Scutellaria yingtakensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059356.1 · 3–76 bp · −
psbA · PQ059356.1 · 365–1,423 bp · −
trnK-UUU · PQ059356.1 · 1,665–4,253 bp · −
matK · PQ059356.1 · 1,960–3,495 bp · −
rps16 · PQ059356.1 · 5,135–6,308 bp · −
trnQ-UUG · PQ059356.1 · 7,309–7,380 bp · −
trnS-GCU · PQ059356.1 · 8,511–8,598 bp · −
atpA · PQ059356.1 · 10,374–11,897 bp · −
atpF · PQ059356.1 · 11,980–13,207 bp · −
atpH · PQ059356.1 · 13,564–13,809 bp · −
atpI · PQ059356.1 · 14,797–15,540 bp · −
rps2 · PQ059356.1 · 15,889–16,599 bp · −
rpoC2 · PQ059356.1 · 16,816–21,021 bp · −
rpoC1 · PQ059356.1 · 21,176–24,008 bp · −
rpoB · PQ059356.1 · 24,035–27,247 bp · −
psbM · PQ059356.1 · 30,281–30,385 bp · −
trnD-GUC · PQ059356.1 · 30,912–30,985 bp · −
trnY-GUA · PQ059356.1 · 31,099–31,182 bp · −
trnE-UUC · PQ059356.1 · 31,242–31,314 bp · −
trnS-UGA · PQ059356.1 · 35,935–36,026 bp · −
trnfM-CAU · PQ059356.1 · 37,029–37,102 bp · −
rps14 · PQ059356.1 · 37,252–37,554 bp · −
psaB · PQ059356.1 · 37,682–39,886 bp · −
psaA · PQ059356.1 · 39,912–42,164 bp · −
ycf3 · PQ059356.1 · 42,834–44,756 bp · −
rps4 · PQ059356.1 · 46,013–46,618 bp · −
trnT-UGU · PQ059356.1 · 46,978–47,050 bp · −
ndhJ · PQ059356.1 · 49,325–49,801 bp · −
ndhK · PQ059356.1 · 49,909–50,586 bp · −
ndhC · PQ059356.1 · 50,639–51,001 bp · −
trnV-UAC · PQ059356.1 · 51,857–52,509 bp · −
atpE · PQ059356.1 · 52,978–53,379 bp · −
atpB · PQ059356.1 · 53,376–54,863 bp · −
psbJ · PQ059356.1 · 64,399–64,521 bp · −
psbL · PQ059356.1 · 64,655–64,876 bp · −
psbF · PQ059356.1 · 64,795–64,914 bp · −
psbE · PQ059356.1 · 64,929–65,180 bp · −
trnW-CCA · PQ059356.1 · 66,592–66,665 bp · −
trnP-UGG · PQ059356.1 · 66,835–66,908 bp · −
rpl20 · PQ059356.1 · 68,706–69,092 bp · −
rps12 · PQ059356.1 · 69,891–70,004 bp · −
rps12 · PQ059356.1 · 97,211–98,001 bp · −
clpP · PQ059356.1 · 70,147–72,080 bp · −
psbN · PQ059356.1 · 74,440–74,571 bp · −
rpoA · PQ059356.1 · 78,154–78,954 bp · −
rps11 · PQ059356.1 · 79,026–79,442 bp · −
rpl36 · PQ059356.1 · 79,544–79,657 bp · −
infA · PQ059356.1 · 79,753–79,986 bp · −
rps8 · PQ059356.1 · 80,106–80,516 bp · −
rpl14 · PQ059356.1 · 80,686–81,054 bp · −
rpl16 · PQ059356.1 · 81,181–82,414 bp · −
rps3 · PQ059356.1 · 82,569–83,231 bp · −
rpl22 · PQ059356.1 · 83,233–83,688 bp · −
rps19 · PQ059356.1 · 83,748–84,026 bp · −
rpl2 · PQ059356.1 · 84,081–85,563 bp · −
rpl23 · PQ059356.1 · 85,582–85,863 bp · −
trnI-CAU · PQ059356.1 · 86,023–86,096 bp · −
trnL-CAA · PQ059356.1 · 93,589–93,669 bp · −
ndhB · PQ059356.1 · 94,212–96,415 bp · −
rps7 · PQ059356.1 · 96,690–97,157 bp · −
trnN-GUU · PQ059356.1 · 108,041–108,112 bp · −
ndhF · PQ059356.1 · 109,189–111,429 bp · −
ndhD · PQ059356.1 · 113,953–115,476 bp · −
psaC · PQ059356.1 · 115,575–115,820 bp · −
ndhE · PQ059356.1 · 116,077–116,382 bp · −
ndhG · PQ059356.1 · 116,603–117,133 bp · −
ndhI · PQ059356.1 · 117,498–117,998 bp · −
ndhA · PQ059356.1 · 118,079–120,170 bp · −
ndhH · PQ059356.1 · 120,172–121,353 bp · −
rps15 · PQ059356.1 · 121,456–121,728 bp · −
ycf1 · PQ059356.1 · 121,995–127,640 bp · −
trnR-ACG · PQ059356.1 · 128,477–128,550 bp · −
rrn5 · PQ059356.1 · 128,785–128,905 bp · −
rrn4.5 · PQ059356.1 · 129,153–129,255 bp · −
rrn23 · PQ059356.1 · 129,354–132,166 bp · −
trnA-UGC · PQ059356.1 · 132,336–133,219 bp · −
trnI-GAU · PQ059356.1 · 133,284–134,304 bp · −
ycf68 · PQ059356.1 · 133,910–134,149 bp · −
rrn16 · PQ059356.1 · 134,603–136,093 bp · −
trnV-GAC · PQ059356.1 · 136,321–136,392 bp · −
ycf15 · PQ059356.1 · 142,638–142,886 bp · −
ycf2 · PQ059356.1 · 142,977–149,786 bp · −
psbK · PQ059356.1 · 7,705–7,890 bp · +
psbI · PQ059356.1 · 8,282–8,392 bp · +
trnG-UCC · PQ059356.1 · 9,280–10,036 bp · +
trnR-UCU · PQ059356.1 · 10,206–10,277 bp · +
trnC-GCA · PQ059356.1 · 28,417–28,487 bp · +
petN · PQ059356.1 · 29,199–29,288 bp · +
trnT-GGU · PQ059356.1 · 31,890–31,961 bp · +
psbD · PQ059356.1 · 33,267–34,328 bp · +
psbC · PQ059356.1 · 34,276–35,697 bp · +
psbZ · PQ059356.1 · 36,346–36,534 bp · +
trnG-GCC · PQ059356.1 · 36,806–36,876 bp · +
trnS-GGA · PQ059356.1 · 45,641–45,727 bp · +
trnL-UAA · PQ059356.1 · 47,737–48,298 bp · +
trnF-GAA · PQ059356.1 · 48,605–48,677 bp · +
trnM-CAU · PQ059356.1 · 52,690–52,762 bp · +
rbcL · PQ059356.1 · 55,613–57,076 bp · +
accD · PQ059356.1 · 57,809–59,275 bp · +
psaI · PQ059356.1 · 59,808–59,918 bp · +
ycf4 · PQ059356.1 · 60,352–60,906 bp · +
cemA · PQ059356.1 · 61,644–62,243 bp · +
petA · PQ059356.1 · 62,450–63,412 bp · +
petL · PQ059356.1 · 66,089–66,184 bp · +
petG · PQ059356.1 · 66,360–66,473 bp · +
psaJ · PQ059356.1 · 67,181–67,315 bp · +
rpl33 · PQ059356.1 · 67,789–67,989 bp · +
rps18 · PQ059356.1 · 68,164–68,469 bp · +
rps12 · PQ059356.1 · 137,970–138,760 bp · +
psbB · PQ059356.1 · 72,547–74,073 bp · +
psbT · PQ059356.1 · 74,265–74,366 bp · +
psbH · PQ059356.1 · 74,675–74,896 bp · +
petB · PQ059356.1 · 75,021–76,389 bp · +
petD · PQ059356.1 · 76,578–77,779 bp · +
ycf2 · PQ059356.1 · 86,185–92,994 bp · +
ycf15 · PQ059356.1 · 93,085–93,333 bp · +
trnV-GAC · PQ059356.1 · 99,579–99,650 bp · +
rrn16 · PQ059356.1 · 99,878–101,368 bp · +
trnI-GAU · PQ059356.1 · 101,667–102,687 bp · +
trnA-UGC · PQ059356.1 · 102,752–103,635 bp · +
rrn23 · PQ059356.1 · 103,805–106,617 bp · +
rrn4.5 · PQ059356.1 · 106,716–106,818 bp · +
rrn5 · PQ059356.1 · 107,066–107,186 bp · +
trnR-ACG · PQ059356.1 · 107,421–107,494 bp · +
rpl32 · PQ059356.1 · 111,950–112,126 bp · +
trnL-UAG · PQ059356.1 · 112,571–112,650 bp · +
ccsA · PQ059356.1 · 112,746–113,720 bp · +
trnN-GUU · PQ059356.1 · 127,859–127,930 bp · +
rps7 · PQ059356.1 · 138,814–139,281 bp · +
ndhB · PQ059356.1 · 139,556–141,759 bp · +
trnL-CAA · PQ059356.1 · 142,302–142,382 bp · +
trnI-CAU · PQ059356.1 · 149,875–149,948 bp · +
rpl23 · PQ059356.1 · 150,108–150,389 bp · +
rpl2 · PQ059356.1 · 150,408–151,890 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria yingtakensis
ANNOTATED PLASTOME
PQ059356.1
151,985 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37996 75992 113989 151985 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5135 6308 1174 Locate
trnQ-UUG gene − 7309 7380 72 Locate
psbK gene + 7705 7890 186 Locate
psbI gene + 8282 8392 111 Locate
trnS-GCU gene − 8511 8598 88 Locate
trnG-UCC gene + 9280 10036 757 Locate
trnR-UCU gene + 10206 10277 72 Locate
atpA gene − 10374 11897 1524 Locate
atpF gene − 11980 13207 1228 Locate
atpH gene − 13564 13809 246 Locate
atpI gene − 14797 15540 744 Locate
rps2 gene − 15889 16599 711 Locate
rpoC2 gene − 16816 21021 4206 Locate
rpoC1 gene − 21176 24008 2833 Locate
rpoB gene − 24035 27247 3213 Locate
trnC-GCA gene + 28417 28487 71 Locate
petN gene + 29199 29288 90 Locate
psbM gene − 30281 30385 105 Locate
trnD-GUC gene − 30912 30985 74 Locate
trnY-GUA gene − 31099 31182 84 Locate
trnE-UUC gene − 31242 31314 73 Locate
trnT-GGU gene + 31890 31961 72 Locate
psbD gene + 33267 34328 1062 Locate
psbC gene + 34276 35697 1422 Locate
trnS-UGA gene − 35935 36026 92 Locate
psbZ gene + 36346 36534 189 Locate
trnG-GCC gene + 36806 36876 71 Locate
trnfM-CAU gene − 37029 37102 74 Locate
rps14 gene − 37252 37554 303 Locate
psaB gene − 37682 39886 2205 Locate
psaA gene − 39912 42164 2253 Locate
ycf3 gene − 42834 44756 1923 Locate
trnS-GGA gene + 45641 45727 87 Locate
rps4 gene − 46013 46618 606 Locate
trnT-UGU gene − 46978 47050 73 Locate
trnL-UAA gene + 47737 48298 562 Locate
trnF-GAA gene + 48605 48677 73 Locate
ndhJ gene − 49325 49801 477 Locate
ndhK gene − 49909 50586 678 Locate
ndhC gene − 50639 51001 363 Locate
trnV-UAC gene − 51857 52509 653 Locate
trnM-CAU gene + 52690 52762 73 Locate
atpE gene − 52978 53379 402 Locate
atpB gene − 53376 54863 1488 Locate
rbcL gene + 55613 57076 1464 Locate
accD gene + 57809 59275 1467 Locate
psaI gene + 59808 59918 111 Locate
ycf4 gene + 60352 60906 555 Locate
cemA gene + 61644 62243 600 Locate
petA gene + 62450 63412 963 Locate
psbJ gene − 64399 64521 123 Locate
psbL gene − 64655 64876 222 Locate
psbF gene − 64795 64914 120 Locate
psbE gene − 64929 65180 252 Locate
petL gene + 66089 66184 96 Locate
petG gene + 66360 66473 114 Locate
trnW-CCA gene − 66592 66665 74 Locate
trnP-UGG gene − 66835 66908 74 Locate
psaJ gene + 67181 67315 135 Locate
rpl33 gene + 67789 67989 201 Locate
rps18 gene + 68164 68469 306 Locate
rpl20 gene − 68706 69092 387 Locate
rps12 gene − 69891 70004 114 Locate
clpP gene − 70147 72080 1934 Locate
psbB gene + 72547 74073 1527 Locate
psbT gene + 74265 74366 102 Locate
psbN gene − 74440 74571 132 Locate
psbH gene + 74675 74896 222 Locate
petB gene + 75021 76389 1369 Locate
petD gene + 76578 77779 1202 Locate
rpoA gene − 78154 78954 801 Locate
rps11 gene − 79026 79442 417 Locate
rpl36 gene − 79544 79657 114 Locate
infA gene − 79753 79986 234 Locate
rps8 gene − 80106 80516 411 Locate
rpl14 gene − 80686 81054 369 Locate
rpl16 gene − 81181 82414 1234 Locate
rps3 gene − 82569 83231 663 Locate
rpl22 gene − 83233 83688 456 Locate
rps19 gene − 83748 84026 279 Locate
rpl2 gene − 84081 85563 1483 Locate
rpl23 gene − 85582 85863 282 Locate
trnI-CAU gene − 86023 86096 74 Locate
ycf2 gene + 86185 92994 6810 Locate
ycf15 gene + 93085 93333 249 Locate
trnL-CAA gene − 93589 93669 81 Locate
ndhB gene − 94212 96415 2204 Locate
rps7 gene − 96690 97157 468 Locate
rps12 gene − 97211 98001 791 Locate
trnV-GAC gene + 99579 99650 72 Locate
rrn16 gene + 99878 101368 1491 Locate
trnI-GAU gene + 101667 102687 1021 Locate
trnA-UGC gene + 102752 103635 884 Locate
rrn23 gene + 103805 106617 2813 Locate
rrn4.5 gene + 106716 106818 103 Locate
rrn5 gene + 107066 107186 121 Locate
trnR-ACG gene + 107421 107494 74 Locate
trnN-GUU gene − 108041 108112 72 Locate
ndhF gene − 109189 111429 2241 Locate
rpl32 gene + 111950 112126 177 Locate
trnL-UAG gene + 112571 112650 80 Locate
ccsA gene + 112746 113720 975 Locate
ndhD gene − 113953 115476 1524 Locate
psaC gene − 115575 115820 246 Locate
ndhE gene − 116077 116382 306 Locate
ndhG gene − 116603 117133 531 Locate
ndhI gene − 117498 117998 501 Locate
ndhA gene − 118079 120170 2092 Locate
ndhH gene − 120172 121353 1182 Locate
rps15 gene − 121456 121728 273 Locate
ycf1 gene − 121995 127640 5646 Locate
trnN-GUU gene + 127859 127930 72 Locate
trnR-ACG gene − 128477 128550 74 Locate
rrn5 gene − 128785 128905 121 Locate
rrn4.5 gene − 129153 129255 103 Locate
rrn23 gene − 129354 132166 2813 Locate
trnA-UGC gene − 132336 133219 884 Locate
trnI-GAU gene − 133284 134304 1021 Locate
ycf68 gene − 133910 134149 240 Locate
rrn16 gene − 134603 136093 1491 Locate
trnV-GAC gene − 136321 136392 72 Locate
rps12 gene + 137970 138760 791 Locate
rps7 gene + 138814 139281 468 Locate
ndhB gene + 139556 141759 2204 Locate
trnL-CAA gene + 142302 142382 81 Locate
ycf15 gene − 142638 142886 249 Locate
ycf2 gene − 142977 149786 6810 Locate
trnI-CAU gene + 149875 149948 74 Locate
rpl23 gene + 150108 150389 282 Locate
rpl2 gene + 150408 151890 1483 Locate
Status Available
Accession PQ059356.1
Length 151,985 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources