377–129,497 bp · −
rrn4.5 · PQ059346.1 · 129,745–129,847 bp · −
rrn23 · PQ059346.1 · 129,946–132,758 bp · −
trnI-GAU · PQ059346.1 · 133,878–134,899 bp · −
ycf68 · PQ059346.1 · 134,505–134,744 bp · −
rrn16 · PQ059346.1 · 135,198–136,688 bp · −
trnV-GAC · PQ059346.1 · 136,916–136,987 bp · −
ycf15 · PQ059346.1 · 143,241–143,438 bp · −
ycf2 · PQ059346.1 · 143,580–150,389 bp · −
psbK · PQ059346.1 · 7,858–8,043 bp · +
psbI · PQ059346.1 · 8,434–8,544 bp · +
trnG-UCC · PQ059346.1 · 9,438–10,197 bp · +
trnR-UCU · PQ059346.1 · 10,387–10,458 bp · +
trnC-GCA · PQ059346.1 · 28,605–28,675 bp · +
petN · PQ059346.1 · 29,386–29,475 bp · +
trnT-GGU · PQ059346.1 · 32,118–32,189 bp · +
psbD · PQ059346.1 · 33,486–34,547 bp · +
psbC · PQ059346.1 · 34,495–35,916 bp · +
psbZ · PQ059346.1 · 36,571–36,759 bp · +
trnG-GCC · PQ059346.1 · 37,031–37,101 bp · +
trnS-GGA · PQ059346.1 · 45,872–45,958 bp · +
trnL-UAA · PQ059346.1 · 47,946–48,514 bp · +
trnF-GAA · PQ059346.1 · 48,821–48,893 bp · +
trnM-CAU · PQ059346.1 · 53,048–53,120 bp · +
rbcL · PQ059346.1 · 55,967–57,430 bp · +
accD · PQ059346.1 · 58,141–59,607 bp · +
psaI · PQ059346.1 · 60,338–60,448 bp · +
ycf4 · PQ059346.1 · 60,882–61,436 bp · +
cemA · PQ059346.1 · 62,185–62,784 bp · +
petA · PQ059346.1 · 62,991–63,953 bp · +
petL · PQ059346.1 · 66,660–66,755 bp · +
petG · PQ059346.1 · 66,930–67,043 bp · +
psaJ · PQ059346.1 · 67,750–67,884 bp · +
rpl33 · PQ059346.1 · 68,356–68,556 bp · +
rps18 · PQ059346.1 · 68,731–69,036 bp · +
rps12 · PQ059346.1 · 138,565–139,355 bp · +
psbB · PQ059346.1 · 73,122–74,648 bp · +
psbT · PQ059346.1 · 74,840–74,941 bp · +
psbH · PQ059346.1 · 75,250–75,471 bp · +
petB · PQ059346.1 · 75,596–76,961 bp · +
petD · PQ059346.1 · 77,150–78,351 bp · +
ycf2 · PQ059346.1 · 86,757–93,566 bp · +
ycf15 · PQ059346.1 · 93,708–93,905 bp · +
trnV-GAC · PQ059346.1 · 100,159–100,230 bp · +
rrn16 · PQ059346.1 · 100,458–101,948 bp · +
trnI-GAU · PQ059346.1 · 102,247–103,268 bp · +
trnA-UGC · PQ059346.1 · 103,333–104,217 bp · +
rrn23 · PQ059346.1 · 104,387–107,199 bp · +
rrn4.5 · PQ059346.1 · 107,298–107,400 bp · +
rrn5 · PQ059346.1 · 107,648–107,768 bp · +
trnR-ACG · PQ059346.1 · 108,003–108,076 bp · +
rpl32 · PQ059346.1 · 112,521–112,697 bp · +
trnL-UAG · PQ059346.1 · 113,144–113,223 bp · +
ccsA · PQ059346.1 · 113,320–114,294 bp · +
trnN-GUU · PQ059346.1 · 128,451–128,522 bp · +
rps7 · PQ059346.1 · 139,409–139,876 bp · +
ndhB · PQ059346.1 · 140,205–142,362 bp · +
trnL-CAA · PQ059346.1 · 142,905–142,985 bp · +
trnI-CAU · PQ059346.1 · 150,478–150,551 bp · +
rpl23 · PQ059346.1 · 150,711–150,992 bp · +
rpl2 · PQ059346.1 · 151,011–152,493 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria yezoensis
ANNOTATED PLASTOME
PQ059346.1
152,588 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38147 76294 114441 152588 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1671 4258 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7462 7533 72 Locate
psbK gene + 7858 8043 186 Locate
psbI gene + 8434 8544 111 Locate
trnS-GCU gene − 8663 8750 88 Locate
trnG-UCC gene + 9438 10197 760 Locate
trnR-UCU gene + 10387 10458 72 Locate
atpA gene − 10555 12078 1524 Locate
atpF gene − 12152 13379 1228 Locate
atpH gene − 13746 13991 246 Locate
atpI gene − 14988 15731 744 Locate
rps2 gene − 16080 16790 711 Locate
rpoC2 gene − 17006 21211 4206 Locate
rpoC1 gene − 21366 24202 2837 Locate
rpoB gene − 24229 27441 3213 Locate
trnC-GCA gene + 28605 28675 71 Locate
petN gene + 29386 29475 90 Locate
psbM gene − 30503 30607 105 Locate
trnD-GUC gene − 31133 31206 74 Locate
trnY-GUA gene − 31320 31403 84 Locate
trnE-UUC gene − 31463 31535 73 Locate
trnT-GGU gene + 32118 32189 72 Locate
psbD gene + 33486 34547 1062 Locate
psbC gene + 34495 35916 1422 Locate
trnS-UGA gene − 36160 36251 92 Locate
psbZ gene + 36571 36759 189 Locate
trnG-GCC gene + 37031 37101 71 Locate
trnfM-CAU gene − 37246 37319 74 Locate
rps14 gene − 37469 37771 303 Locate
psaB gene − 37899 40103 2205 Locate
psaA gene − 40129 42381 2253 Locate
ycf3 gene − 43056 44978 1923 Locate
trnS-GGA gene + 45872 45958 87 Locate
rps4 gene − 46244 46849 606 Locate
trnT-UGU gene − 47188 47260 73 Locate
trnL-UAA gene + 47946 48514 569 Locate
trnF-GAA gene + 48821 48893 73 Locate
ndhJ gene − 49542 50018 477 Locate
ndhK gene − 50126 50803 678 Locate
ndhC gene − 50856 51218 363 Locate
trnV-UAC gene − 52215 52867 653 Locate
trnM-CAU gene + 53048 53120 73 Locate
atpE gene − 53330 53731 402 Locate
atpB gene − 53728 55215 1488 Locate
rbcL gene + 55967 57430 1464 Locate
accD gene + 58141 59607 1467 Locate
psaI gene + 60338 60448 111 Locate
ycf4 gene + 60882 61436 555 Locate
cemA gene + 62185 62784 600 Locate
petA gene + 62991 63953 963 Locate
psbJ gene − 64971 65093 123 Locate
psbL gene − 65227 65343 117 Locate
psbF gene − 65367 65486 120 Locate
psbE gene − 65501 65752 252 Locate
petL gene + 66660 66755 96 Locate
petG gene + 66930 67043 114 Locate
trnW-CCA gene − 67162 67235 74 Locate
trnP-UGG gene − 67405 67478 74 Locate
psaJ gene + 67750 67884 135 Locate
rpl33 gene + 68356 68556 201 Locate
rps18 gene + 68731 69036 306 Locate
rpl20 gene − 69274 69660 387 Locate
rps12 gene − 70457 70570 114 Locate
clpP gene − 70713 72647 1935 Locate
psbB gene + 73122 74648 1527 Locate
psbT gene + 74840 74941 102 Locate
psbN gene − 75015 75146 132 Locate
psbH gene + 75250 75471 222 Locate
petB gene + 75596 76961 1366 Locate
petD gene + 77150 78351 1202 Locate
rpoA gene − 78514 79527 1014 Locate
rps11 gene − 79599 80015 417 Locate
rpl36 gene − 80117 80230 114 Locate
infA gene − 80326 80559 234 Locate
rps8 gene − 80679 81089 411 Locate
rpl14 gene − 81248 81616 369 Locate
rpl16 gene − 81743 82986 1244 Locate
rps3 gene − 83141 83803 663 Locate
rpl22 gene − 83805 84260 456 Locate
rps19 gene − 84320 84598 279 Locate
rpl2 gene − 84653 86135 1483 Locate
rpl23 gene − 86154 86435 282 Locate
trnI-CAU gene − 86595 86668 74 Locate
ycf2 gene + 86757 93566 6810 Locate
ycf15 gene + 93708 93905 198 Locate
trnL-CAA gene − 94161 94241 81 Locate
ndhB gene − 94784 96941 2158 Locate
rps7 gene − 97270 97737 468 Locate
rps12 gene − 97791 98581 791 Locate
trnV-GAC gene + 100159 100230 72 Locate
rrn16 gene + 100458 101948 1491 Locate
trnI-GAU gene + 102247 103268 1022 Locate
trnA-UGC gene + 103333 104217 885 Locate
rrn23 gene + 104387 107199 2813 Locate
rrn4.5 gene + 107298 107400 103 Locate
rrn5 gene + 107648 107768 121 Locate
trnR-ACG gene + 108003 108076 74 Locate
trnN-GUU gene − 108623 108694 72 Locate
ndhF gene − 109764 112004 2241 Locate
rpl32 gene + 112521 112697 177 Locate
trnL-UAG gene + 113144 113223 80 Locate
ccsA gene + 113320 114294 975 Locate
ndhD gene − 114527 116029 1503 Locate
psaC gene − 116149 116394 246 Locate
ndhE gene − 116656 116961 306 Locate
ndhG gene − 117182 117712 531 Locate
ndhI gene − 118076 118576 501 Locate
ndhA gene − 118657 120756 2100 Locate
ndhH gene − 120758 121939 1182 Locate
rps15 gene − 122042 122314 273 Locate
ycf1 gene − 122585 128338 5754 Locate
trnN-GUU gene + 128451 128522 72 Locate
trnR-ACG gene − 129069 129142 74 Locate
rrn5 gene − 129377 129497 121 Locate
rrn4.5 gene − 129745 129847 103 Locate
rrn23 gene − 129946 132758 2813 Locate
trnI-GAU gene − 133878 134899 1022 Locate
ycf68 gene − 134505 134744 240 Locate
rrn16 gene − 135198 136688 1491 Locate
trnV-GAC gene − 136916 136987 72 Locate
rps12 gene + 138565 139355 791 Locate
rps7 gene + 139409 139876 468 Locate
ndhB gene + 140205 142362 2158 Locate
trnL-CAA gene + 142905 142985 81 Locate
ycf15 gene − 143241 143438 198 Locate
ycf2 gene − 143580 150389 6810 Locate
trnI-CAU gene + 150478 150551 74 Locate
rpl23 gene + 150711 150992 282 Locate
rpl2 gene + 151011 152493 1483 Locate
Status Available
Accession PQ059346.1
Length 152,588 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources