Scutellaria yunnanensis var. salicifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059357.1 · 3–76 bp · −
psbA · PQ059357.1 · 217–1,275 bp · −
trnK-UUU · PQ059357.1 · 1,517–4,105 bp · −
matK · PQ059357.1 · 1,812–3,347 bp · −
rps16 · PQ059357.1 · 4,987–6,159 bp · −
trnQ-UUG · PQ059357.1 · 7,164–7,235 bp · −
trnS-GCU · PQ059357.1 · 8,367–8,454 bp · −
atpA · PQ059357.1 · 10,225–11,748 bp · −
atpF · PQ059357.1 · 11,831–13,058 bp · −
atpH · PQ059357.1 · 13,414–13,659 bp · −
atpI · PQ059357.1 · 14,655–15,398 bp · −
rps2 · PQ059357.1 · 15,747–16,457 bp · −
rpoC2 · PQ059357.1 · 16,674–20,879 bp · −
rpoC1 · PQ059357.1 · 21,034–23,863 bp · −
rpoB · PQ059357.1 · 23,890–27,102 bp · −
psbM · PQ059357.1 · 30,140–30,244 bp · −
trnD-GUC · PQ059357.1 · 30,764–30,837 bp · −
trnY-GUA · PQ059357.1 · 30,952–31,035 bp · −
trnE-UUC · PQ059357.1 · 31,095–31,167 bp · −
trnS-UGA · PQ059357.1 · 35,786–35,877 bp · −
trnfM-CAU · PQ059357.1 · 36,881–36,954 bp · −
rps14 · PQ059357.1 · 37,104–37,406 bp · −
psaB · PQ059357.1 · 37,534–39,738 bp · −
psaA · PQ059357.1 · 39,764–42,016 bp · −
ycf3 · PQ059357.1 · 42,686–44,609 bp · −
rps4 · PQ059357.1 · 45,866–46,471 bp · −
trnT-UGU · PQ059357.1 · 46,825–46,897 bp · −
ndhJ · PQ059357.1 · 49,164–49,640 bp · −
ndhK · PQ059357.1 · 49,748–50,425 bp · −
ndhC · PQ059357.1 · 50,478–50,840 bp · −
trnV-UAC · PQ059357.1 · 51,696–52,348 bp · −
atpE · PQ059357.1 · 52,817–53,218 bp · −
atpB · PQ059357.1 · 53,215–54,702 bp · −
psbJ · PQ059357.1 · 64,303–64,425 bp · −
psbL · PQ059357.1 · 64,559–64,675 bp · −
psbF · PQ059357.1 · 64,699–64,818 bp · −
psbE · PQ059357.1 · 64,833–65,084 bp · −
trnW-CCA · PQ059357.1 · 66,496–66,569 bp · −
trnP-UGG · PQ059357.1 · 66,739–66,812 bp · −
rpl20 · PQ059357.1 · 68,610–68,996 bp · −
rps12 · PQ059357.1 · 69,797–69,910 bp · −
rps12 · PQ059357.1 · 97,119–97,909 bp · −
clpP · PQ059357.1 · 70,053–71,985 bp · −
psbN · PQ059357.1 · 74,345–74,476 bp · −
rpoA · PQ059357.1 · 78,058–78,858 bp · −
rps11 · PQ059357.1 · 78,930–79,346 bp · −
rpl36 · PQ059357.1 · 79,448–79,561 bp · −
infA · PQ059357.1 · 79,657–79,890 bp · −
rps8 · PQ059357.1 · 80,006–80,416 bp · −
rpl14 · PQ059357.1 · 80,586–80,954 bp · −
rpl16 · PQ059357.1 · 81,081–82,314 bp · −
rps3 · PQ059357.1 · 82,469–83,131 bp · −
rpl22 · PQ059357.1 · 83,133–83,588 bp · −
rps19 · PQ059357.1 · 83,648–83,926 bp · −
rpl2 · PQ059357.1 · 83,981–85,463 bp · −
rpl23 · PQ059357.1 · 85,482–85,763 bp · −
trnI-CAU · PQ059357.1 · 85,923–85,996 bp · −
trnL-CAA · PQ059357.1 · 93,489–93,569 bp · −
ndhB · PQ059357.1 · 94,112–96,269 bp · −
rps7 · PQ059357.1 · 96,598–97,065 bp · −
trnN-GUU · PQ059357.1 · 107,948–108,019 bp · −
ndhF · PQ059357.1 · 109,096–111,336 bp · −
ndhD · PQ059357.1 · 113,861–115,384 bp · −
psaC · PQ059357.1 · 115,490–115,735 bp · −
ndhE · PQ059357.1 · 115,992–116,297 bp · −
ndhG · PQ059357.1 · 116,528–117,058 bp · −
ndhI · PQ059357.1 · 117,423–117,923 bp · −
ndhA · PQ059357.1 · 118,004–120,088 bp · −
ndhH · PQ059357.1 · 120,090–121,301 bp · −
rps15 · PQ059357.1 · 121,374–121,706 bp · −
ycf1 · PQ059357.1 · 121,913–127,558 bp · −
trnR-ACG · PQ059357.1 · 128,395–128,468 bp · −
rrn5 · PQ059357.1 · 128,703–128,823 bp · −
rrn4.5 · PQ059357.1 · 129,071–129,173 bp · −
rrn23 · PQ059357.1 · 129,272–132,084 bp · −
trnA-UGC · PQ059357.1 · 132,254–133,136 bp · −
trnI-GAU · PQ059357.1 · 133,201–134,221 bp · −
ycf68 · PQ059357.1 · 133,827–134,066 bp · −
rrn16 · PQ059357.1 · 134,520–136,010 bp · −
trnV-GAC · PQ059357.1 · 136,238–136,309 bp · −
ycf15 · PQ059357.1 · 142,563–142,811 bp · −
ycf2 · PQ059357.1 · 142,902–149,711 bp · −
psbK · PQ059357.1 · 7,560–7,745 bp · +
psbI · PQ059357.1 · 8,137–8,247 bp · +
trnG-UCC · PQ059357.1 · 9,135–9,886 bp · +
trnR-UCU · PQ059357.1 · 10,057–10,128 bp · +
trnC-GCA · PQ059357.1 · 28,271–28,341 bp · +
petN · PQ059357.1 · 29,053–29,142 bp · +
trnT-GGU · PQ059357.1 · 31,743–31,814 bp · +
psbD · PQ059357.1 · 33,121–34,182 bp · +
psbC · PQ059357.1 · 34,130–35,551 bp · +
psbZ · PQ059357.1 · 36,197–36,385 bp · +
trnG-GCC · PQ059357.1 · 36,657–36,727 bp · +
trnS-GGA · PQ059357.1 · 45,494–45,580 bp · +
trnL-UAA · PQ059357.1 · 47,583–48,143 bp · +
trnF-GAA · PQ059357.1 · 48,450–48,522 bp · +
trnM-CAU · PQ059357.1 · 52,529–52,601 bp · +
rbcL · PQ059357.1 · 55,452–56,915 bp · +
accD · PQ059357.1 · 57,641–59,107 bp · +
psaI · PQ059357.1 · 59,665–59,775 bp · +
ycf4 · PQ059357.1 · 60,209–60,763 bp · +
cemA · PQ059357.1 · 61,501–62,100 bp · +
petA · PQ059357.1 · 62,307–63,269 bp · +
petL · PQ059357.1 · 65,993–66,088 bp · +
petG · PQ059357.1 · 66,264–66,377 bp · +
psaJ · PQ059357.1 · 67,085–67,219 bp · +
rpl33 · PQ059357.1 · 67,693–67,893 bp · +
rps18 · PQ059357.1 · 68,068–68,373 bp · +
rps12 · PQ059357.1 · 137,887–138,677 bp · +
psbB · PQ059357.1 · 72,452–73,978 bp · +
psbT · PQ059357.1 · 74,170–74,271 bp · +
psbH · PQ059357.1 · 74,580–74,801 bp · +
petB · PQ059357.1 · 74,926–76,293 bp · +
petD · PQ059357.1 · 76,482–77,683 bp · +
ycf2 · PQ059357.1 · 86,085–92,894 bp · +
ycf15 · PQ059357.1 · 92,985–93,233 bp · +
trnV-GAC · PQ059357.1 · 99,487–99,558 bp · +
rrn16 · PQ059357.1 · 99,786–101,276 bp · +
trnI-GAU · PQ059357.1 · 101,575–102,595 bp · +
trnA-UGC · PQ059357.1 · 102,660–103,542 bp · +
rrn23 · PQ059357.1 · 103,712–106,524 bp · +
rrn4.5 · PQ059357.1 · 106,623–106,725 bp · +
rrn5 · PQ059357.1 · 106,973–107,093 bp · +
trnR-ACG · PQ059357.1 · 107,328–107,401 bp · +
rpl32 · PQ059357.1 · 111,857–112,033 bp · +
trnL-UAG · PQ059357.1 · 112,478–112,557 bp · +
ccsA · PQ059357.1 · 112,654–113,628 bp · +
trnN-GUU · PQ059357.1 · 127,777–127,848 bp · +
rps7 · PQ059357.1 · 138,731–139,198 bp · +
ndhB · PQ059357.1 · 139,527–141,684 bp · +
trnL-CAA · PQ059357.1 · 142,227–142,307 bp · +
trnI-CAU · PQ059357.1 · 149,800–149,873 bp · +
rpl23 · PQ059357.1 · 150,033–150,314 bp · +
rpl2 · PQ059357.1 · 150,333–151,815 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria yunnanensis var. salicifolia
ANNOTATED PLASTOME
PQ059357.1
151,910 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37978 75955 113932 151910 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 217 1275 1059 Locate
trnK-UUU gene − 1517 4105 2589 Locate
matK gene − 1812 3347 1536 Locate
rps16 gene − 4987 6159 1173 Locate
trnQ-UUG gene − 7164 7235 72 Locate
psbK gene + 7560 7745 186 Locate
psbI gene + 8137 8247 111 Locate
trnS-GCU gene − 8367 8454 88 Locate
trnG-UCC gene + 9135 9886 752 Locate
trnR-UCU gene + 10057 10128 72 Locate
atpA gene − 10225 11748 1524 Locate
atpF gene − 11831 13058 1228 Locate
atpH gene − 13414 13659 246 Locate
atpI gene − 14655 15398 744 Locate
rps2 gene − 15747 16457 711 Locate
rpoC2 gene − 16674 20879 4206 Locate
rpoC1 gene − 21034 23863 2830 Locate
rpoB gene − 23890 27102 3213 Locate
trnC-GCA gene + 28271 28341 71 Locate
petN gene + 29053 29142 90 Locate
psbM gene − 30140 30244 105 Locate
trnD-GUC gene − 30764 30837 74 Locate
trnY-GUA gene − 30952 31035 84 Locate
trnE-UUC gene − 31095 31167 73 Locate
trnT-GGU gene + 31743 31814 72 Locate
psbD gene + 33121 34182 1062 Locate
psbC gene + 34130 35551 1422 Locate
trnS-UGA gene − 35786 35877 92 Locate
psbZ gene + 36197 36385 189 Locate
trnG-GCC gene + 36657 36727 71 Locate
trnfM-CAU gene − 36881 36954 74 Locate
rps14 gene − 37104 37406 303 Locate
psaB gene − 37534 39738 2205 Locate
psaA gene − 39764 42016 2253 Locate
ycf3 gene − 42686 44609 1924 Locate
trnS-GGA gene + 45494 45580 87 Locate
rps4 gene − 45866 46471 606 Locate
trnT-UGU gene − 46825 46897 73 Locate
trnL-UAA gene + 47583 48143 561 Locate
trnF-GAA gene + 48450 48522 73 Locate
ndhJ gene − 49164 49640 477 Locate
ndhK gene − 49748 50425 678 Locate
ndhC gene − 50478 50840 363 Locate
trnV-UAC gene − 51696 52348 653 Locate
trnM-CAU gene + 52529 52601 73 Locate
atpE gene − 52817 53218 402 Locate
atpB gene − 53215 54702 1488 Locate
rbcL gene + 55452 56915 1464 Locate
accD gene + 57641 59107 1467 Locate
psaI gene + 59665 59775 111 Locate
ycf4 gene + 60209 60763 555 Locate
cemA gene + 61501 62100 600 Locate
petA gene + 62307 63269 963 Locate
psbJ gene − 64303 64425 123 Locate
psbL gene − 64559 64675 117 Locate
psbF gene − 64699 64818 120 Locate
psbE gene − 64833 65084 252 Locate
petL gene + 65993 66088 96 Locate
petG gene + 66264 66377 114 Locate
trnW-CCA gene − 66496 66569 74 Locate
trnP-UGG gene − 66739 66812 74 Locate
psaJ gene + 67085 67219 135 Locate
rpl33 gene + 67693 67893 201 Locate
rps18 gene + 68068 68373 306 Locate
rpl20 gene − 68610 68996 387 Locate
rps12 gene − 69797 69910 114 Locate
clpP gene − 70053 71985 1933 Locate
psbB gene + 72452 73978 1527 Locate
psbT gene + 74170 74271 102 Locate
psbN gene − 74345 74476 132 Locate
psbH gene + 74580 74801 222 Locate
petB gene + 74926 76293 1368 Locate
petD gene + 76482 77683 1202 Locate
rpoA gene − 78058 78858 801 Locate
rps11 gene − 78930 79346 417 Locate
rpl36 gene − 79448 79561 114 Locate
infA gene − 79657 79890 234 Locate
rps8 gene − 80006 80416 411 Locate
rpl14 gene − 80586 80954 369 Locate
rpl16 gene − 81081 82314 1234 Locate
rps3 gene − 82469 83131 663 Locate
rpl22 gene − 83133 83588 456 Locate
rps19 gene − 83648 83926 279 Locate
rpl2 gene − 83981 85463 1483 Locate
rpl23 gene − 85482 85763 282 Locate
trnI-CAU gene − 85923 85996 74 Locate
ycf2 gene + 86085 92894 6810 Locate
ycf15 gene + 92985 93233 249 Locate
trnL-CAA gene − 93489 93569 81 Locate
ndhB gene − 94112 96269 2158 Locate
rps7 gene − 96598 97065 468 Locate
rps12 gene − 97119 97909 791 Locate
trnV-GAC gene + 99487 99558 72 Locate
rrn16 gene + 99786 101276 1491 Locate
trnI-GAU gene + 101575 102595 1021 Locate
trnA-UGC gene + 102660 103542 883 Locate
rrn23 gene + 103712 106524 2813 Locate
rrn4.5 gene + 106623 106725 103 Locate
rrn5 gene + 106973 107093 121 Locate
trnR-ACG gene + 107328 107401 74 Locate
trnN-GUU gene − 107948 108019 72 Locate
ndhF gene − 109096 111336 2241 Locate
rpl32 gene + 111857 112033 177 Locate
trnL-UAG gene + 112478 112557 80 Locate
ccsA gene + 112654 113628 975 Locate
ndhD gene − 113861 115384 1524 Locate
psaC gene − 115490 115735 246 Locate
ndhE gene − 115992 116297 306 Locate
ndhG gene − 116528 117058 531 Locate
ndhI gene − 117423 117923 501 Locate
ndhA gene − 118004 120088 2085 Locate
ndhH gene − 120090 121301 1212 Locate
rps15 gene − 121374 121706 333 Locate
ycf1 gene − 121913 127558 5646 Locate
trnN-GUU gene + 127777 127848 72 Locate
trnR-ACG gene − 128395 128468 74 Locate
rrn5 gene − 128703 128823 121 Locate
rrn4.5 gene − 129071 129173 103 Locate
rrn23 gene − 129272 132084 2813 Locate
trnA-UGC gene − 132254 133136 883 Locate
trnI-GAU gene − 133201 134221 1021 Locate
ycf68 gene − 133827 134066 240 Locate
rrn16 gene − 134520 136010 1491 Locate
trnV-GAC gene − 136238 136309 72 Locate
rps12 gene + 137887 138677 791 Locate
rps7 gene + 138731 139198 468 Locate
ndhB gene + 139527 141684 2158 Locate
trnL-CAA gene + 142227 142307 81 Locate
ycf15 gene − 142563 142811 249 Locate
ycf2 gene − 142902 149711 6810 Locate
trnI-CAU gene + 149800 149873 74 Locate
rpl23 gene + 150033 150314 282 Locate
rpl2 gene + 150333 151815 1483 Locate
Status Available
Accession PQ059357.1
Length 151,910 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources